Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq12321 138 2e-27 seq549 138 2e-27 >seq12321 Length=6064 Score = 138 bits (152), Expect = 2e-27 Identities = 373/559 (67%), Gaps = 14/559 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| |||||||| ||||| | |||||||| ||||| | ||| || ||||| || Sbjct 837 ATCTGGGAGATGTACAAGAAGGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTC 896 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||| ||| ||| ||||||| || | | || ||||| | || || Sbjct 897 TCCGGCGACACACGCGACTGGGAGAATC---TCAACGACGGCGAGCGCCACTTCATCAAA 953 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | |||||||||| |||| |||||| || |||||| ||| ||||| | || Sbjct 954 CACGTCCTGGCCTTCTTCGCCGCCTCCGACGGGATCGTCCTCGAGAATCTCGCCTCCCGG 1013 Query 125199 TTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATGA 125256 ||| | || || | ||| |||| | ||||| || ||||| ||||| ||| || Sbjct 1014 TTCATGTCCGACGTCCAGGTCTCC-GAGGCG-CGTGCCTTCTACGGCTTCCAGATCGCGA 1071 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGC 125316 |||||||| | ||||| || ||||| | ||| | |||| ||||| || | | Sbjct 1072 TTGAGAACATCCACTCAGAGATGTATAGTCTCCTGCTCGACACCTACATCAAAGA-CAAC 1130 Query 125317 AACGTAAAC-ACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 || | | || ||||| || ||||| || | || | | || ||||| Sbjct 1131 AAGGAGAGGGACCACCTCTTCCGGGCCATCGAGACCATCCCCTGCGTCGCGAAGAAGGCC 1190 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 ||||||| || ||||||||| | || ||| ||| || || | || || Sbjct 1191 CAATGGGCCATGAAGTGGATCGACGGATCTCAGACTTT---CGCGGAGAGGATCGTCGCC 1247 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGCTCAA 125494 |||||| ||| || || |||||||| || || || || ||| | ||||| |||||||| Sbjct 1248 TTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTTCTGCT-CGATCTTCTGGCTCAA 1306 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 |||||| || |||||||| || ||||| | |||||| | || || |||||||||| Sbjct 1307 GAAGCGTGGGCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCGAGAGACGAGGG 1366 Query 125555 CCTACACTGTGACTTTGCC 125573 || ||||| || || ||| Sbjct 1367 GCTTCACTGCGATTTCGCC 1385 >seq549 Length=32968 Score = 138 bits (152), Expect = 2e-27 Identities = 378/563 (67%), Gaps = 21/563 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| |||||||| || || | |||||||| ||||| | ||| || ||||| || Sbjct 19786 ATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTC 19845 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||| | ||| ||| |||||| | | || |||||| | || | Sbjct 19846 TCCCAAGACACCCGCGACTGGGAGCAAAACCTCAACGACGGCGAGCGACACTTCGTCAAA 19905 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | |||||||| |||| |||||| || |||||| ||| ||||| | || Sbjct 19906 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATCGTCCTCGAGAATCTCGCCTCCCGT 19965 Query 125199 TTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATGA 125256 ||| | || || | ||| |||| || || || ||||| ||||| ||| || Sbjct 19966 TTCATGTCCGACGTCCAGGTCTCC-GAGGCC-CGCGCCTTCTACGGCTTCCAGATCGCGA 20023 Query 125257 TTGAGAACGTGCACTCGGAAATGTAC--TCTACACTGATTGACATGTACATTCGCGATCC 125314 | |||||| | ||||| || |||||| ||| | || | |||| ||||| || | Sbjct 20024 TCGAGAACATCCACTCCGAGATGTACAGTCTCCTCTTA--GACACTTACATCAAAGA-CA 20080 Query 125315 GCAACGTAA---ACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAA 125371 ||| | | || ||| ||||| ||| ||||| ||| | || | || ||||| Sbjct 20081 ACAAGGAGAGGGAC-CAT-CTCTTCCGCGCGATCGAGACGATCCCTTGCGTAAAGAAAAA 20138 Query 125372 GGCTCAATGGGTGATTCGGTGGATCGAT-GACGACAAGTCTTCGTACGCCGACAGACTGG 125430 ||| ||||||| | |||||||||| | | || | ||| |||||| || | | Sbjct 20139 GGCCCAATGGGCCTTGAAGTGGATCGATGGGCCTCAGGCCTT----CGCCGAGAGGATCG 20194 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG-TTTTGCGGCCATCTTTTGG 125489 |||| ||||| ||| || || |||||||| ||||| || || ||| | ||||| ||| Sbjct 20195 TGGCGTTCGCTTGCGTGGAAGGGATCTTCTTCTCGGGCAGCTTCTGC-TCGATCTTCTGG 20253 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 || |||||||| || |||||||| || || || | |||||| | || || ||||| Sbjct 20254 CTGAAGAAGCGTGGGCTCATGCCGGGTCTCACCTTCTCCAACGAGCTGATCTCGAGAGAC 20313 Query 125550 GAGGGCCTACACTGTGACTTTGC 125572 || ||||| ||||| ||||| || Sbjct 20314 GAAGGCCTCCACTGCGACTTCGC 20336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740459571948320