Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq11485 102 7e-17
seq37186 95.1 1e-14
seq24793 89.7 4e-13
seq12662 89.7 4e-13
seq964 86.0 5e-12
seq7912 82.4 6e-11
>seq11485
Length=6519
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892
|||| ||| | ||||||||||| || || |||||||| |||| || | |||||
Sbjct 5142 ACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCCAAAGTCCGACCATCCTCG 5083
Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952
|||||||| || || | || ||||||||||| ||| || | ||| || ||||| |
Sbjct 5082 AGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGA 5023
Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012
|| ||| ||| || | | ||| || || |||| ||| | |||||||||||||
Sbjct 5022 ATCTTCGCTTTCACATTGTCGATCGTGTCAGAGCTCTCCACTTCAAGGGTAATGGTTTTA 4963
Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || | || ||||| ||||| |||||
Sbjct 4962 CCGGTGAGTGTCTTGACGAAAATCTGCAT 4934
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 18844 CGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACC 18903
|||||||||||| ||||||||||||||||| | || | ||||| |||||||||||
Sbjct 4903 CGTAGACTCCTTCTGAATATTGTAATCCGCAAGCGTGCGTCCATCCTCAAGCTGTTTACC 4844
Query 18904 CGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTT 18963
|| | || ||||||||||| ||| || | || || ||||| || || |||
Sbjct 4843 AGCGAAGATGAGTCTCTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCTTT 4784
Query 18964 TACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023
|| | | | | ||| ||| ||| || | || ||||| || ||||| |||||
Sbjct 4783 CACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCTGTCAAAGT 4724
Query 19024 TTTGACAAAAATTTGCAT 19041
||||||||||| |||||
Sbjct 4723 CTTGACAAAAATCTGCAT 4706
>seq37186
Length=985
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| ||||| ||||| || ||||| || |||| |||| || ||||||||| |||||| ||
Sbjct 470 GTCGACTCTTTTTGGATGTTGTAGTCAGCCAATGTTCTGCCGTCCTCCAACTGTTTCCCG 529
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
|| | ||||| ||||||||||| || | ||||||||||| ||| || |||
Sbjct 530 GCGAAGATAAGCCTCTGCTGATCGGGAGGGATACCCTCTTTGTCCTGAATCTTGGCTTTA 589
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | ||| || ||| ||| |||| ||| || || || || || | |||
Sbjct 590 ACGTTGTCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGATCGTCTTCCCAGTGAGAGTC 649
Query 19025 TTGACAAAAATTTGCAT 19041
|| || || ||||||||
Sbjct 650 TTAACGAAGATTTGCAT 666
>seq24793
Length=2311
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| |||||||| || || |||||||| || | || || ||||||| ||||| || ||
Sbjct 1645 GTCGACTCCTTCTGGATGTTGTAATCAGCGAGAGTCCTGCCGTCCTCGAGCTGCTTTCCG 1704
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
|| | ||||| |||||||||||| ||| | |||||| ||||| ||| || |||
Sbjct 1705 GCGAAGATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCTTTA 1764
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | ||| || || ||| |||| ||| || || || || || | |||
Sbjct 1765 ACGTTGTCGATGGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTC 1824
Query 19025 TTGACAAAAATTTGCAT 19041
|| |||||||| |||||
Sbjct 1825 TTAACAAAAATCTGCAT 1841
>seq12662
Length=5898
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| |||||||| || || |||||||| || | || || ||||||| ||||| || ||
Sbjct 3457 GTCGACTCCTTCTGGATGTTGTAATCAGCGAGAGTCCTGCCGTCCTCGAGCTGCTTTCCG 3398
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
|| | ||||| |||||||||||| ||| | |||||| ||||| ||| || |||
Sbjct 3397 GCGAAGATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCTTTA 3338
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | ||| || || ||| |||| ||| || || || || || | |||
Sbjct 3337 ACGTTGTCGATGGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTC 3278
Query 19025 TTGACAAAAATTTGCAT 19041
|| |||||||| |||||
Sbjct 3277 TTAACAAAAATCTGCAT 3261
>seq964
Length=27231
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889
|| || | ||| | ||| |||||||| || || ||||| || || | || | |||
Sbjct 9932 AAGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGACCATCC 9873
Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949
|||||||| ||||| ||| ||||||| |||||||||||| || | |||||| |||||
Sbjct 9872 TCCAGCTGCTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGGGATGCCCTCCTTGTCC 9813
Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009
|| ||| || || | | | | ||| ||| ||| || | || |||||
Sbjct 9812 TGGATCTTCGCCTTGACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAGAGTGATGGTC 9753
Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || || ||||| ||||| || || |||||
Sbjct 9752 TTTCCCGTCAAAGTCTTGACGAAGATCTGCAT 9721
>seq7912
Length=9007
Score = 82.4 bits (90), Expect = 6e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 18844 CGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACC 18903
||||||||||||||| || ||||| || |||| |||| || |||| || ||||| || ||
Sbjct 6593 CGTAGACTCCTTTTGGATGTTGTAGTCTGCCAATGTTCTGCCGTCTTCGAGCTGCTTGCC 6652
Query 18904 CGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTT 18963
|| | || || ||||||||||| || | || || ||||| ||| || |||
Sbjct 6653 GGCGAAGATGAGCCTCTGCTGATCGGGAGGGATACCTTCCTTGTCCTGAATCTTGGCTTT 6712
Query 18964 TACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023
|| | | ||| || ||| ||| |||| ||| ||||| || || || | |||
Sbjct 6713 GACGTTGTCGATTGTGTCGGAGCTTTCCACCTCGAGGGTGATGGTCTTTCCCGTGAGAGT 6772
Query 19024 TTTGACAAAAATTTGCAT 19041
|| || || || |||||
Sbjct 6773 CTTAACGAAGATCTGCAT 6790
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414245734708408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |