Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq2054 132 4e-26
seq20570 131 2e-25
seq7912 125 6e-24
seq964 120 3e-22
seq1703 118 9e-22
seq4396 113 4e-20
seq37186 105 6e-18
seq25552 105 6e-18
seq1045 102 7e-17
seq14782 98.7 9e-16
seq12662 93.3 4e-14
seq24793 91.5 1e-13
seq11485 91.5 1e-13
seq3667 89.7 5e-13
seq806 86.0 6e-12
>seq2054
Length=20018
Score = 132 bits (146), Expect = 4e-26
Identities = 123/156 (79%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| || |||||||| ||| | ||||| ||||| |||||||||||||| |||||||||||
Sbjct 3238 ATCTTCGAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGAGGGATACCTTCTTT 3297
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | || || |||||||| | ||| ||||| | | ||||| || | |||||
Sbjct 3298 GTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGAT 3357
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| ||||| || || |||||||| |||||||||||
Sbjct 3358 GGTCTTTCCGGTTAGGGTTTTCACGAAGATCTGCAT 3393
>seq20570
Length=3172
Score = 131 bits (144), Expect = 2e-25
Identities = 158/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||||||||||||| | ||||| ||||| || | ||| || || || || |
Sbjct 304 CGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTTCTCCCG 363
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||||| ||| ||||| | ||||| | || |||||||| |||||||| ||||| |||
Sbjct 364 TCCTCCAACTGCTTTCCTGCGAAGATAAGCCTCTGCTGATCCGGAGGAATCCCTTCCTTG 423
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || ||||| ||| | ||| ||||||| | || || || | |||||
Sbjct 424 TCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATT 483
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| ||||| || ||||||||||| |||||||||||
Sbjct 484 GTCTTTCCTGTGAGAGTTTTCACGAAGATCTGCAT 518
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 94805 TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGT 94864
|||||||| || ||||| || | ||| || || | ||| | |||||| || ||
Sbjct 88 TGCAAAGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCGAGTTGC 147
Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924
|| ||| ||||||| || || ||||| || || || || || || || || | || ||
Sbjct 148 TTGCCGGCAAAGATCAACCTCTGCTGGTCAGGTGGGATCCCCTCCTTATCCTGGATCTTA 207
Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984
||||| ||| | | | |||||| | | || || || | ||||| || ||||| ||
Sbjct 208 GCCTTAACGTTGTCAATAGTGTCGGAGCTCTCCACCTCCAAAGTGATTGTCTTTCCGGTC 267
Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007
| || || ||||||||||||||
Sbjct 268 AATGTCTTGACAAAGATCTGCAT 290
>seq7912
Length=9007
Score = 125 bits (138), Expect = 6e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
||||| | || |||||||||||||| | || || |||||||| | ||| || |||
Sbjct 6336 CCTCCACGCAGACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGCT 6395
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| |||||| |||||||| || | ||||| | || ||||| || |||||
Sbjct 6396 AAGGTGCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGCCTCTGCTGGTCCGGAGGG 6455
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
||||| || ||||| | || || ||||||||| | | | ||||| | | || ||
Sbjct 6456 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAACC 6515
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| | || ||||| |||||||| | ||| || ||||||||||||||||
Sbjct 6516 TCCAAAGTAATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCATGC 6564
Score = 113 bits (124), Expect = 4e-20
Identities = 155/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||||||||||||| | || || |||||||| | || || ||| | ||| |
Sbjct 6120 CGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATATTGTAGTCGGCTAAGGTGCGACCA 6179
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||| ||||| || || | ||||| | | ||||| || ||||| |||||||| ||
Sbjct 6180 TCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTA 6239
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || |||||||| | | | ||||||| | || || || | |||||||
Sbjct 6240 TCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCCACCTCCAACGTGATG 6299
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| || || ||||| || || ||||||||||||||||
Sbjct 6300 GTCTTGCCGGTAAGTGTCTTGACAAAGATCTGCATGC 6336
Score = 113 bits (124), Expect = 4e-20
Identities = 145/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870
||||| |||||||| | ||| || || || || || || || ||||| || |||
Sbjct 6594 GTAGACTCCTTTTGGATGTTGTAGTCTGCCAATGTTCTGCCGTCTTCGAGCTGCTTGCCG 6653
Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930
| ||||| | || |||||||| ||||| |||||||| ||||| | ||| || || |||
Sbjct 6654 GCGAAGATGAGCCTCTGCTGATCGGGAGGGATACCTTCCTTGTCCTGAATCTTGGCTTTG 6713
Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990
||| | ||| ||||| | | || || || | |||||||| ||||| || |||||
Sbjct 6714 ACGTTGTCGATTGTGTCGGAGCTTTCCACCTCGAGGGTGATGGTCTTTCCCGTGAGAGTC 6773
Query 94991 TTCACAAAGATCTGCATGCT 95010
|| || ||||||||||| ||
Sbjct 6774 TTAACGAAGATCTGCATCCT 6793
>seq964
Length=27231
Score = 120 bits (132), Expect = 3e-22
Identities = 160/219 (73%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851
|||||||| | ||| | || || ||||| || | || ||||| || || || ||
Sbjct 10391 CGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCTG-CA-AGCGTACGAC 10334
Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910
|||||| |||||||| || | ||||| | ||| ||||| || || || || ||||| |
Sbjct 10333 CATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGTGGGATCCCTTCCT 10274
Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970
|||| | ||| || ||||||||| ||| ||||||| | || || || | ||||
Sbjct 10273 TGTCCTGAATCTTAGCCTTGACGTTATCGATCGTGTCAGAGCTCTCCACCTCCAAAGTGA 10214
Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
||||||| ||||| || || |||||||| ||||||||||
Sbjct 10213 TGGTTTTGCCAGTGAGGGTCTTCACAAAAATCTGCATGC 10175
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| |||||||| | | || | || | ||| || ||||| || | || |||||| |
Sbjct 9719 CCACCTCTCAACCTGAGAACGAGATGGAGAGTCGACTCCTTCTGGATATTGTAATCGGCC 9660
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| || |||||| |||||||| ||| | ||||| | || ||||| || ||||||
Sbjct 9659 AAGGTACGTCCATCCTCGAGCTGTTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGA 9600
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|||||||| ||||| | || || ||||||||| ||| || || | | |||||
Sbjct 9599 ATACCTTCCTTGTCCTGGATCTTAGCCTTGACGTTATCGATGGTATCGGAGCTCTCGACT 9540
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | |||||||| || || || ||||||||||| || || |||||
Sbjct 9539 TCGAGAGTGATGGTCTTGCCGGTGAGAGTTTTCACGAAAATTTGCAT 9493
Score = 104 bits (114), Expect = 2e-17
Identities = 169/241 (70%), Gaps = 2/241 (1%)
Strand=Plus/Minus
Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827
|||| | | || || ||||| | ||| | ||| | |||| ||||| || || || |
Sbjct 10188 AAAAATCTGCATGCCACCTCTGAGTCGAAGCACAAGATGCAGCGTAGACTCTTTCTGAAT 10129
Query 94828 GTTATAATC-GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886
||| || || ||| | ||| |||||||||||| || ||| ||||||| | || |
Sbjct 10128 GTTGTAGTCAGCT-AGCGTGCGTCCATCCTCCAGCTGCTTACCGGCAAAGATGAGCCTCT 10070
Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946
|||| || || || ||||| ||||| || | || || ||||||||| | | | ||||
Sbjct 10069 GCTGGTCCGGTGGGATACCCTCTTTATCCTGGATCTTAGCCTTGACGTTGTCAATGGTGT 10010
Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006
| | | || || || | ||||||||||| || || || || || |||||||| ||||
Sbjct 10009 CTGAGCTCTCAACCTCCAAAGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCA 9950
Query 95007 T 95007
|
Sbjct 9949 T 9949
Score = 93.3 bits (102), Expect = 4e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
|||||||||||| || || |||| || | || |||||||| ||||| || || || ||
Sbjct 9876 ATCCTCCAGCTGCTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGGGATGCCCTCCTT 9817
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | || || |||||||| | | | |||||| | | || || || | |||||
Sbjct 9816 GTCCTGGATCTTCGCCTTGACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAGAGTGAT 9757
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| ||||| || | ||| || || |||||||||||
Sbjct 9756 GGTCTTTCCCGTCAAAGTCTTGACGAAGATCTGCAT 9721
Score = 87.8 bits (96), Expect = 2e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
|||||| ||||| || || | ||||| | ||| || || || ||||| || ||||| ||
Sbjct 10560 ATCCTCAAGCTGCTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTT 10501
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | |||||| ||||| || | ||| ||||| | | || || || | || ||
Sbjct 10500 GTCCTGAATTTTAGCCTTCACATTGTCGATTGTGTCTGAGCTCTCAACTTCCAAGGTAAT 10441
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || ||||| ||||||||||| |||||
Sbjct 10440 AGTCTTGCCTGTCAGAGTCTTCACAAAGATTTGCAT 10405
>seq1703
Length=21771
Score = 118 bits (130), Expect = 9e-22
Identities = 149/205 (73%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 94805 TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGT 94864
|||| ||| || ||||| || | |||||||| | ||| | |||||||| |||
Sbjct 18620 TGCAGAGTCGACTCCTTCTGTATATTATAATCAGCAAGAGTCCTCCCATCCTCCAACTGC 18679
Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924
||||| ||||||| | || |||||||| ||||| || ||||| || || | || ||
Sbjct 18680 TTTCCCGCAAAGATCAGCCTCTGCTGATCCGGAGGGATCCCTTCCTTATCTTGTATCTTA 18739
Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984
||||||||| | ||| || |||| | || || || | ||||| || ||||| |||
Sbjct 18740 GCCTTGACGTTGTCGATTGTATCAGAGCTCTCCACCTCCAAAGTGATAGTCTTTCCGGTA 18799
Query 94985 AGAGTTTTCACAAAGATCTGCATGC 95009
||||| || || |||||||||||||
Sbjct 18800 AGAGTCTTGACGAAGATCTGCATGC 18824
Score = 114 bits (126), Expect = 1e-20
Identities = 152/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||||||| | ||| || ||||| || | || || || || ||| ||||||
Sbjct 17930 ACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAGTCTGCCAAGGTGCGACCATCCTCG 17989
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
||||| ||||| | ||||| | | |||||||| ||||| |||||||| ||||| |
Sbjct 17990 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGGATACCTTCCTTGTCCTGG 18049
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || ||||| ||| | | | |||||||| | || || || | ||||| || ||
Sbjct 18050 ATCTTAGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCAACCTCCAATGTGATAGTCTTC 18109
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| |||||||| || ||||||||||||||||
Sbjct 18110 CCGGTAAGAGTCTTGACAAAGATCTGCATGC 18140
Score = 113 bits (124), Expect = 4e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
||||| |||||||| | ||||| ||||| || | || |||||| || ||| |
Sbjct 18836 CGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATATTGTAATCGGCCAAGGTGCGACCA 18895
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||| ||||| |||||| | ||||| | | |||||||| ||||| || ||||| |||
Sbjct 18896 TCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGGATCCCTTCCTTG 18955
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || || || ||| | ||| ||||| | | || || || | |||||
Sbjct 18956 TCCTGGATCTTGGCTTTCACGTTGTCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGATT 19015
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || ||||||||||| ||||| |||||
Sbjct 19016 GTCTTCCCGGTGAGAGTTTTCACGAAGATTTGCAT 19050
Score = 109 bits (120), Expect = 5e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
||||| |||||||| | |||||||| || || | ||| || || | ||| | |
Sbjct 18380 CGCAAGACCAAGTGAAGCGTAGATTCTTTCTGGATGTTGTAGTCAGCAAGAGTCCTCCCA 18439
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||||| ||| || ||| ||||||| || || ||||| || || || || ||||| ||
Sbjct 18440 TCCTCCAACTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGTGGGATCCCTTCCTTA 18499
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | ||| || |||||||| | | | ||| || | | || || || | || ||
Sbjct 18500 TCCTGAATCTTAGCCTTGACATTGTCAATAGTATCGGAGCTCTCCACCTCCAAAGTAATA 18559
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| |||||||| | ||| || ||||||||||||||
Sbjct 18560 GTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 18594
Score = 86.0 bits (94), Expect = 6e-12
Identities = 149/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|| ||||||||||| | || || || || || | ||| ||||| || ||| |
Sbjct 18152 CGTAACACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAATCAGCCAAGGTGCGACCA 18211
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||| ||||| || || | || || | || ||||| || ||||| ||||| ||||||
Sbjct 18212 TCCTCGAGCTGCTTCCCAGCGAATATCAGCCTCTGCTGGTCCGGAGGGATACCCTCTTTG 18271
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | ||||| || || ||| | | | ||||| | || || || | |||||
Sbjct 18272 TCTTGGATTTTCGCTTTCACGTTGTCAATGGTGTCGGAACTCTCCACCTCTAAAGTGATC 18331
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| ||||| || | || || || |||||||||||||
Sbjct 18332 GTCTTTCCTGTCAACGTCTTAACGAAGATCTGCATGC 18368
>seq4396
Length=13502
Score = 113 bits (124), Expect = 4e-20
Identities = 166/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832
||| || |||||| | || |||||||||||||| | ||||| ||||| || | |||||
Sbjct 336 TTTGCATTCCTCCACGCAGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGGATGTTAT 277
Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892
| || || ||| |||||| ||||| || || | ||||| | | ||||| |
Sbjct 276 AGTCAGCCAAGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGT 217
Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952
| || || || || || ||||| | ||| || ||||||||| | | | ||||| | |
Sbjct 216 CCGGTGGGATTCCCTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCAATGGTGTCGGAGC 157
Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || | ||||| || ||||| || || || || ||||||||||||||
Sbjct 156 TCTCAACTTCGAGGGTGATTGTCTTTCCGGTTAGTGTCTTGACAAAGATCTGCAT 102
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|| ||||||||||| | || || || || || | ||| ||||| || ||| |
Sbjct 12705 CGTAACACCAAGTGAAGGGTTGACTCTTTCTGAATGTTGTAATCAGCCAAGGTGCGACCA 12646
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||| ||||| || || | ||||| | | ||||| || || || || || || |||
Sbjct 12645 TCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATCCCCTCCTTG 12586
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | ||| || ||||||||| | | | ||||| | | || || || | |||||
Sbjct 12585 TCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAAAGTGATA 12526
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || || || || ||||| ||||||||
Sbjct 12525 GTCTTCCCGGTCAGTGTCTTAACAAAAATCTGCAT 12491
>seq37186
Length=985
Score = 105 bits (116), Expect = 6e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 94805 TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGT 94864
|||||||| || |||||||| | ||| || || | ||| || |||| |||||
Sbjct 235 TGCAAAGTTGACTCCTTTTGGATGTTGTAGTCAGCGAGAGTCCTGCCGACCTCGAGCTGC 294
Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924
|| ||| ||||||| || || ||||| || || || || || || ||||| | ||| ||
Sbjct 295 TTGCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGAATCTTA 354
Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984
|||||||| ||| ||||| | | || || || | |||||||| ||||| |||
Sbjct 355 GCCTTGACATTATCGATGGTGTCCGAGCTCTCCACCTCGAGAGTGATGGTCTTTCCGGTA 414
Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007
|| || || || |||||||||||
Sbjct 415 AGGGTCTTGACGAAGATCTGCAT 437
>seq25552
Length=2169
Score = 105 bits (116), Expect = 6e-18
Identities = 117/156 (75%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| || |||||||| ||| | ||||| | | |||||||| ||||| |||||||||||
Sbjct 400 ATCTTCGAGCTGTTTACCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATACCTTCTTT 341
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | || || || ||||| | ||| ||||| | | ||||| || | |||||
Sbjct 340 GTCTTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAGGACTCGACTTCGAGAGTGAT 281
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| || || || || |||||||| |||||||||||
Sbjct 280 GGTCTTGCCCGTTAGGGTTTTCACGAAGATCTGCAT 245
>seq1045
Length=26565
Score = 102 bits (112), Expect = 7e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863
||| | |||||| ||||| || | ||| || ||| | ||| ||||| |||||
Sbjct 2815 GTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTG 2874
Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923
||| ||| | ||||| | | ||||| || ||||| || ||||| ||||| | || ||
Sbjct 2875 TTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTT 2934
Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983
||||||||| | ||| ||||| | | ||||| || | ||||| || || || ||
Sbjct 2935 GGCCTTGACGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTCTTCCCCGT 2994
Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007
|| |||||||| |||||||||||
Sbjct 2995 TAGGGTTTTCACGAAGATCTGCAT 3018
>seq14782
Length=4961
Score = 98.7 bits (108), Expect = 9e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838
|||||||||||| || | |||| ||| | ||| || ||||| || | ||| |||||
Sbjct 1967 CTCCTCCTCTCAGACGGAGAACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCCG 2026
Query 94839 TCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898
| || | || |||||||| || ||| | ||||| | | ||||| || || |
Sbjct 2027 CGAGGGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTG 2086
Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958
| || ||||| ||||| | ||| || |||||||| | ||| ||||| | ||||
Sbjct 2087 GGATCCCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCGGATGATTCGA 2146
Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| || | || || || || || || || |||||||| |||||||||||
Sbjct 2147 CCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 2195
>seq12662
Length=5898
Score = 93.3 bits (102), Expect = 4e-14
Identities = 153/217 (71%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851
|||||||||||||| | || || ||||| || | ||| || ||| || || || ||
Sbjct 3931 CGCAACACCAAGTGAATGGTTGACTCCTTCTGGATGTTGTAGTCGG-CA-AGGGTGCGAC 3874
Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910
|||||| ||||| ||||| | ||||| | | ||||| |||||||| || ||||| |
Sbjct 3873 CATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCT 3814
Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970
| || | || || || || ||| | | ||||| | | || || || | ||||
Sbjct 3813 TATCTTGGATCTTGGCTTTCACGTTATCAATCGTGTCCGAGCTCTCAACTTCGAGGGTGA 3754
Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| || ||||| | || ||||| |||||||||||
Sbjct 3753 TGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 3717
>seq24793
Length=2311
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 94805 TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGT 94864
|||| |||||| ||||| || | ||| || || || || || || || |||||
Sbjct 1411 TGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAATGTTCTGCCGTCTTCAAGCTGC 1470
Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924
|| ||| | ||||| || || ||||| || ||||| ||||| || ||||| | || |||
Sbjct 1471 TTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCTTGGATCTTT 1530
Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984
|| |||||| | ||| ||||| | | || || || | || || || ||||| ||
Sbjct 1531 GCTTTGACGTTGTCGATGGTGTCGGAGCTCTCCACCTCTAGGGTAATCGTCTTTCCCGTC 1590
Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007
| || || || |||||||||||
Sbjct 1591 AAGGTCTTAACGAAGATCTGCAT 1613
Score = 87.8 bits (96), Expect = 2e-12
Identities = 152/218 (70%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGA 94851
||||| |||||||| | ||||| ||||| || | || || || || || || ||
Sbjct 1171 CGCAAGACCAAGTGAAGTGTAGACTCCTTCTGGATATTGTAGTCAGCG---AGAGTCCGA 1227
Query 94852 --ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCT 94909
|||||| ||||| ||||| | ||||| | | ||||| |||||||| || |||||
Sbjct 1228 CCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATCCCTTCC 1287
Query 94910 TTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTG 94969
|| || | || || || || ||| | | ||||| | | || || || | |||
Sbjct 1288 TTATCTTGGATCTTGGCTTTCACGTTATCAATCGTGTCCGAGCTCTCAACTTCGAGGGTG 1347
Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || ||||| | || |||||||||||||||||
Sbjct 1348 ATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 1385
>seq11485
Length=6519
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCC 94869
||| || ||||| || | ||| |||||| || ||| || || ||||| || ||
Sbjct 4675 AGTTGACTCCTTCTGGATGTTGTAATCGGCCAGGGTGCGTCCGTCTTCTAGCTGCTTCCC 4616
Query 94870 GCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTT 94929
| ||||| | || ||||| || ||||| || ||||| ||||| | || ||||||||
Sbjct 4615 AGCGAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTTGCCTT 4556
Query 94930 GACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989
||| | | | |||||| | | ||||| || | |||||||| || || || || ||
Sbjct 4555 GACATTGTCTATAGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGTGT 4496
Query 94990 TTTCACAAAGATCTGCAT 95007
|||||| || || |||||
Sbjct 4495 TTTCACGAAAATTTGCAT 4478
>seq3667
Length=14967
Score = 89.7 bits (98), Expect = 5e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863
||| | |||||| ||||| || | ||| || ||| | ||| ||||| |||||
Sbjct 5518 GTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTG 5577
Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923
||| ||| | ||||| | | ||||| || ||||| || ||||| ||||| | || ||
Sbjct 5578 TTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTT 5637
Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983
|| ||||| | ||| ||||| | ||||| || | ||||| || || || ||
Sbjct 5638 GGCTTTGACATTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATCGTCTTCCCCGT 5697
Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007
|| |||||||| |||||||||||
Sbjct 5698 TAGGGTTTTCACGAAGATCTGCAT 5721
>seq806
Length=29032
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
|| || ||||| || ||| | ||||| | || ||||| || || || || ||||| |||
Sbjct 18022 TCTTCGAGCTGCTTCCCGGCGAAGATCAGTCGCTGCTGGTCCGGCGGGATCCCTTCCTTG 18081
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || ||||||||| | ||| ||||| | | ||||| || | || ||
Sbjct 18082 TCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTTATC 18141
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || || |||||||| |||||||||||
Sbjct 18142 GTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 18176
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447928465175520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |