Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq25552 95.1 1e-14 seq11485 95.1 1e-14 seq7912 86.0 6e-12 seq1703 82.4 8e-11 >seq25552 Length=2169 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 |||||||| |||||||| || |||||||||| |||||||| ||||| || ||||||||| Sbjct 399 TCTTCGAGCTGTTTACCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATACCTTCTTTG 340 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || ||| | | || | ||||| | || || ||||| | ||| | Sbjct 339 TCTTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAGGACTCGACTTCGAGAGTGATG 280 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||| || | ||||| ||||| || ||||| Sbjct 279 GTCTTGCCCGTTAGGGTTTTCACGAAGATCTGCAT 245 >seq11485 Length=6519 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||||||| || |||| |||||| || || || ||| Sbjct 4674 GTTGACTCCTTCTGGATGTTGTAATCGGCCAGGGTGCGTCCGTCTTCTAGCTGCTTCCCA 4615 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| || | ||||| |||||||| |||||||| ||||| || ||| || Sbjct 4614 GCGAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTG 4555 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || || || | ||| | ||||||||||| | |||| Sbjct 4554 ACATTGTCTATAGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGTGTT 4495 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| |||||||| Sbjct 4494 TTCACGAAAATTTGCAT 4478 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| ||||| || || || ||||||||||| | Sbjct 5160 CCACCACGAAGACGAAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCC 5101 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | || ||||| ||||| ||||| |||| || | ||||| || ||||| Sbjct 5100 AAAGTCCGACCATCCTCGAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGG 5041 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| ||| || ||| | | || | |||||| | | || ||| Sbjct 5040 ATGCCTTCCTTGTCCTGAATCTTCGCTTTCACATTGTCGATCGTGTCAGAGCTCTCCACT 4981 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | || || ||||| | ||| || ||||| || |||||| Sbjct 4980 TCAAGGGTAATGGTTTTACCGGTGAGTGTCTTGACGAAAATCTGCATA 4933 >seq7912 Length=9007 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| | ||||| ||||| || ||||| |||||||| || || ||| || |||||| Sbjct 6581 AACGAGATGAAGCGTAGACTCCTTTTGGATGTTGTAGTCTGCCAATGTTCTGCCGTCTTC 6640 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||| || || || || |||| || | |||||||||||||| || ||||| ||||| Sbjct 6641 GAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGATCGGGAGGGATACCTTCCTTGTCCTG 6700 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||| || ||| | | || | ||||| | | ||| || || | || | ||||| Sbjct 6701 AATCTTGGCTTTGACGTTGTCGATTGTGTCGGAGCTTTCCACCTCGAGGGTGATGGTCTT 6760 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | || || ||||| || ||||| Sbjct 6761 TCCCGTGAGAGTCTTAACGAAGATCTGCAT 6790 >seq1703 Length=21771 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| || || || |||| || || ||||| || ||||||||||| Sbjct 18139 GCCACCACGGAGACGTAACACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAATCAGC 18198 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| || ||||| || || ||||| | ||||| | ||||| || ||||| Sbjct 18199 CAAGGTGCGACCATCCTCGAGCTGCTTCCCAGCGAATATCAGCCTCTGCTGGTCCGGAGG 18258 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || |||||||| ||||| ||| | | || | ||||| | || || Sbjct 18259 GATACCCTCTTTGTCTTGGATTTTCGCTTTCACGTTGTCAATGGTGTCGGAACTCTCCAC 18318 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||| || ||||| || || ||||| || ||||| Sbjct 18319 CTCTAAAGTGATCGTCTTTCCTGTCAACGTCTTAACGAAGATCTGCAT 18366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506604149298240