Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq964 125 6e-24 seq24793 118 8e-22 seq7912 118 8e-22 seq1703 111 1e-19 seq7348 105 5e-18 seq4396 104 2e-17 seq3667 104 2e-17 seq1045 104 2e-17 seq37186 102 6e-17 seq12662 100 2e-16 seq20570 93.3 3e-14 seq11485 89.7 4e-13 seq23940 87.8 1e-12 seq6096 87.8 1e-12 seq1346 82.4 6e-11 >seq964 Length=27231 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| ||||| ||||||||| || |||||||| || |||| | || || Sbjct 10613 ACCAAGTGAAGCGTCGACTCCTTCTGGATATTGTAGTCAGCAAGCGTGCGACCATCCTCA 10554 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | | ||||||||| ||||| | || ||||||||| | Sbjct 10553 AGCTGCTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCCTGA 10494 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | |||| | ||| || |||| |||||| |||||| Sbjct 10493 ATTTTAGCCTTCACATTGTCGATTGTGTCTGAGCTCTCAACTTCCAAGGTAATAGTCTTG 10434 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||||||||||||||||||||| Sbjct 10433 CCTGTCAGAGTCTTCACAAAGATTTGCAT 10405 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||| | || | || | |||||||| ||| ||||||||||||||||| Sbjct 10176 GCCACCTCTGAGTCGAAGCACAAGATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCAGC 10117 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| || || ||||| || || | || ||| ||||| || || Sbjct 10116 TAGCGTGCGTCCATCCTCCAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCCGGTGG 10057 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||| || ||| || || ||| || | | | |||| | ||| || Sbjct 10056 GATACCCTCTTTATCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCAAC 9997 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || || || || || || || ||||| |||||||||||||| Sbjct 9996 CTCCAAAGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCAT 9949 >seq24793 Length=2311 Score = 118 bits (130), Expect = 8e-22 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 ||||| || ||||||||| ||||||||||| || | | |||| || || || Sbjct 1411 TGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAATGTTCTGCCGTCTTCAAGCTGC 1470 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| ||||||| ||| ||||| ||||| | |||||||||||| | | || Sbjct 1471 TTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCTTGGA-TCTT 1529 Query 45254 TGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||||| || | | | | |||| | ||||||||| | |||||||||||| ||||| Sbjct 1530 TGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCCACCTCTAGGGTAATCGTCTTTCCCGT 1589 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || ||||| ||||| Sbjct 1590 CAAGGTCTTAACGAAGATCTGCAT 1613 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||| || || | |||| || || || ||||||||||| Sbjct 1650 CTCCTTCTGGATGTTGTAATCAGCGAGAGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 1709 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | || ||| || || || || | |||||||||||| || | || |||| | || Sbjct 1710 GATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGAA-TCTTGGCTTTAACGT 1768 Query 45265 CG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | | | |||| | |||||||| | ||| || ||||| ||||| |||||||| | Sbjct 1769 TGTCGATGGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTCTTAA 1828 Query 45324 CAAAGATTTGCAT 45336 |||| || ||||| Sbjct 1829 CAAAAATCTGCAT 1841 >seq7912 Length=9007 Score = 118 bits (130), Expect = 8e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTC 45183 || |||||||| || ||| |||||| || ||||||||||| | | || | |||| | || Sbjct 6351 AACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGCTAAGGT-GCGACCATC 6409 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || || ||||| || ||||| || | || ||| ||||| ||||| | |||||||||||| Sbjct 6410 CTCAAGCTGTTTCCCAGCGAAGATGAGCCTCTGCTGGTCCGGAGGGATACCCTCCTTGTC 6469 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 || || ||| || | | | |||| | ||| ||||||| ||||| || Sbjct 6470 TTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAAAGTAATGGT 6529 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| || |||| |||||| |||||||| |||||| Sbjct 6530 CTTTCCAGTCAAAGTCTTGACAAAGATCTGCATG 6563 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGT-TCAGTTGGCGATCGTC 45183 || |||||||| || ||| |||||| || || ||||||||| | || || ||| | || Sbjct 6123 AACACCAAGTGAAGTGTGGACTCCTTTTGGATATTGTAGTCGGCTAAGGTG-CGACCATC 6181 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || || || || || ||||| || | ||||| ||||| ||||| | ||| ||||| || Sbjct 6182 CTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTATC 6241 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 | || || ||| || | | | |||| | ||||||||||| || || || Sbjct 6242 CTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCCACCTCCAACGTGATGGT 6301 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||||| || || ||||| |||||||| |||||| Sbjct 6302 CTTGCCGGTAAGTGTCTTGACAAAGATCTGCATG 6335 >seq1703 Length=21771 Score = 111 bits (122), Expect = 1e-19 Identities = 155/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 45124 TAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTC 45183 ||| |||||||| || || ||| |||||||||||||| || || |||| | || Sbjct 18154 TAACACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAATCAGCCAAGGTGCGACCATC 18213 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || || || || || |||||||||| || ||| ||||| ||||| | |||||| ||||| Sbjct 18214 CTCGAGCTGCTTCCCAGCGAATATCAGCCTCTGCTGGTCCGGAGGGATACCCTCTTTGTC 18273 Query 45244 CGCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCG 45302 | |||| |||| || | | | | |||| || ||||||||| | || |||| Sbjct 18274 TTGGA-TTTTCGCTTTCACGTTGTCAATGGTGTCGGAACTCTCCACCTCTAAAGTGATCG 18332 Query 45303 TCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| || |||| ||||| || ||||| |||||| Sbjct 18333 TCTTTCCTGTCAACGTCTTAACGAAGATCTGCATG 18367 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| ||||| ||||||||| || ||||| ||| || |||| | || Sbjct 18839 AAGACCAAGTGAAGCGTAGACTCCTTCTGGATATTGTAATCGGCCAAGGTGCGACCATCC 18898 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || ||||||||||| || | ||||| || || ||||| | || ||||||||| Sbjct 18899 TCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGGATCCCTTCCTTGTCC 18958 Query 45245 GCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 | | || |||| || | | | | |||| | |||||||| | ||| || || Sbjct 18959 TGGA-TCTTGGCTTTCACGTTGTCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGATTGT 19017 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||| || || ||||| ||||| ||||||||||| || Sbjct 19018 CTTCCCGGTGAGAGTTTTCACGAAGATTTGCATCTT 19053 >seq7348 Length=9517 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| |||||||||||| || |||| | || || Sbjct 205 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGACCATCCTCG 146 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| || | ||||| ||||| ||||| | ||| ||||||||| Sbjct 145 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGG 86 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| || |||| || || |||||| Sbjct 85 ATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCAACTTCCAATGTGATGGTCTTG 26 Query 45308 CCCGTCAGAGTCTTCACAAAGAT 45330 || || ||||||||||| ||||| Sbjct 25 CCGGTAAGAGTCTTCACGAAGAT 3 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 45129 CCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGTCC 45187 ||||||| || || ||||||||| ||||||||||| | | || | |||| | || || Sbjct 432 CCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCTGCTAAGGT-GCGACCATCCTCA 374 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| || | ||||| || || ||||| | || ||||||||| Sbjct 373 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGG 314 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||| | || || ||||| Sbjct 313 ATCTTGGCCTTTACGTTGTCAATGGTGTCAGAGCTCTCCACCTCAAGTGTGATGGTCTTA 254 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||||| || || ||||| Sbjct 253 CCAGTCAAGGTCTTCACGAATATCTGCAT 225 >seq4396 Length=13502 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | || | ||| |||||||| || || ||| |||||||||||||| || | Sbjct 12717 CCACCACGCAGACGTAACACCAAGTGAAGGGTTGACTCTTTCTGAATGTTGTAATCAGCC 12658 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | |||| | || || || || || || ||||| || | ||||| ||||| || || Sbjct 12657 AAGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 12598 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| ||| || ||| || | | | |||| | ||||||| Sbjct 12597 ATCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCCACC 12538 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || ||||| || ||||| ||||| ||||| || ||||| Sbjct 12537 TCCAAAGTGATAGTCTTCCCGGTCAGTGTCTTAACAAAAATCTGCAT 12491 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||| ||||| ||||| || |||| | || Sbjct 313 AACACCAAGTGAAGTGTAGACTCCTTCTGGATGTTATAGTCAGCCAAGGTGCGACCATCC 254 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || || ||||| || | ||||| ||||| || || | |||||||||||| Sbjct 253 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCC 194 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| || ||| || | | | |||| | ||| || || | ||| || ||| Sbjct 193 TGAATCTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAACTTCGAGGGTGATTGTC 134 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||| |||||||| ||||| Sbjct 133 TTTCCGGTTAGTGTCTTGACAAAGATCTGCAT 102 >seq3667 Length=14967 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| || ||| |||| || || ||||| |||||||| Sbjct 5530 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTGTTTCCCGGCGAA 5589 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| |||||| ||||| ||||| | || ||||||||| || || || || Sbjct 5590 GATCAGCCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATT 5649 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | || ||||| | ||| |||||||| ||||| || || ||||| Sbjct 5650 GTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCAC 5709 Query 45325 AAAGATTTGCATGTT 45339 ||||| ||||| || Sbjct 5710 GAAGATCTGCATCTT 5724 >seq1045 Length=26565 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| || ||| |||| || || ||||| |||||||| Sbjct 2827 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTGTTTCCCGGCGAA 2886 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| |||||| ||||| ||||| | || ||||||||| || || ||| || Sbjct 2887 GATCAGCCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 2946 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| ||| ||||| | ||| || ||||| ||||| || || ||||| Sbjct 2947 GTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCAC 3006 Query 45325 AAAGATTTGCATGTT 45339 ||||| ||||| || Sbjct 3007 GAAGATCTGCATCTT 3021 >seq37186 Length=985 Score = 102 bits (112), Expect = 6e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||| || || ||||||||||| || | | |||| |||| ||||| |||||||| Sbjct 475 CTCTTTTTGGATGTTGTAGTCAGCCAATGTTCTGCCGTCCTCCAACTGTTTCCCGGCGAA 534 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | || ||| || |||||||| | |||||| |||||| || | || |||| | || Sbjct 535 GATAAGCCTCTGCTGATCGGGAGGGATACCCTCTTTGTCCTGAA-TCTTGGCTTTAACGT 593 Query 45265 CG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | | | |||| | |||||||| | ||| |||||||| || || |||||||| | Sbjct 594 TGTCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGATCGTCTTCCCAGTGAGAGTCTTAA 653 Query 45324 CAAAGATTTGCAT 45336 | ||||||||||| Sbjct 654 CGAAGATTTGCAT 666 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 ||||| || ||||||||| ||||||||||| || | | |||| || || || Sbjct 7 TGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAATGTTCTGCCGTCTTCAAGCTGC 66 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| ||||||| ||| ||||| ||||| | |||||||||||| || || Sbjct 67 TTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCTTGGATCTTA 126 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 || || | | | |||| | ||||||||||| ||||| |||||||| ||| Sbjct 127 GCTTTGACATTGTCAATGGTGTCGGAGCTCTCCACCTCCAAAGTAATGGTCTTGCCGGTC 186 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 | ||||| || || || ||||| Sbjct 187 AATGTCTTAACGAAAATCTGCAT 209 >seq12662 Length=5898 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 ||||| || ||||||||| ||||||||||| || | |||| || || || Sbjct 3691 TGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCGAGAGTTCTGCCGTCTTCAAGCTGC 3632 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || ||||| ||||||| ||| ||||| || || | ||||||||||| || ||| Sbjct 3631 TTGCCTGCGAAGATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCTTGGATCTTT 3572 Query 45254 TGCTTAACCGCCGCC-ACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 |||| || | | | | |||| | ||||||||| | |||||||||||| ||||| Sbjct 3571 -GCTTTGACGTTGTCGATGGTGTCGGAGCTCTCCACCTCTAGGGTAATCGTCTTTCCCGT 3513 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || ||||| ||||| Sbjct 3512 CAAGGTCTTAACGAAGATCTGCAT 3489 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||| || || | |||| || || || ||||||||||| Sbjct 3452 CTCCTTCTGGATGTTGTAATCAGCGAGAGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 3393 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | || ||| || || || || | |||||||||||| || | || |||| | || Sbjct 3392 GATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGAA-TCTTGGCTTTAACGT 3334 Query 45265 CG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | | | |||| | |||||||| | ||| || ||||| ||||| |||||||| | Sbjct 3333 TGTCGATGGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTCTTAA 3274 Query 45324 CAAAGATTTGCAT 45336 |||| || ||||| Sbjct 3273 CAAAAATCTGCAT 3261 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| | || ||||||||| |||||||||||| || |||| | || Sbjct 3928 AACACCAAGTGAATGGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCATCC 3869 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || ||||| ||||| || | ||||| ||||| ||||| | || ||||| || Sbjct 3868 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCT 3809 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 | | || |||| || || | ||||| | ||| || || | ||| || || Sbjct 3808 TGGA-TCTTGGCTTTCACGTTATCAATCGTGTCCGAGCTCTCAACTTCGAGGGTGATGGT 3750 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| || |||| |||||||| ||||| ||||| Sbjct 3749 CTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 3717 >seq20570 Length=3172 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGT 45182 || |||||||| || || ||||||||| ||||||||||| || ||| | ||| Sbjct 307 AACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTT--CTCCCGT 364 Query 45183 CGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGT 45242 | |||| || ||||| ||||| || | || ||| || || ||||| | || ||||||| Sbjct 365 CCTCCAACTGCTTTCCTGCGAAGATAAGCCTCTGCTGATCCGGAGGAATCCCTTCCTTGT 424 Query 45243 CCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCG 45302 || || || |||||| | | | |||| | |||||||| | ||| || | Sbjct 425 CCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATTG 484 Query 45303 TCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || ||||| ||||| ||||| ||||| Sbjct 485 TCTTTCCTGTGAGAGTTTTCACGAAGATCTGCAT 518 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || | | || || ||||| || ||||| || Sbjct 99 CTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCGAGTTGCTTGCCGGCAAA 158 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| ||| ||||| || || | |||||||| ||| || || |||||| Sbjct 159 GATCAACCTCTGCTGGTCAGGTGGGATCCCCTCCTTATCCTGGATCTTAGCCTTAACGTT 218 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | |||| | ||||||||||| || || ||||| || |||| ||||| || Sbjct 219 GTCAATAGTGTCGGAGCTCTCCACCTCCAAAGTGATTGTCTTTCCGGTCAATGTCTTGAC 278 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 279 AAAGATCTGCAT 290 >seq11485 Length=6519 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||| ||| ||| ||| |||| || || || || || ||||| Sbjct 4669 CTCCTTCTGGATGTTGTAATCGGCCAGGGTGCGTCCGTCTTCTAGCTGCTTCCCAGCGAA 4610 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | || ||| ||||||||||| | || ||||||||| || ||| ||| || Sbjct 4609 GATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATT 4550 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | |||| | ||| ||||| | || || |||||||| || || || ||||| Sbjct 4549 GTCTATAGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGTGTTTTCAC 4490 Query 45325 AAAGATTTGCAT 45336 || |||||||| Sbjct 4489 GAAAATTTGCAT 4478 >seq23940 Length=2465 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 45104 TCTTCGC--CACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGT 45161 ||||||| | ||||||| | | |||| ||| ||||| ||||||||| ||||||| Sbjct 2293 TCTTCGCTCCTCCTCTCAGACGGAGAACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGT 2352 Query 45162 AGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGT 45221 ||||| || ||| |||| || || || ||||||||||| || | ||||| |||| Sbjct 2353 AGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGT 2412 Query 45222 CGGGAGGCACACCCTCCTTGTC 45243 | ||||| | || |||||||| Sbjct 2413 CCGGAGGGATGCCTTCCTTGTC 2434 >seq6096 Length=10951 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 45104 TCTTCGC--CACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGT 45161 ||||||| | ||||||| | | |||| ||| ||||| ||||||||| ||||||| Sbjct 10767 TCTTCGCTCCTCCTCTCAGACGGAGAACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGT 10826 Query 45162 AGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGT 45221 ||||| || ||| |||| || || || ||||||||||| || | ||||| |||| Sbjct 10827 AGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGT 10886 Query 45222 CGGGAGGCACACCCTCCTTGTC 45243 | ||||| | || |||||||| Sbjct 10887 CCGGAGGGATGCCTTCCTTGTC 10908 >seq1346 Length=23970 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| || | || || |||||||| || || ||| ||||| ||||||||||| Sbjct 5917 CCACCCCTAAGCCTCAAGACCAAGTGAAGAGTTGACTCTTTCTGGATGTTGTAGTCCGCA 5858 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | | || || |||||||| || |||||||||| || |||||| || || || Sbjct 5857 AGGGTTCTACCATCTTCAAGTTGTTTGCCAGCGAATATCAGCCTCTGTTGATCCGGTGGT 5798 Query 45230 ACACCCTCCTTGTCC 45244 | |||||||||||| Sbjct 5797 ATTCCCTCCTTGTCC 5783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394763516779372