Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq4396 109 5e-19
seq964 105 6e-18
seq20570 98.7 8e-16
seq1703 95.1 1e-14
seq24793 91.5 1e-13
seq14782 91.5 1e-13
seq12662 91.5 1e-13
seq25552 86.0 5e-12
seq11485 86.0 5e-12
>seq4396
Length=13502
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 48497 AAACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCA 48556
||||| || |||| | |||||| || ||||| || ||| || |||||||||||||||
Sbjct 12720 AAACCACCACGCAGACGTAACACCAAGTGAAGGGTTGACTCTTTCTGAATGTTGTAATCA 12661
Query 48557 GCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACC 48616
||||| || | ||||| |||||||| || || | || | ||||||||| |||
Sbjct 12660 GCCAAGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGT 12601
Query 48617 GGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCC 48676
|| | | ||||||||| ||| || ||||| | ||||| |||| ||||
Sbjct 12600 GGGATCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCC 12541
Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | || || || || ||||| || || || ||||||||||||||
Sbjct 12540 ACCTCCAAAGTGATAGTCTTCCCGGTCAGTGTCTTAACAAAAATCTGCAT 12491
>seq964
Length=27231
Score = 105 bits (116), Expect = 6e-18
Identities = 165/231 (71%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || | |||||| | || | ||| || || |||||| || || |||||||| ||
Sbjct 9720 ACCACCTCTCAACCTGAGAACGAGATGGAGAGTCGACTCCTTCTGGATATTGTAATCGGC 9661
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
||| || | ||||| ||||| |||||| || | || | | |||||| ||| ||
Sbjct 9660 CAAGGTACGTCCATCCTCGAGCTGTTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGAGG 9601
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTC-CG 48677
| || |||||||||| || || ||||| | |||||||||| || ||| ||
Sbjct 9600 AATACCTTCCTTGTCCTGGATCTTAGCCTTGACGTTATCGATGGTATCGG-AG-CTCTCG 9543
Query 48678 TCT-CGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
|| ||| || ||||| || ||||||||||||||||| ||||| ||||||
Sbjct 9542 ACTTCGAGAGTGATGGTCTTGCCGGTGAGAGTTTTCACGAAAATTTGCATC 9492
>seq20570
Length=3172
Score = 98.7 bits (108), Expect = 8e-16
Identities = 152/215 (71%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574
||||| || ||||| || |||||| || |||||||| |||||||| || | |||||
Sbjct 307 AACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTTCTCCCGTCC 366
Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634
|||| |||||| || || | || | | |||||||||| || | | ||||||||||
Sbjct 367 TCCAACTGCTTTCCTGCGAAGATAAGCCTCTGCTGATCCGGAGGAATCCCTTCCTTGTCC 426
Query 48635 ATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGG 48692
|| || ||| | | | || ||||| || | ||| ||||| || || |
Sbjct 427 TGGATCTTGGCCTTAACGTTGTCG--ATGGTGTCAGAGCTTTCCACCTCGAGGGTGATTG 484
Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
| || || |||||||||||||| || |||||||||
Sbjct 485 TCTTTCCTGTGAGAGTTTTCACGAAGATCTGCATC 519
>seq1703
Length=21771
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574
|| || || ||||| || |||||| || || |||||||| ||||| || | |||
Sbjct 18839 AAGACCAAGTGAAGCGTAGACTCCTTCTGGATATTGTAATCGGCCAAGGTGCGACCATCC 18898
Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634
|| |||||||| ||| || | || | ||||||||||||| || | | ||||||||||
Sbjct 18899 TCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGGATCCCTTCCTTGTCC 18958
Query 48635 ATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693
|| || |||| | | | ||||| |||| ||| ||||| || || ||
Sbjct 18959 TGGATCTT-GGCTTTCACGTTGTCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGATTGT 19017
Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
|| ||||||||||||||||| || || ||||||
Sbjct 19018 CTTCCCGGTGAGAGTTTTCACGAAGATTTGCATC 19051
>seq24793
Length=2311
Score = 91.5 bits (100), Expect = 1e-13
Identities = 162/231 (70%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || || | ||| | || | |||||| || |||||| || ||||||||||||||
Sbjct 1614 ACCACCACGGAGCCTGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGC 1673
Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
| | | || ||||||| |||||||| ||| || | || | | |||||||||| |
Sbjct 1674 GAGAGTCCTGC-CGTCCTCGAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGGG 1732
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCC 48676
| | | ||||||||| ||| || |||| | | | | ||||| || | |||
Sbjct 1733 GAATGCCCTCCTTGTCCTGAATCTTG-GCTTTAACGTTGTCGATGGTGTCTGAGCTTTCC 1791
Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
||||| || || || || || |||||||| || |||||||||||||||
Sbjct 1792 ACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTCTTAACAAAAATCTGCATC 1842
>seq14782
Length=4961
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTC-GTCCTCCAGCTG 48582
||||| || |||||| || ||||||||||| || | ||| || ||| ||||||||
Sbjct 1993 TGAAGAGTCGACTCCTTCTGGATGTTGTAATCCGCGAGG-GTCCTTCCGTCTTCCAGCTG 2051
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||| ||| || | || | ||||||||| ||| || | | |||||||||| ||| ||
Sbjct 2052 CTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCCTGAATCTT 2111
Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702
||||| | | || || |||| || || ||| | ||||| || || || ||
Sbjct 2112 GGCCTTGACATTGTCGATCGTGTCGGATGATTCGACCTCTAGGGTTATCGTCTTCCCCGT 2171
Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726
|| |||||||| || ||||||||
Sbjct 2172 TAGGGTTTTCACGAAGATCTGCAT 2195
>seq12662
Length=5898
Score = 91.5 bits (100), Expect = 1e-13
Identities = 162/231 (70%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || || | ||| | || | |||||| || |||||| || ||||||||||||||
Sbjct 3488 ACCACCACGGAGCCTGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGC 3429
Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
| | | || ||||||| |||||||| ||| || | || | | |||||||||| |
Sbjct 3428 GAGAGTCCTGC-CGTCCTCGAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGGG 3370
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCC 48676
| | | ||||||||| ||| || |||| | | | | ||||| || | |||
Sbjct 3369 GAATGCCCTCCTTGTCCTGAATCTTG-GCTTTAACGTTGTCGATGGTGTCTGAGCTTTCC 3311
Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
||||| || || || || || |||||||| || |||||||||||||||
Sbjct 3310 ACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTCTTAACAAAAATCTGCATC 3260
>seq25552
Length=2169
Score = 86.0 bits (94), Expect = 5e-12
Identities = 135/192 (70%), Gaps = 1/192 (1%)
Strand=Plus/Minus
Query 48537 CCTTT-TGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595
||||| || |||||||| |||||||| || | || || ||||| |||||| || |
Sbjct 435 CCTTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTACCGGCGAAG 376
Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655
|| | ||||||||||||| || | || ||| ||||| || || |||| |
Sbjct 375 ATCAGACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTG 316
Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715
| ||||| |||| ||||| |||| || ||||| || || || || ||||||||
Sbjct 315 TCGATGGTGTCGGAGGACTCGACTTCGAGAGTGATGGTCTTGCCCGTTAGGGTTTTCACG 256
Query 48716 AAAATCTGCATC 48727
|| |||||||||
Sbjct 255 AAGATCTGCATC 244
>seq11485
Length=6519
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577
|| || ||||| || |||||| || ||||||||||||||||| || | |||||
Sbjct 5142 ACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCCAAAGTCCGACCATCCTCG 5083
Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637
||||| || || || | || | | |||||| ||| || | | |||||||||| |
Sbjct 5082 AGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGA 5023
Query 48638 ATTTTCTGCTT---GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694
|| ||| |||| || | || || || || | |||| || | || ||||||
Sbjct 5022 ATCTTC-GCTTTCACATTGTCG--ATCGTGTCAGAGCTCTCCACTTCAAGGGTAATGGTT 4966
Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||||||||||| || || || |||||||||||
Sbjct 4965 TTACCGGTGAGTGTCTTGACGAAAATCTGCAT 4934
Score = 82.4 bits (90), Expect = 6e-11
Identities = 134/193 (69%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| || ||||||||||| |||| || |||| || |||||||| || || |
Sbjct 4669 CTCCTTCTGGATGTTGTAATCGGCCAGGGTGCGTCCGTCTTCTAGCTGCTTCCCAGCGAA 4610
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654
|| | | |||||| || || | | |||||||||| || || ||||| |
Sbjct 4609 GATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATT 4550
Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714
|||| || |||| ||| ||||| || ||||| || |||||||| ||||||||
Sbjct 4549 GTCTATAGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGTGTTTTCAC 4490
Query 48715 AAAAATCTGCATC 48727
||||| ||||||
Sbjct 4489 GAAAATTTGCATC 4477
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420918865976732
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