Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq12321 158 2e-33
seq27908 100 4e-16
seq20848 95.1 2e-14
seq20246 95.1 2e-14
>seq12321
Length=6064
Score = 158 bits (174), Expect = 2e-33
Identities = 405/606 (67%), Gaps = 8/606 (1%)
Strand=Plus/Minus
Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635
|||| || |||||||||||||| || ||||||||||| || | ||||| || ||
Sbjct 1393 ATCAGGCAGGCGAAATCGCAGTGAAGCCCCTCGTCTCTCGAGATGAGCTCGTTGGAGAAG 1334
Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695
|| || || ||||| || |||||||| || ||||| || || || ||| ||||||
Sbjct 1333 GTCAGACCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAG 1274
Query 33696 AAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCT-CTCCATAACCGGCGCTGT 33753
|||||||| ||||| || ||| || ||||| | | |||| | | | | | | | |
Sbjct 1273 AAGAAGATCCCTTCGAC-GCAGGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGAT-C 1216
Query 33754 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813
| | |||||||| ||||| | ||||||||| || || || || || || ||||
Sbjct 1215 CGTCGATCCACTTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGG 1156
Query 33814 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33873
| ||||| | || | || || | ||||| | || || |||| || |||||||
Sbjct 1155 CCCGGAAGAGGTGGTCCCTCTCCTTGTTGTCTTTGATGTAGGTGTCGAGCAGGAGACTAT 1096
Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933
|||| || || || ||||| ||||| || ||||| || |||||||| | |||||||
Sbjct 1095 ACATCTCTGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGG 1036
Query 33934 TAATCTGCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTG 33992
| ||| || || | ||| || || || | ||| || || || || || |
Sbjct 1035 AGACCTGGACGTC-GGACATGAACCGGGAGGCGAGATTCTCGAGGACGATCCCGTCGGAG 977
Query 33993 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATT 34051
|| || || || |||| || ||||| || || | ||| | | || | || || |
Sbjct 976 GCGGCGAAGAAGGCCAGGACGTGTTTGATGAAGTGGCGCTCGCCGTCGT-TGAGATTCTC 918
Query 34052 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 34111
||| || | || || | || ||||| || | ||||| || || || || ||
Sbjct 917 CCAGTCGCGTGTGTCGCCGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGC 858
Query 34112 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGG 34171
||| || ||||| | |||||| | | |||||||||||||| || ||||| | |||
Sbjct 857 CTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATGCAGAATCTGTCTGG 798
Query 34172 ATTTGG 34177
||||
Sbjct 797 GGTTGG 792
>seq27908
Length=1802
Score = 100 bits (110), Expect = 4e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721
|||||| | ||||| | || |||||||| || ||||||||| | ||| | || ||
Sbjct 1026 AGTTCCTGAGTTAAAGAGAGTGGGAGAAGCATGAGTAAACCATCGCTGAGACATTAAATG 1085
Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781
||| || | || || || || || || || ||||| || || | ||| | ||| |
Sbjct 1086 GTAAGTTTGGATTGCAGATTCAATGTCTTCTTTGTGAATCCCAACAGAGACCCTCATGAG 1145
Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841
|||||||||||| |||||||| | |||| | | |||||| | ||| || | || |
Sbjct 1146 CATGTGCTGAGGCCTTTCAACGACTTTGCCATGGACTTTCAAGAGGTATGACCTCTCAAG 1205
Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889
|||||| || ||||| |||| ||| ||| || || || || || ||
Sbjct 1206 AGTTTTGAATCCAAAGTAGTCATATTCAAAATCACGATCATAGATGAT 1253
Score = 95.1 bits (104), Expect = 2e-14
Identities = 154/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481
|||||| || || | || | ||| || | ||| |||| | || |||||||| ||||||
Sbjct 708 TCCTCCTTGGTCGACATAACGAGCAGTATCATTGAAAACCCGCAGCATTGGAACAATACC 767
Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541
|||||| ||||| || || ||| || | |||| ||||| || || || ||
Sbjct 768 ATTTGATTCTCCATTAGTGCCACGGATGTAACTTCCAGAAGCACGGATGTTGTGAACCGA 827
Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601
| |||||| ||||| || |||| || | ||| || ||| || || ||||| ||
Sbjct 828 AACACCTATACCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTATCATATAT 887
Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643
||||| ||||||||||| ||||| | ||||| |||||
Sbjct 888 TCCTTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 929
>seq20848
Length=3109
Score = 95.1 bits (104), Expect = 2e-14
Identities = 144/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481
|||||| || || | ||| | ||| |||| ||| | || | || |||||||| ||||||
Sbjct 2273 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 2332
Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541
|| ||| | ||||| || || || |||| ||| | ||||| || || || ||
Sbjct 2333 ATTCGATGTTCCATTTGTGCCACGAATGTAGCTTCCTGTTGCACGGATGTTGTGAACAGA 2392
Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601
| |||||||||||| || |||| || | ||| || ||| || || ||||| ||
Sbjct 2393 AACACCTATTCCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTTTCATATAT 2452
Query 63602 GCCTTCTATGCTATCATCGATCATG 63626
|| || ||||||||||| |||||
Sbjct 2453 TCCCTCAATGCTATCATCCTTCATG 2477
Score = 82.4 bits (90), Expect = 1e-10
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721
|||||| | ||| || | || ||||| || || |||||||| | ||| | | ||
Sbjct 2603 AGTTCCTGAATTGAAGAGAGTCGGAGACGCATGAGTAAACCACCGCTGAGACATCAAATG 2662
Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781
||| || | || || || || | ||| || ||||| || || | || | ||| |
Sbjct 2663 GTAAGTTTTGATTGCGGAATCAACATCTTCTTTGTGAATGCCGACAGAAACCCTCATGAG 2722
Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841
|||||||||||| |||||||| | ||| | | ||| || | ||| ||| | || |
Sbjct 2723 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTTAAGAGGTACGATCTCTCGAG 2782
Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889
|||||| |||||||| |||| || ||| ||||| || || || ||
Sbjct 2783 AGTTTTGAAACCAAAGTAGTCATACTCAAAATCTCGATCATAGATGAT 2830
>seq20246
Length=3254
Score = 95.1 bits (104), Expect = 2e-14
Identities = 144/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481
|||||| || || | ||| | ||| |||| ||| | || | || |||||||| ||||||
Sbjct 2443 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 2384
Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541
|| ||| | ||||| || || || |||| ||| | ||||| || || || ||
Sbjct 2383 ATTCGATGTTCCATTTGTGCCACGAATGTAGCTTCCTGTTGCACGGATGTTGTGAACAGA 2324
Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601
| |||||||||||| || |||| || | ||| || ||| || || ||||| ||
Sbjct 2323 AACACCTATTCCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTTTCATATAT 2264
Query 63602 GCCTTCTATGCTATCATCGATCATG 63626
|| || ||||||||||| |||||
Sbjct 2263 TCCCTCAATGCTATCATCCTTCATG 2239
Score = 82.4 bits (90), Expect = 1e-10
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721
|||||| | ||| || | || ||||| || || |||||||| | ||| | | ||
Sbjct 2113 AGTTCCTGAATTGAAGAGAGTCGGAGACGCATGAGTAAACCACCGCTGAGACATCAAATG 2054
Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781
||| || | || || || || | ||| || ||||| || || | || | ||| |
Sbjct 2053 GTAAGTTTTGATTGCGGAATCAACATCTTCTTTGTGAATGCCGACAGAAACCCTCATGAG 1994
Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841
|||||||||||| |||||||| | ||| | | ||| || | ||| ||| | || |
Sbjct 1993 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTTAAGAGGTACGATCTCTCGAG 1934
Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889
|||||| |||||||| |||| || ||| ||||| || || || ||
Sbjct 1933 AGTTTTGAAACCAAAGTAGTCATACTCAAAATCTCGATCATAGATGAT 1886
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629307983088960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |