Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_006820.1
Length=196280
Score E
Sequences producing significant alignments: (Bits) Value
seq6139 574 6e-159
seq43812 358 8e-94
seq18917 269 3e-67
seq12239 143 3e-29
seq293 84.2 3e-11
>seq6139
Length=10899
Score = 574 bits (636), Expect = 6e-159
Identities = 739/1012 (73%), Gaps = 18/1012 (2%)
Strand=Plus/Plus
Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934
||||||||||| | | || ||||| || ||||| ||||||||||| ||| | || |
Sbjct 5086 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 5145
Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994
|||| ||| ||||| || | || || ||| | || || ||||| ||||| || |
Sbjct 5146 TTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 5205
Query 137995 GGTACACCCACGGGTTGGCGTCTAGTT---ATCTTGAAGGCGCTAATTTCCTCACAGCAG 138051
|||| || || || ||||| ||||| || | ||||| ||||| | || || |
Sbjct 5206 GGTATACTCATGGATTGGC---TAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTG 5262
Query 138052 CTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGT 138111
| ||||| ||||||||| || | | | |||||| | | |||| |||||||||||
Sbjct 5263 CAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAG 5322
Query 138112 CTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCC 138171
| ||||||||| | || |||| ||| | || || || ||| ||||||| || ||||
Sbjct 5323 CACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCC 5382
Query 138172 ACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTA 138230
|||| || || | || || || ||| | || || ||||| | |||| |||| |
Sbjct 5383 ACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTT- 5441
Query 138231 GGCA--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCG 138288
|| | || || || || |||||||||||||||||||| || ||||| || || |
Sbjct 5442 --CAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTG 5499
Query 138289 TGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGG 138348
| || || || ||||| | |||||||| ||||||||||||| || |||||||| |
Sbjct 5500 TCTTTCTAATTTATCCACTAGGTCAATCGGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAG 5559
Query 138349 CAGCAATCTTCCGAT---TCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACC 138405
| || || || |||| |||| || |||| ||||||| ||||| ||||| | ||||
Sbjct 5560 CGGCTATATTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACC 5616
Query 138406 CCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATG 138465
| |||||||||||||| || || ||| | || || | |||||| | || ||||||||||
Sbjct 5617 CATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATG 5676
Query 138466 GTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCAT 138525
||||||| |||||||||||||| | ||||||||| || ||||||| || || |
Sbjct 5677 GTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTT 5736
Query 138526 TTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGC 138585
|| | || ||||||| |||||||| ||||||||||| || |||||||| | ||||| |
Sbjct 5737 TTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCAC 5796
Query 138586 AAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTC 138645
|||||||||| |||||||| ||||| |||||| | || ||||||||| | ||||| |
Sbjct 5797 AAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTAC 5856
Query 138646 CCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAG 138705
| || | ||| | |||| ||| | |||| | | ||||| ||| | |||||||| |
Sbjct 5857 CAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTG 5916
Query 138706 CGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCT 138765
| ||||| ||||| || || ||||| |||||||| |||||||| ||||| ||||| ||||
Sbjct 5917 CCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCT 5976
Query 138766 ACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAAC 138825
| || || || |||||| | || |||||| | || || |||||||| || ||||| |
Sbjct 5977 ATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGC 6036
Query 138826 CTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877
|||| |||||| || | || ||||| || || | ||| | || ||||||||
Sbjct 6037 CTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 6088
>seq43812
Length=736
Score = 358 bits (396), Expect = 8e-94
Identities = 401/536 (75%), Gaps = 0/536 (0%)
Strand=Plus/Plus
Query 135792 CTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCA 135851
|||||||| || ||||||| |||| ||||| ||| |||||||||||| || || |
Sbjct 1 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 60
Query 135852 TTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATC 135911
| ||||| ||||| |||| ||| |||| |||||||| || ||||||||||| ||||| |
Sbjct 61 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 120
Query 135912 CTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATG 135971
| || |||||||| || || ||||| || ||||| || || || || |||||||||||
Sbjct 121 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 180
Query 135972 GATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATG 136031
| ||| | || || |||||| | | | || || || || ||||| || | |
Sbjct 181 GTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 240
Query 136032 GTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCG 136091
| |||| ||||||||||||||||| |||||||||||||| |||||||| ||||| || |
Sbjct 241 GGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 300
Query 136092 GTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTG 136151
| || |||||||||||||||| |||||||| |||||||| |||| || ||| | |
Sbjct 301 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 360
Query 136152 CTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTCA 136211
| |||||||| || || ||||| |||||| |||| | || | ||| ||||| ||||
Sbjct 361 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 420
Query 136212 ACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAACA 136271
|||| ||||| ||||| |||||||| || | || | | |||| ||||| | || |
Sbjct 421 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 480
Query 136272 CCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327
| ||||| ||| | | || |||||| || |||||||| || ||||| || |||
Sbjct 481 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 536
>seq18917
Length=3610
Score = 269 bits (298), Expect = 3e-67
Identities = 315/421 (75%), Gaps = 6/421 (1%)
Strand=Plus/Plus
Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433
||||| | ||| | || || ||||| ||||| || || | || |||||||| ||
Sbjct 3193 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3252
Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGCTTTATTGTTGCTTTCATCGCTGCACC 135492
||||||||||| ||| | | | || || | |||||| | || ||||| ||||| ||
Sbjct 3253 ATGATTCCTAC-CTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 3311
Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552
||| || |||||||| || || || ||||||||| |||| ||||| | |||||||| ||
Sbjct 3312 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 3371
Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCTA--GCAACGCCATCGGCCTTCACTTCTATCCC 135610
|| || || ||||| |||| ||| || ||| || || || | || || |||||
Sbjct 3372 TATTATTTCAGGTGCCATTATTCCTACTTCTGCA--GCTATTGGTTTGCATTTTTATCCG 3429
Query 135611 ATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTG 135670
|||||||||||||| || ||||||| |||||||| || |||||||||||| ||||| |
Sbjct 3430 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATT 3489
Query 135671 GTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTAC 135730
|| | ||||| | | ||||| | ||| |||||||| ||||||||||| || |
Sbjct 3490 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 3549
Query 135731 CGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACT 135790
|| ||||||||||| ||||||||| ||| || || ||||| |||||||| |||||||||
Sbjct 3550 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 3609
Query 135791 G 135791
|
Sbjct 3610 G 3610
>seq12239
Length=6102
Score = 143 bits (158), Expect = 3e-29
Identities = 370/554 (67%), Gaps = 20/554 (4%)
Strand=Plus/Minus
Query 137877 GATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTTTT 137936
||||||||| | | || ||||| || ||||| ||||||||||| ||| | || |||
Sbjct 611 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 552
Query 137937 CCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCTGG 137996
|| ||| ||||| || | || || ||| | || || ||||| ||||| || |||
Sbjct 551 CCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 492
Query 137997 TACACCCACGGGTTGGCGTCTAGT---TATCTTGAAGGCGCTAATTTCCTCACAGCAGCT 138053
|| | || || |||| ||||| ||| | ||||| | | | | || | ||
Sbjct 491 TATATTCATGGATTGG---CTAGTTTCTATTTAGAAGGTTGCAGTCTTTTAACCGATGCA 435
Query 138054 GTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 138113
||||| ||||||||| || | | | |||||| | | |||| | ||||| ||| |
Sbjct 434 GTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTGT-GGGTCATGAAGCA 376
Query 138114 CAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCAC 138173
||||||||| | || |||| ||| | || || ||| |||||| | ||||||
Sbjct 375 CAAGGAGATTTTAGTCGTTGGTGTCAATTAAACGGCCTGTGGGTTTTTGTTTCTCTCCAC 316
Query 138174 GGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTAGG 138232
| || || | || || || ||| | || || ||||| | |||| |||| |
Sbjct 315 AGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTT--- 259
Query 138233 CA--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTG 138290
|| | | || || || |||||||||||||||||||| || |||| || | |
Sbjct 258 CAATTGTGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGGTTTTATTCCTGCC 199
Query 138291 TTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCA 138350
|| || || ||||| | |||||||| ||||||||||||| || |||||||| ||
Sbjct 198 TTTCTAATTTATCC-TCAGGTCAATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCG 140
Query 138351 GCAATCTTCCGAT---TCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCC 138407
| || || || | |||| || |||| || |||| |||| ||||| | ||||
Sbjct 139 GTTATATTTCGGTTCATCCTCTTTTTCC--AAGAGTTT-TATAATTGGACATTGAACCAT 83
Query 138408 TTTCATATGATGGG 138421
| |||||||||||
Sbjct 82 CTACATATGATGGG 69
>seq293
Length=39549
Score = 84.2 bits (92), Expect = 3e-11
Identities = 132/186 (71%), Gaps = 6/186 (3%)
Strand=Plus/Plus
Query 135467 TTTATTGTTGCTTTCATCGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTT 135526
|||||| | || ||||| ||||| ||| || ||||||| || || | |||||| ||
Sbjct 26001 TTTATTATCGCATTCATTGCTGCTCCTTTAGTAGATATTGGTGGTATTTGTGAACCTATT 26060
Query 135527 GCTGGTTCTCTAATGTACGGAAATAACATCATCTCTGGTGCTGTTATCC---CTTCTAGC 135583
|| | | ||| | || ||||| | || || || ||||| |||| | |||||| |
Sbjct 26061 TCTCGATATCTTCTTTATGGAAACGATATTATTTCAGGTGCCATTATTCATACTTCTA-C 26119
Query 135584 AACGCCATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTA 135643
| || || || | || || ||| | |||||||||||||| | | ||| ||| ||||||
Sbjct 26120 A--GCTATTGGTTTGCATTTTTATTCAATCTGGGAAGCTGCATTTGTTGGTGAATGGCTA 26177
Query 135644 TATAAT 135649
|| |||
Sbjct 26178 TACAAT 26183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627459879692800
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