Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1703 84.2 2e-11 >seq1703 Length=21771 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| |||| | ||| ||||| || || ||||||||||| || |||||||| || | Sbjct 18368 CCTCCACGTAGACGCAAGACCAAGTGAAGCGTAGATTCTTTCTGGATGTTGTAGTCAGCA 18427 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||| ||||| || || || ||| | || | |||||| || || || Sbjct 18428 AGAGTCCTCCCATCCTCCAACTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGTGGG 18487 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGT 20160 | ||||| || || ||| || || || | | ||| || |||| || | ||| Sbjct 18488 ATCCCTTCCTTATCCTGAATCTTAGCCTTGACATTGTCAATAGTATCG-GAGCTCTCCAC 18546 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||| || || || ||||| || |||||||| || ||||| Sbjct 18547 CTCCAAAGTAATAGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 18594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419256178741692