Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1346 84.2 2e-11 seq4867 82.4 6e-11 >seq1346 Length=23970 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || || | |||| |||||| ||||| ||||| || ||||||||||| || Sbjct 5917 CCACCCCTAAGCCTCAAGACCAAGTGAAGAGTTGACTCTTTCTGGATGTTGTAGTCCGCA 5858 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCC 18212 | ||| ||| |||||| | ||||||||| || | || || || ||||||||| Sbjct 5857 AGGGTTCTACCATCTTCAAGTTGTTTGCCAGCGAATATCAGCCTCTGTTGATCC 5804 >seq4867 Length=12713 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || || || |||| |||||| || || ||||| |||||||||||||| | Sbjct 7580 CCACCCCTAAGCCTCAGAACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGAA 7639 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 | ||| || ||| || | |||||| || ||| |||| ||||| |||||||| Sbjct 7640 AGCGTTCGACCATCCTCTAGTTGTTTCCCAGCAAAGATGAGTCTCTGTTGATC 7692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379044727457340