Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq4396 91.5 1e-13 seq14782 87.8 1e-12 >seq4396 Length=13502 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 ||||| | || | ||| || || |||||||| || ||||| || ||||||||||| || Sbjct 12717 CCACCACGCAGACGTAACACCAAGTGAAGGGTTGACTCTTTCTGAATGTTGTAATCAGCC 12658 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | | || || | || ||||||||| | || | ||| || ||||| ||| Sbjct 12657 AAG-GTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGG 12599 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || || || ||||| ||| ||| ||| || | || ||||| ||| | || || Sbjct 12598 GATCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCCAC 12539 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || || ||||| || || |||||||| |||||| Sbjct 12538 CTCCAAAGTGATAGTCTTCCCGGTCAGTGTCTTAACAAAAATCTGCATA 12490 >seq14782 Length=4961 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| | | ||| | ||||| || || || || || ||||||||||| Sbjct 1969 CCTCCTCTCAGACGGAGAACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCCGCG 2028 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | || ||||||| | || || || ||| | |||| ||| || ||||| ||| Sbjct 2029 AGGGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGG 2088 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||| ||| ||| ||| | || || || ||| ||| || Sbjct 2089 ATCCCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCGGATGATTCGACC 2148 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 |||| ||| || || || || || || ||||| || || || ||||| ||| Sbjct 2149 TCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTT 2199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361893469132812