Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq6139 383 2e-101 seq43812 379 2e-100 seq18917 165 9e-36 seq12239 152 6e-32 seq49459 82.4 9e-11 >seq6139 Length=10899 Score = 383 bits (424), Expect = 2e-101 Identities = 714/1049 (68%), Gaps = 21/1049 (2%) Strand=Plus/Plus Query 171784 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 171843 ||| ||| | ||||| || | ||||| |||||| ||| || || ||||| || | | Sbjct 5065 AAAAAGATTTATTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAG 5124 Query 171844 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 171903 | ||||||||||| || || || |||||||| || | || | || ||||||||| || Sbjct 5125 GTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAG 5184 Query 171904 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 171963 | || || || || || |||||||| || ||||| | || || ||| | || || Sbjct 5185 GTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTT 5244 Query 171964 CAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 172023 || |||||||| || ||||| || || |||| | || | | | ||| | | |||| Sbjct 5245 GCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGT 5304 Query 172024 TCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 172083 | || ||||| ||||| |||||||||||| || || |||| ||||||||| || || | Sbjct 5305 TACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGT 5364 Query 172084 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTG 172143 || ||||| || | || || | || | | | |||||||| ||| | | || |||| Sbjct 5365 GGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTG 5424 Query 172144 AGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTG 172203 | |||| || |||| | || ||||| || ||| | |||||||| | |||| Sbjct 5425 AACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTG 5484 Query 172204 CAGTATTCACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCAC 172263 | || || |||||||||| |||||| ||||||| |||||||||| || | Sbjct 5485 CTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCGGGTTGGTTCTTTGCGC 5544 Query 172264 CTTCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATA 172323 || |||||||| || || || ||||| | || | || | || || || || ||| Sbjct 5545 CTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATT 5604 Query 172324 TAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTAT 172383 || | || ||||||||||||||||| || || ||| |||| || | || | ||| Sbjct 5605 GGACATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTAT 5664 Query 172384 GTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTG 172443 | || || |||||||| || ||| | || || || | |||||| || Sbjct 5665 GCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGA---------------TG 5709 Query 172444 AAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTT 172503 | | | | ||| |||| ||| | || || | || || || | |||||||||| Sbjct 5710 --GTGATGGTGCAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTT 5763 Query 172504 ATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACA 172563 || ||| | || |||||| | || |||||||| || ||||| | || ||||| || | Sbjct 5764 ATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATA 5823 Query 172564 AAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTA 172623 || | | ||||| ||| ||||||| || ||||| || | ||| | |||| || Sbjct 5824 AACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTC 5883 Query 172624 TAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAA 172683 | || | || ||||| || | ||||| | || || ||||| || || || || || Sbjct 5884 TTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCC 5943 Query 172684 GAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAG 172743 | ||||| ||||| || || ||||| || ||||| ||||| || |||||| | || |||| Sbjct 5944 GTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAG 6003 Query 172744 GTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAG 172803 |||| | || |||||| | || ||||| || ||||| ||| || | ||||| || | Sbjct 6004 GTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 6063 Query 172804 AAGTCTTGCCACGAGGCAACGCACTATAA 172832 | || | ||||| || ||||| || ||| Sbjct 6064 AGGTTCTACCACGTGGAAACGCTCTTTAA 6092 >seq43812 Length=736 Score = 379 bits (420), Expect = 2e-100 Identities = 431/577 (75%), Gaps = 1/577 (0%) Strand=Plus/Plus Query 171089 TTCCTTG-TGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTC 171147 || |||| | || ||| | ||||| || || |||||||||||||| ||||| ||||| Sbjct 5 TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTC 64 Query 171148 AGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTT 171207 ||||| |||||||| ||| | || ||||| || || |||||||| || |||||||| || Sbjct 65 TGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATT 124 Query 171208 CCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTC 171267 || ||| ||||||||| ||| | ||||| || || || ||||| ||||| ||||| Sbjct 125 TCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC 184 Query 171268 TCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTA 171327 | | || || ||| | | ||||| || || || || || || | || | || || Sbjct 185 TTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGGTA 244 Query 171328 TAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAG 171387 | ||||| |||||||||||||| || |||||||| |||||||| || || || || | Sbjct 245 CAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCG 304 Query 171388 ATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGT 171447 ||| |||||||| ||||| |||||||| |||||||| ||||| |||||| | || | Sbjct 305 ATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGC 364 Query 171448 ATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCT 171507 | || ||||| || | ||||| || || | ||||| |||| ||||| |||||||| Sbjct 365 TTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCT 424 Query 171508 TAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACATG 171567 || || ||||| |||||||||||||| || ||| | ||| || | || || Sbjct 425 AAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTG 484 Query 171568 GGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACA 171627 || ||| || ||||| | || |||||||| |||||||||||||||||| | ||||| || Sbjct 485 GGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 544 Query 171628 CAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACA 171664 ||||||||| ||||||||||| ||| ||||||| || Sbjct 545 CAACTTCCCTCTAGACCTAGCTGCTGTTGAGTCTCCA 581 >seq18917 Length=3610 Score = 165 bits (182), Expect = 9e-36 Identities = 289/415 (70%), Gaps = 7/415 (2%) Strand=Plus/Plus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||| | ||| |||| || || || || | ||| |||| ||||||||||| || Sbjct 3193 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3252 Query 170726 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 170784 ||||| || | ||| | || || || | ||| ||| | |||||||| |||||||| Sbjct 3253 ATGATTCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 3311 Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACA 170843 |||||| ||||| || || || | ||||| ||| | || ||| ||||| || || |||| Sbjct 3312 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTT-TACGGAAACA 3370 Query 170844 ACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCA 170903 | || || || ||||| | |||| |||| || || || || || || ||||| | Sbjct 3371 ATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGA 3430 Query 170904 TCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTA 170963 |||||||||| || | | || || ||| | |||||||| |||||||| | || || Sbjct 3431 TCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTG 3490 Query 170964 TTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACA 171023 || | ||||| | |||| | || || |||||| | |||||||||| | | Sbjct 3491 TTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 3550 Query 171024 GACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGC 171078 | || || ||| | |||||||| ||| ||||| ||||| ||||| |||||| Sbjct 3551 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGT---TGCAGC 3602 >seq12239 Length=6102 Score = 152 bits (168), Expect = 6e-32 Identities = 338/500 (68%), Gaps = 8/500 (2%) Strand=Plus/Minus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || ||||||| |||||| ||| || || ||||| || | || ||||||||| Sbjct 623 TTTGATATTATTGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 564 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 || || || || |||||||| || | || | || ||||||||| ||| || || || Sbjct 563 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 504 Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTG-AGGGAGCAAACTTTTT 171973 || || |||||||| | ||||| | || | ||| | | ||| ||| | |||| Sbjct 503 GTAACTTCATGGTATATTCATGGATTGGCTAGTTTCTATTTAGAAGGTTGCAGTC-TTTT 445 Query 171974 AACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGG 172033 ||| | ||||| || || |||| | || | | | ||| | | || || || | ||| Sbjct 444 AACCGATGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTGT-GGG 386 Query 172034 ACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGT 172093 | ||| |||||||||||| || || |||| ||||||| || || ||| ||||| Sbjct 385 TCATGAAGCACAAGGAGATTTTAGTCGTTGGTGTCAATTAAACGGCCTGTGGGTTTTTGT 326 Query 172094 AGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGG 172153 | | || | | || | | | |||||||| ||| | | || ||||| |||| | Sbjct 325 TTCTCTCCACAGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 266 Query 172154 ACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCA- 172212 | |||| | | ||||| || ||| | |||||||| | ||||| | || | Sbjct 265 ATCTGTTCAATTGTGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGGTTTTAT 206 Query 172213 -CGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTT 172271 | || ||||||||| ||||| | |||||| | |||||||||| |||||| ||| Sbjct 205 TCCTGC--CTTTCTAATTTATCC-TCAGGTCAATCTGGTTGGTTCTTTGCACCTAGTTTT 149 Query 172272 GGTGTCGCAGCAATCTTTCG 172291 ||||| || | || ||||| Sbjct 148 GGTGTAGCGGTTATATTTCG 129 >seq49459 Length=611 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 171119 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 171178 || |||||||||||||| ||||| ||||| ||||| |||||||| ||| | || ||||| Sbjct 489 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAG 548 Query 171179 GCAGAACACAACATA 171193 || || ||||||||| Sbjct 549 GCTGAGCACAACATA 563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569807367000480