Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq12321 165 1e-35
seq20848 113 6e-20
seq20246 113 6e-20
>seq12321
Length=6064
Score = 165 bits (182), Expect = 1e-35
Identities = 408/608 (67%), Gaps = 12/608 (2%)
Strand=Plus/Minus
Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118
|||| || |||||||||||||| || ||||| ||||| || | |||||||| ||
Sbjct 1393 ATCAGGCAGGCGAAATCGCAGTGAAGCCCCTCGTCTCTCGAGATGAGCTCGTTGGAGAAG 1334
Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGA 42177
|| || || ||||| || |||||||| || ||||| || || || ||| | | | || ||
Sbjct 1333 GTCAGACCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCGA-GCAGAAGCTTCCGGA 1275
Query 42178 AAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA--CCGGCA-CT 42234
|||||||| ||||| || || ||||| | | ||||| | || | | | |
Sbjct 1274 GAAGAAGATCCCTTCGACGCAGGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGATCC 1215
Query 42235 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 42294
||| |||||||| ||||| | ||||||||| || || || || || || ||
Sbjct 1214 GTCG---ATCCACTTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGAT 1158
Query 42295 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACT 42354
||| ||||| | || | || || | ||||| | || || |||| || |||||
Sbjct 1157 GGCCCGGAAGAGGTGGTCCCTCTCCTTGTTGTCTTTGATGTAGGTGTCGAGCAGGAGACT 1098
Query 42355 ATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTC 42414
|||||| ||||| || ||||| ||||| || ||||| || |||||||| | |||||
Sbjct 1097 ATACATCTCTGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTC 1038
Query 42415 GGTAACCTGTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCAC 42473
|| ||||| || || | ||| || || || | ||| ||| || || |||||
Sbjct 1037 GGAGACCTGGACGTC-GGACATGAACCGGGAGGCGAGATTCTCGAGGACGATCCCGTCGG 979
Query 42474 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTT-AATTTA 42532
||| || || || |||| || ||||| || || | ||| ||| ||| | ||
Sbjct 978 AGGCGGCGAAGAAGGCCAGGACGTGTTTGATGAAGTGGCGCTCG-CCGTCGTTGAGATTC 920
Query 42533 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCT 42592
| ||| || | || || | || ||||| || | ||||| || || |||||
Sbjct 919 TCCCAGTCGCGTGTGTCGCCGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCG 860
Query 42593 GCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTT 42652
||||| || ||||| | |||||| | | ||||| |||||||| || ||||| | |
Sbjct 859 GCCTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATGCAGAATCTGTCT 800
Query 42653 GGATTTGG 42660
|| ||||
Sbjct 799 GGGGTTGG 792
>seq20848
Length=3109
Score = 113 bits (124), Expect = 6e-20
Identities = 148/205 (72%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236
|||||| || || | ||| | ||| |||| ||| | || | || |||||||| ||||||
Sbjct 2273 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 2332
Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296
||| |||| ||||| || || || |||||||| | ||||| || ||| || ||
Sbjct 2333 ATTCGATGTTCCATTTGTGCCACGAATGTAGCTTCCTGTTGCACGGATGTTGTGAACAGA 2392
Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356
| |||||||||||| || |||| || | ||| || ||| || || ||||| ||
Sbjct 2393 AACACCTATTCCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTTTCATATAT 2452
Query 72357 GCCCTCTATACTATCATCCATCATG 72381
||||| || ||||||||| |||||
Sbjct 2453 TCCCTCAATGCTATCATCCTTCATG 2477
>seq20246
Length=3254
Score = 113 bits (124), Expect = 6e-20
Identities = 148/205 (72%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236
|||||| || || | ||| | ||| |||| ||| | || | || |||||||| ||||||
Sbjct 2443 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 2384
Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296
||| |||| ||||| || || || |||||||| | ||||| || ||| || ||
Sbjct 2383 ATTCGATGTTCCATTTGTGCCACGAATGTAGCTTCCTGTTGCACGGATGTTGTGAACAGA 2324
Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356
| |||||||||||| || |||| || | ||| || ||| || || ||||| ||
Sbjct 2323 AACACCTATTCCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTTTCATATAT 2264
Query 72357 GCCCTCTATACTATCATCCATCATG 72381
||||| || ||||||||| |||||
Sbjct 2263 TCCCTCAATGCTATCATCCTTCATG 2239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670596147716320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |