Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2790 118 2e-21 seq2241 118 2e-21 >seq2790 Length=17423 Score = 118 bits (130), Expect = 2e-21 Identities = 147/198 (74%), Gaps = 5/198 (3%) Strand=Plus/Minus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| || || || ||| | |||| || ||| |||| ||||||||| || ||| | | Sbjct 3827 AGAACAACCCTGACGATCGGCGGATTATAATGTCGGCTTGGAATCCTTCTGACCTTAAGC 3768 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| |||||||||||||||||| |||||| || || || || |||||||| | | Sbjct 3767 TGATGGCGCTTCCTCCATGCCACATGTTTGCTCAGTTCTACGTTGCAAATGGAGAGCTCT 3708 Query 35637 CGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 |||| || |||||||||| ||| || ||| || | || || || || || ||||| Sbjct 3707 CGTGTCAAATGTATCAGCGCTCAGCTGATATG--GGTCTTGGTGTACCTTTTAACATTGC 3650 Query 35695 ATCATACTCTCTTCTGAC 35712 || ||||| ||||| || Sbjct 3649 TTCTTACTCCCTTCTTAC 3632 >seq2241 Length=19256 Score = 118 bits (130), Expect = 2e-21 Identities = 180/252 (71%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 35465 GATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAA-AA 35523 ||||||||||| | || ||||||| | || || || | | | | | |||| || Sbjct 2090 GATTATACTGGCCAAGGATTTGATCAGCTCGCAGATGTAATCGACAAGATCA-AGAACAA 2032 Query 35524 TCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGC 35583 ||| |||||| | | || || | |||| ||||| ||| ||||| | || ||||| Sbjct 2031 TCCTGATGATCGGCGTATCATATTATCGGCTTGGAACCCTTCTGATCTCAAGCTGATGGC 1972 Query 35584 TCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCA 35643 |||||||| ||||||||| ||| || || || ||||| | || || | ||||| || Sbjct 1971 GCTTCCTCCGTGCCACATGTTTGCACAGTTCTACGTGGCGGAAGGGGAGCTCTCGTGTCA 1912 Query 35644 GTTGTATCAGCGA--AGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATAC 35701 | |||||||||| |||||| ||| || | || ||||| || || ||||| || ||| Sbjct 1911 GATGTATCAGCGTTCAGCGGATATG--GGCCTTGGTGTGCCGTTTAACATTGCTTCCTAC 1854 Query 35702 TCTCTTCTGACT 35713 |||||||||||| Sbjct 1853 TCTCTTCTGACT 1842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988763260059060