Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq11485 102 7e-17 seq37186 95.1 1e-14 seq24793 89.7 4e-13 seq12662 89.7 4e-13 seq964 86.0 5e-12 seq7912 82.4 6e-11 >seq11485 Length=6519 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||||||||| || || |||||||| |||| || | ||||| Sbjct 5142 ACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCCAAAGTCCGACCATCCTCG 5083 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || || | || ||||||||||| ||| || | ||| || ||||| | Sbjct 5082 AGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGA 5023 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || ||| ||| || | | ||| || || |||| ||| | ||||||||||||| Sbjct 5022 ATCTTCGCTTTCACATTGTCGATCGTGTCAGAGCTCTCCACTTCAAGGGTAATGGTTTTA 4963 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||| ||||| ||||| Sbjct 4962 CCGGTGAGTGTCTTGACGAAAATCTGCAT 4934 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 18844 CGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACC 18903 |||||||||||| ||||||||||||||||| | || | ||||| ||||||||||| Sbjct 4903 CGTAGACTCCTTCTGAATATTGTAATCCGCAAGCGTGCGTCCATCCTCAAGCTGTTTACC 4844 Query 18904 CGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTT 18963 || | || ||||||||||| ||| || | || || ||||| || || ||| Sbjct 4843 AGCGAAGATGAGTCTCTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCTTT 4784 Query 18964 TACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | | | ||| ||| ||| || | || ||||| || ||||| ||||| Sbjct 4783 CACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCTGTCAAAGT 4724 Query 19024 TTTGACAAAAATTTGCAT 19041 ||||||||||| ||||| Sbjct 4723 CTTGACAAAAATCTGCAT 4706 >seq37186 Length=985 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||| ||||| || ||||| || |||| |||| || ||||||||| |||||| || Sbjct 470 GTCGACTCTTTTTGGATGTTGTAGTCAGCCAATGTTCTGCCGTCCTCCAACTGTTTCCCG 529 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | ||||| ||||||||||| || | ||||||||||| ||| || ||| Sbjct 530 GCGAAGATAAGCCTCTGCTGATCGGGAGGGATACCCTCTTTGTCCTGAATCTTGGCTTTA 589 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | ||| || ||| ||| |||| ||| || || || || || | ||| Sbjct 590 ACGTTGTCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGATCGTCTTCCCAGTGAGAGTC 649 Query 19025 TTGACAAAAATTTGCAT 19041 || || || |||||||| Sbjct 650 TTAACGAAGATTTGCAT 666 >seq24793 Length=2311 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| || || |||||||| || | || || ||||||| ||||| || || Sbjct 1645 GTCGACTCCTTCTGGATGTTGTAATCAGCGAGAGTCCTGCCGTCCTCGAGCTGCTTTCCG 1704 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | ||||| |||||||||||| ||| | |||||| ||||| ||| || ||| Sbjct 1705 GCGAAGATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCTTTA 1764 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | ||| || || ||| |||| ||| || || || || || | ||| Sbjct 1765 ACGTTGTCGATGGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTC 1824 Query 19025 TTGACAAAAATTTGCAT 19041 || |||||||| ||||| Sbjct 1825 TTAACAAAAATCTGCAT 1841 >seq12662 Length=5898 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| || || |||||||| || | || || ||||||| ||||| || || Sbjct 3457 GTCGACTCCTTCTGGATGTTGTAATCAGCGAGAGTCCTGCCGTCCTCGAGCTGCTTTCCG 3398 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | ||||| |||||||||||| ||| | |||||| ||||| ||| || ||| Sbjct 3397 GCGAAGATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCTTTA 3338 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | ||| || || ||| |||| ||| || || || || || | ||| Sbjct 3337 ACGTTGTCGATGGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTC 3278 Query 19025 TTGACAAAAATTTGCAT 19041 || |||||||| ||||| Sbjct 3277 TTAACAAAAATCTGCAT 3261 >seq964 Length=27231 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || || | ||| | ||| |||||||| || || ||||| || || | || | ||| Sbjct 9932 AAGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGACCATCC 9873 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||||||| ||||| ||| ||||||| |||||||||||| || | |||||| ||||| Sbjct 9872 TCCAGCTGCTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGGGATGCCCTCCTTGTCC 9813 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 || ||| || || | | | | ||| ||| ||| || | || ||||| Sbjct 9812 TGGATCTTCGCCTTGACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAGAGTGATGGTC 9753 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || ||||| ||||| || || ||||| Sbjct 9752 TTTCCCGTCAAAGTCTTGACGAAGATCTGCAT 9721 >seq7912 Length=9007 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 18844 CGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACC 18903 ||||||||||||||| || ||||| || |||| |||| || |||| || ||||| || || Sbjct 6593 CGTAGACTCCTTTTGGATGTTGTAGTCTGCCAATGTTCTGCCGTCTTCGAGCTGCTTGCC 6652 Query 18904 CGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTT 18963 || | || || ||||||||||| || | || || ||||| ||| || ||| Sbjct 6653 GGCGAAGATGAGCCTCTGCTGATCGGGAGGGATACCTTCCTTGTCCTGAATCTTGGCTTT 6712 Query 18964 TACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | ||| || ||| ||| |||| ||| ||||| || || || | ||| Sbjct 6713 GACGTTGTCGATTGTGTCGGAGCTTTCCACCTCGAGGGTGATGGTCTTTCCCGTGAGAGT 6772 Query 19024 TTTGACAAAAATTTGCAT 19041 || || || || ||||| Sbjct 6773 CTTAACGAAGATCTGCAT 6790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414245734708408