Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq2790 118 2e-21
seq2241 118 2e-21
>seq2790
Length=17423
Score = 118 bits (130), Expect = 2e-21
Identities = 147/198 (74%), Gaps = 5/198 (3%)
Strand=Plus/Minus
Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576
|||| || || || ||| | |||| || ||| |||| ||||||||| || ||| | |
Sbjct 3827 AGAACAACCCTGACGATCGGCGGATTATAATGTCGGCTTGGAATCCTTCTGACCTTAAGC 3768
Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636
| ||||| |||||||||||||||||| |||||| || || || || |||||||| | |
Sbjct 3767 TGATGGCGCTTCCTCCATGCCACATGTTTGCTCAGTTCTACGTTGCAAATGGAGAGCTCT 3708
Query 35637 CGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694
|||| || |||||||||| ||| || ||| || | || || || || || |||||
Sbjct 3707 CGTGTCAAATGTATCAGCGCTCAGCTGATATG--GGTCTTGGTGTACCTTTTAACATTGC 3650
Query 35695 ATCATACTCTCTTCTGAC 35712
|| ||||| ||||| ||
Sbjct 3649 TTCTTACTCCCTTCTTAC 3632
>seq2241
Length=19256
Score = 118 bits (130), Expect = 2e-21
Identities = 180/252 (71%), Gaps = 6/252 (2%)
Strand=Plus/Minus
Query 35465 GATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAA-AA 35523
||||||||||| | || ||||||| | || || || | | | | | |||| ||
Sbjct 2090 GATTATACTGGCCAAGGATTTGATCAGCTCGCAGATGTAATCGACAAGATCA-AGAACAA 2032
Query 35524 TCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGC 35583
||| |||||| | | || || | |||| ||||| ||| ||||| | || |||||
Sbjct 2031 TCCTGATGATCGGCGTATCATATTATCGGCTTGGAACCCTTCTGATCTCAAGCTGATGGC 1972
Query 35584 TCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCA 35643
|||||||| ||||||||| ||| || || || ||||| | || || | ||||| ||
Sbjct 1971 GCTTCCTCCGTGCCACATGTTTGCACAGTTCTACGTGGCGGAAGGGGAGCTCTCGTGTCA 1912
Query 35644 GTTGTATCAGCGA--AGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATAC 35701
| |||||||||| |||||| ||| || | || ||||| || || ||||| || |||
Sbjct 1911 GATGTATCAGCGTTCAGCGGATATG--GGCCTTGGTGTGCCGTTTAACATTGCTTCCTAC 1854
Query 35702 TCTCTTCTGACT 35713
||||||||||||
Sbjct 1853 TCTCTTCTGACT 1842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 988763260059060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |