Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq43812 403 5e-108 seq18917 192 2e-44 seq49459 89.7 1e-13 >seq43812 Length=736 Score = 403 bits (446), Expect = 5e-108 Identities = 440/579 (76%), Gaps = 4/579 (1%) Strand=Plus/Plus Query 19708 CTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGT 19766 |||| ||||| | | |||||| |||| ||||| |||||| ||||||||||||||| || Sbjct 1 CTGT-TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 59 Query 19767 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCAT 19826 |||||||||||||| ||||||||| | |||||||| || || ||||| || |||||||| Sbjct 60 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 119 Query 19827 CCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCAC 19886 || || |||||| | ||||| ||||| |||||||| || || || || ||||||||| Sbjct 120 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 179 Query 19887 GGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTAT 19946 || |||||| ||||| | |||| |||||| || || ||| ||| || | Sbjct 180 GGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 239 Query 19947 GGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTT 20006 || || | ||||| ||||| ||||| || || || ||||| ||||| ||||| || ||| Sbjct 240 GGGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTT 299 Query 20007 GGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTT 20066 || ||||||| || ||||||||| |||||| ||||||||||||||||||||||| | Sbjct 300 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 359 Query 20067 GCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTC 20126 || ||| || || || || || ||| |||| | | || || | |||||||||||| Sbjct 360 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTC 419 Query 20127 AACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCC 20185 ||||| |||||||| || || ||||| |||||||||||| ||||| ||| | || Sbjct 420 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAA-GGACGTGTTATTAA 478 Query 20186 AACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAA 20245 || ||||||||| | | || | |||||||| || | ||||||||||| || || || Sbjct 479 TACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 538 Query 20246 TGCTCATAACTTCCCACTTGATTTAGCTTCGGCTGAGTC 20284 |||||| |||||||| || || ||||| | | |||||| Sbjct 539 TGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 577 >seq18917 Length=3610 Score = 192 bits (212), Expect = 2e-44 Identities = 291/414 (70%), Gaps = 0/414 (0%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || |||||||| ||||| ||||| | || |||||||| || | Sbjct 3193 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3252 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||||||| |||| | | || ||| | ||||| |||| || || || || || Sbjct 3253 ATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 3312 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || | | |||||||||||| Sbjct 3313 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 3372 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 |||||||| || || | |||| | || || || || |||| |||||||||||| Sbjct 3373 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATC 3432 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | | | ||||| ||| |||||||||| ||||| ||| |||| |||| Sbjct 3433 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 3492 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649 | ||||| ||| | || ||||| || ||| | |||||||||| || | | Sbjct 3493 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 3552 Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCT 19703 | || ||| | || ||||| || |||||| |||| || | |||| ||| Sbjct 3553 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCT 3606 >seq49459 Length=611 Score = 89.7 bits (98), Expect = 1e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19740 AGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTC 19799 |||||| ||||||||||||||| || |||||||||||||| ||||||||| | |||||| Sbjct 486 AGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTC 545 Query 19800 CAAGCAGAACACAATAT 19816 || || || ||||| || Sbjct 546 CAGGCTGAGCACAACAT 562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144330568825392