Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq12321 165 1e-35 seq20848 113 6e-20 seq20246 113 6e-20 >seq12321 Length=6064 Score = 165 bits (182), Expect = 1e-35 Identities = 408/608 (67%), Gaps = 12/608 (2%) Strand=Plus/Minus Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118 |||| || |||||||||||||| || ||||| ||||| || | |||||||| || Sbjct 1393 ATCAGGCAGGCGAAATCGCAGTGAAGCCCCTCGTCTCTCGAGATGAGCTCGTTGGAGAAG 1334 Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGA 42177 || || || ||||| || |||||||| || ||||| || || || ||| | | | || || Sbjct 1333 GTCAGACCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCGA-GCAGAAGCTTCCGGA 1275 Query 42178 AAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA--CCGGCA-CT 42234 |||||||| ||||| || || ||||| | | ||||| | || | | | | Sbjct 1274 GAAGAAGATCCCTTCGACGCAGGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGATCC 1215 Query 42235 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 42294 ||| |||||||| ||||| | ||||||||| || || || || || || || Sbjct 1214 GTCG---ATCCACTTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGAT 1158 Query 42295 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACT 42354 ||| ||||| | || | || || | ||||| | || || |||| || ||||| Sbjct 1157 GGCCCGGAAGAGGTGGTCCCTCTCCTTGTTGTCTTTGATGTAGGTGTCGAGCAGGAGACT 1098 Query 42355 ATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTC 42414 |||||| ||||| || ||||| ||||| || ||||| || |||||||| | ||||| Sbjct 1097 ATACATCTCTGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTC 1038 Query 42415 GGTAACCTGTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCAC 42473 || ||||| || || | ||| || || || | ||| ||| || || ||||| Sbjct 1037 GGAGACCTGGACGTC-GGACATGAACCGGGAGGCGAGATTCTCGAGGACGATCCCGTCGG 979 Query 42474 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTT-AATTTA 42532 ||| || || || |||| || ||||| || || | ||| ||| ||| | || Sbjct 978 AGGCGGCGAAGAAGGCCAGGACGTGTTTGATGAAGTGGCGCTCG-CCGTCGTTGAGATTC 920 Query 42533 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCT 42592 | ||| || | || || | || ||||| || | ||||| || || ||||| Sbjct 919 TCCCAGTCGCGTGTGTCGCCGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCG 860 Query 42593 GCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTT 42652 ||||| || ||||| | |||||| | | ||||| |||||||| || ||||| | | Sbjct 859 GCCTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATGCAGAATCTGTCT 800 Query 42653 GGATTTGG 42660 || |||| Sbjct 799 GGGGTTGG 792 >seq20848 Length=3109 Score = 113 bits (124), Expect = 6e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| || || | ||| | ||| |||| ||| | || | || |||||||| |||||| Sbjct 2273 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 2332 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| |||| ||||| || || || |||||||| | ||||| || ||| || || Sbjct 2333 ATTCGATGTTCCATTTGTGCCACGAATGTAGCTTCCTGTTGCACGGATGTTGTGAACAGA 2392 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | |||||||||||| || |||| || | ||| || ||| || || ||||| || Sbjct 2393 AACACCTATTCCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTTTCATATAT 2452 Query 72357 GCCCTCTATACTATCATCCATCATG 72381 ||||| || ||||||||| ||||| Sbjct 2453 TCCCTCAATGCTATCATCCTTCATG 2477 >seq20246 Length=3254 Score = 113 bits (124), Expect = 6e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| || || | ||| | ||| |||| ||| | || | || |||||||| |||||| Sbjct 2443 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 2384 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| |||| ||||| || || || |||||||| | ||||| || ||| || || Sbjct 2383 ATTCGATGTTCCATTTGTGCCACGAATGTAGCTTCCTGTTGCACGGATGTTGTGAACAGA 2324 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | |||||||||||| || |||| || | ||| || ||| || || ||||| || Sbjct 2323 AACACCTATTCCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTTTCATATAT 2264 Query 72357 GCCCTCTATACTATCATCCATCATG 72381 ||||| || ||||||||| ||||| Sbjct 2263 TCCCTCAATGCTATCATCCTTCATG 2239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670596147716320