Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq12321 127 3e-24 seq20848 118 1e-21 seq20246 118 1e-21 seq27908 100 4e-16 >seq12321 Length=6064 Score = 127 bits (140), Expect = 3e-24 Identities = 387/587 (66%), Gaps = 12/587 (2%) Strand=Plus/Minus Query 36152 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 36211 |||| || |||||||||||||| || ||||||||||| || | |||||||| || Sbjct 1393 ATCAGGCAGGCGAAATCGCAGTGAAGCCCCTCGTCTCTCGAGATGAGCTCGTTGGAGAAG 1334 Query 36212 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGA 36270 || || || ||||| || |||||||| || ||||| || || || ||| || ||| || Sbjct 1333 GTCAGACCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCGA-GCAGAAGCTTCCGGA 1275 Query 36271 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA--CCG-GCACT 36327 ||||| || ||||| || || ||||| | | ||||| | || | | | | Sbjct 1274 GAAGAAGATCCCTTCGACGCAGGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGATCC 1215 Query 36328 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 36387 ||| |||||||| ||||| | ||||||||| || || || || ||||| || Sbjct 1214 GTC---GATCCACTTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGAT 1158 Query 36388 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 36447 || ||||| | || | || || | ||||| | || || || | || ||||| Sbjct 1157 GGCCCGGAAGAGGTGGTCCCTCTCCTTGTTGTCTTTGATGTAGGTGTCGAGCAGGAGACT 1098 Query 36448 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 36507 |||||| || || || ||||| ||||| || || || || |||||||| | ||||| Sbjct 1097 ATACATCTCTGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTC 1038 Query 36508 GGTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 36566 || | ||| || || | ||| || || || | ||| || || || ||||| Sbjct 1037 GGAGACCTGGACGTC-GGACATGAACCGGGAGGCGAGATTCTCGAGGACGATCCCGTCGG 979 Query 36567 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG-TTTGGTGTTAGTTTA 36625 ||| || || || |||| || ||||| || || | ||| | || | || || Sbjct 978 AGGCGGCGAAGAAGGCCAGGACGTGTTTGATGAAGTGGCGCTCGCCGTCGT-TGAGATTC 920 Query 36626 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 36685 | ||| || | || || | || ||||| || | ||||| || || || || Sbjct 919 TCCCAGTCGCGTGTGTCGCCGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCG 860 Query 36686 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 ||||| || ||||| | |||||| | | ||||| ||||| || || Sbjct 859 GCCTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACAT 813 >seq20848 Length=3109 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| || || | ||| | ||| |||| ||| | || | || |||||||| |||||| Sbjct 2273 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 2332 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| ||||| ||||| || || || |||||||| ||||||| || || || || Sbjct 2333 ATTCGATGTTCCATTTGTGCCACGAATGTAGCTTCCTGTTGCACGGATGTTGTGAACAGA 2392 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | |||||||||||| || |||| || | ||| || ||| || || ||||| || Sbjct 2393 AACACCTATTCCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTTTCATATAT 2452 Query 66395 GCCCTCTATACTATCATCCATCATG 66419 ||||| || ||||||||| ||||| Sbjct 2453 TCCCTCAATGCTATCATCCTTCATG 2477 >seq20246 Length=3254 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| || || | ||| | ||| |||| ||| | || | || |||||||| |||||| Sbjct 2443 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 2384 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| ||||| ||||| || || || |||||||| ||||||| || || || || Sbjct 2383 ATTCGATGTTCCATTTGTGCCACGAATGTAGCTTCCTGTTGCACGGATGTTGTGAACAGA 2324 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | |||||||||||| || |||| || | ||| || ||| || || ||||| || Sbjct 2323 AACACCTATTCCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTTTCATATAT 2264 Query 66395 GCCCTCTATACTATCATCCATCATG 66419 ||||| || ||||||||| ||||| Sbjct 2263 TCCCTCAATGCTATCATCCTTCATG 2239 >seq27908 Length=1802 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||||| | ||||| | || |||||||| || ||||||||| | ||| | || || Sbjct 1026 AGTTCCTGAGTTAAAGAGAGTGGGAGAAGCATGAGTAAACCATCGCTGAGACATTAAATG 1085 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 ||| || | || || || || || || || ||||| || || | ||| | ||| | Sbjct 1086 GTAAGTTTGGATTGCAGATTCAATGTCTTCTTTGTGAATCCCAACAGAGACCCTCATGAG 1145 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 |||||||||||| |||||||||| ||| | | |||||| | ||| || | || | Sbjct 1146 CATGTGCTGAGGCCTTTCAACGACTTTGCCATGGACTTTCAAGAGGTATGACCTCTCAAG 1205 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAt 66682 |||||| || ||||| |||| ||| ||| || || || || || || Sbjct 1206 AGTTTTGAATCCAAAGTAGTCATATTCAAAATCACGATCATAGATGAT 1253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657640239478880