Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_006883.2
Length=252401
Score E
Sequences producing significant alignments: (Bits) Value
seq43812 333 4e-86
seq18917 178 2e-39
>seq43812
Length=736
Score = 333 bits (368), Expect = 4e-86
Identities = 415/566 (73%), Gaps = 2/566 (0%)
Strand=Plus/Plus
Query 211988 CTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTA 212047
|||| ||| | | |||||| | ||||| || || || || ||||||||| |||| |
Sbjct 1 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 60
Query 212048 TATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACC 212107
| || || || |||||||| ||| | |||||||| || || || ||||| ||||||||||
Sbjct 61 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 120
Query 212108 CATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACG 212167
|||| || ||| |||||| || ||| | ||||| || | |||| ||||||||| |
Sbjct 121 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 180
Query 212168 GTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATG 212227
||||| | || || ||| | ||| | |||||||| | || || || | |
Sbjct 181 GTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 240
Query 212228 GTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCG 212287
| |||| ||||| ||||||||||| || || ||||| || ||||| || || || || |
Sbjct 241 GGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 300
Query 212288 GTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCG 212347
| || | |||||||| ||||| |||||||| | |||||| |||||| | |
Sbjct 301 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 360
Query 212348 CATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCA 212407
| | ||||| || | || | ||||| || || | ||||| | || ||||| ||||
Sbjct 361 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 420
Query 212408 ACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAG-GTTGTTCCT 212466
|||||||||| ||||| |||||||||||||| |||||| ||| | | | ||| || |
Sbjct 421 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGAT-AGTCAAGGACGTGTTATTAAT 479
Query 212467 ACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAAT 212526
||||||| |||| || ||||| | || ||||||||||||||||||||||| ||| | |||
Sbjct 480 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 539
Query 212527 GCACACAACTTCCCACTTGACTTAGC 212552
|| ||||||||||| || ||| ||||
Sbjct 540 GCTCACAACTTCCCTCTAGACCTAGC 565
>seq18917
Length=3610
Score = 178 bits (196), Expect = 2e-39
Identities = 266/375 (71%), Gaps = 2/375 (1%)
Strand=Plus/Plus
Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668
|||| |||||||||||| | ||||| || | ||| | | | ||||| | |||||
Sbjct 3233 TTGGATGGTTTGGTGTTTTGATGATTCC-TACCTTATTGACCGCAACTTCCGTTTTTATT 3291
Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728
| |||||||| || || ||||| || ||||| || || || |||||||| || ||||
Sbjct 3292 ATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 3351
Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788
|| | | || || ||||| || || || ||||| || |||| |||| || ||
Sbjct 3352 TCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATT 3411
Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848
||||| || || ||||| ||||||||||| ||| | ||||||| ||||| ||||| |||
Sbjct 3412 GGTTTGCATTTTTATCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGT 3471
Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908
|||||||| | | | | | ||||| | | || | | || ||||| |
Sbjct 3472 GGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGT 3531
Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968
||||||||||| | |||| | ||||||||||||||||| |||||| ||||||||
Sbjct 3532 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 3591
Query 211969 CCTGTATCAGCAGCT 211983
||||| |||| |||
Sbjct 3592 CCTGTTGCAGCTGCT 3606
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 806901766709920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |