Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq12321 138 2e-27
seq549 138 2e-27
>seq12321
Length=6064
Score = 138 bits (152), Expect = 2e-27
Identities = 373/559 (67%), Gaps = 14/559 (3%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||||| |||||||| ||||| | |||||||| ||||| | ||| || ||||| ||
Sbjct 837 ATCTGGGAGATGTACAAGAAGGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTC 896
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
||| ||| ||| ||||||| || | | || ||||| | || ||
Sbjct 897 TCCGGCGACACACGCGACTGGGAGAATC---TCAACGACGGCGAGCGCCACTTCATCAAA 953
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198
||| | |||||||||| |||| |||||| || |||||| ||| ||||| | ||
Sbjct 954 CACGTCCTGGCCTTCTTCGCCGCCTCCGACGGGATCGTCCTCGAGAATCTCGCCTCCCGG 1013
Query 125199 TTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATGA 125256
||| | || || | ||| |||| | ||||| || ||||| ||||| ||| ||
Sbjct 1014 TTCATGTCCGACGTCCAGGTCTCC-GAGGCG-CGTGCCTTCTACGGCTTCCAGATCGCGA 1071
Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGC 125316
|||||||| | ||||| || ||||| | ||| | |||| ||||| || | |
Sbjct 1072 TTGAGAACATCCACTCAGAGATGTATAGTCTCCTGCTCGACACCTACATCAAAGA-CAAC 1130
Query 125317 AACGTAAAC-ACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375
|| | | || ||||| || ||||| || | || | | || |||||
Sbjct 1131 AAGGAGAGGGACCACCTCTTCCGGGCCATCGAGACCATCCCCTGCGTCGCGAAGAAGGCC 1190
Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435
||||||| || ||||||||| | || ||| ||| || || | || ||
Sbjct 1191 CAATGGGCCATGAAGTGGATCGACGGATCTCAGACTTT---CGCGGAGAGGATCGTCGCC 1247
Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGCTCAA 125494
|||||| ||| || || |||||||| || || || || ||| | ||||| ||||||||
Sbjct 1248 TTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTTCTGCT-CGATCTTCTGGCTCAA 1306
Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554
|||||| || |||||||| || ||||| | |||||| | || || ||||||||||
Sbjct 1307 GAAGCGTGGGCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCGAGAGACGAGGG 1366
Query 125555 CCTACACTGTGACTTTGCC 125573
|| ||||| || || |||
Sbjct 1367 GCTTCACTGCGATTTCGCC 1385
>seq549
Length=32968
Score = 138 bits (152), Expect = 2e-27
Identities = 378/563 (67%), Gaps = 21/563 (4%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||||| |||||||| || || | |||||||| ||||| | ||| || ||||| ||
Sbjct 19786 ATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTC 19845
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
||| | ||| ||| |||||| | | || |||||| | || |
Sbjct 19846 TCCCAAGACACCCGCGACTGGGAGCAAAACCTCAACGACGGCGAGCGACACTTCGTCAAA 19905
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198
||| | | |||||||| |||| |||||| || |||||| ||| ||||| | ||
Sbjct 19906 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATCGTCCTCGAGAATCTCGCCTCCCGT 19965
Query 125199 TTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATGA 125256
||| | || || | ||| |||| || || || ||||| ||||| ||| ||
Sbjct 19966 TTCATGTCCGACGTCCAGGTCTCC-GAGGCC-CGCGCCTTCTACGGCTTCCAGATCGCGA 20023
Query 125257 TTGAGAACGTGCACTCGGAAATGTAC--TCTACACTGATTGACATGTACATTCGCGATCC 125314
| |||||| | ||||| || |||||| ||| | || | |||| ||||| || |
Sbjct 20024 TCGAGAACATCCACTCCGAGATGTACAGTCTCCTCTTA--GACACTTACATCAAAGA-CA 20080
Query 125315 GCAACGTAA---ACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAA 125371
||| | | || ||| ||||| ||| ||||| ||| | || | || |||||
Sbjct 20081 ACAAGGAGAGGGAC-CAT-CTCTTCCGCGCGATCGAGACGATCCCTTGCGTAAAGAAAAA 20138
Query 125372 GGCTCAATGGGTGATTCGGTGGATCGAT-GACGACAAGTCTTCGTACGCCGACAGACTGG 125430
||| ||||||| | |||||||||| | | || | ||| |||||| || | |
Sbjct 20139 GGCCCAATGGGCCTTGAAGTGGATCGATGGGCCTCAGGCCTT----CGCCGAGAGGATCG 20194
Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG-TTTTGCGGCCATCTTTTGG 125489
|||| ||||| ||| || || |||||||| ||||| || || ||| | ||||| |||
Sbjct 20195 TGGCGTTCGCTTGCGTGGAAGGGATCTTCTTCTCGGGCAGCTTCTGC-TCGATCTTCTGG 20253
Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549
|| |||||||| || |||||||| || || || | |||||| | || || |||||
Sbjct 20254 CTGAAGAAGCGTGGGCTCATGCCGGGTCTCACCTTCTCCAACGAGCTGATCTCGAGAGAC 20313
Query 125550 GAGGGCCTACACTGTGACTTTGC 125572
|| ||||| ||||| ||||| ||
Sbjct 20314 GAAGGCCTCCACTGCGACTTCGC 20336
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740459571948320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |