Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq2054 95.1 9e-15 seq964 93.3 3e-14 seq1703 87.8 1e-12 >seq2054 Length=20018 Score = 95.1 bits (104), Expect = 9e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990 ||||| || | ||| ||||| | || || | ||||| ||||| || ||||||| ||| Sbjct 3215 TTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTACCGGCGAAGATCAATCTCTGC 3274 Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCG 43050 ||||| | || | ||||||||| || |||| | ||||| || | | |||||| Sbjct 3275 TGATCTGGAGGGATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCG 3334 Query 43051 CCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 | |||||| || | || || || ||||||||||| |||||||| || || ||||| Sbjct 3335 GAGGACTCGACCTCGAGGGTGATGGTCTTTCCGGTTAGGGTTTTCACGAAGATCTGCATC 3394 Query 43111 TT 43112 || Sbjct 3395 TT 3396 >seq964 Length=27231 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 42906 ATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTG 42965 ||||| ||| |||||| || | ||||||||||| ||| |||||| | || || | || Sbjct 9696 ATGGAGAGTCGACTCCTTCTGGATATTGTAATCGGCCAAGGTACGTCCATCCTCGAGCTG 9637 Query 42966 TTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAA 43025 ||| ||||| || || | | ||| || || | || | |||||| || || |||| Sbjct 9636 TTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTT 9577 Query 43026 CTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGG 43084 | ||||| | | | || ||| ||| |||||| || | || || || || |||| Sbjct 9576 AGCCTTGACGTTATCGATGGTATCG-GAGCTCTCGACTTCGAGAGTGATGGTCTTGCCGG 9518 Query 43085 TTAGAGTTTTCACAAAAATTTGCAT 43109 | ||||||||||| ||||||||||| Sbjct 9517 TGAGAGTTTTCACGAAAATTTGCAT 9493 >seq1703 Length=21771 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||||||| || | || ||||| || | || |||||| || | ||||||||||| Sbjct 18823 GCCTCCACGTAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATATTGTAATCGGC 18882 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || || | || || | || || ||||| || || | ||||| ||||| | || Sbjct 18883 CAAGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGG 18942 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || |||| |||| || || | | |||||| ||| || | Sbjct 18943 GATCCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTGTCGATGGTGTCG-GAGCTTTCCA 19001 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 | || | || || || || ||||| ||||||||||| || |||||||| || Sbjct 19002 CCTCGAGGGTGATTGTCTTCCCGGTGAGAGTTTTCACGAAGATTTGCATCTT 19053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381068729418456