Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_006884.2
Length=178249
Score E
Sequences producing significant alignments: (Bits) Value
seq6139 383 2e-101
seq43812 379 2e-100
seq18917 165 9e-36
seq12239 152 6e-32
seq49459 82.4 9e-11
>seq6139
Length=10899
Score = 383 bits (424), Expect = 2e-101
Identities = 714/1049 (68%), Gaps = 21/1049 (2%)
Strand=Plus/Plus
Query 171784 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 171843
||| ||| | ||||| || | ||||| |||||| ||| || || ||||| || | |
Sbjct 5065 AAAAAGATTTATTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAG 5124
Query 171844 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 171903
| ||||||||||| || || || |||||||| || | || | || ||||||||| ||
Sbjct 5125 GTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAG 5184
Query 171904 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 171963
| || || || || || |||||||| || ||||| | || || ||| | || ||
Sbjct 5185 GTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTT 5244
Query 171964 CAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 172023
|| |||||||| || ||||| || || |||| | || | | | ||| | | ||||
Sbjct 5245 GCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGT 5304
Query 172024 TCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 172083
| || ||||| ||||| |||||||||||| || || |||| ||||||||| || || |
Sbjct 5305 TACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGT 5364
Query 172084 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTG 172143
|| ||||| || | || || | || | | | |||||||| ||| | | || ||||
Sbjct 5365 GGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTG 5424
Query 172144 AGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTG 172203
| |||| || |||| | || ||||| || ||| | |||||||| | ||||
Sbjct 5425 AACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTG 5484
Query 172204 CAGTATTCACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCAC 172263
| || || |||||||||| |||||| ||||||| |||||||||| || |
Sbjct 5485 CTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCGGGTTGGTTCTTTGCGC 5544
Query 172264 CTTCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATA 172323
|| |||||||| || || || ||||| | || | || | || || || || |||
Sbjct 5545 CTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATT 5604
Query 172324 TAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTAT 172383
|| | || ||||||||||||||||| || || ||| |||| || | || | |||
Sbjct 5605 GGACATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTAT 5664
Query 172384 GTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTG 172443
| || || |||||||| || ||| | || || || | |||||| ||
Sbjct 5665 GCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGA---------------TG 5709
Query 172444 AAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTT 172503
| | | | ||| |||| ||| | || || | || || || | ||||||||||
Sbjct 5710 --GTGATGGTGCAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTT 5763
Query 172504 ATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACA 172563
|| ||| | || |||||| | || |||||||| || ||||| | || ||||| || |
Sbjct 5764 ATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATA 5823
Query 172564 AAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTA 172623
|| | | ||||| ||| ||||||| || ||||| || | ||| | |||| ||
Sbjct 5824 AACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTC 5883
Query 172624 TAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAA 172683
| || | || ||||| || | ||||| | || || ||||| || || || || ||
Sbjct 5884 TTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCC 5943
Query 172684 GAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAG 172743
| ||||| ||||| || || ||||| || ||||| ||||| || |||||| | || ||||
Sbjct 5944 GTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAG 6003
Query 172744 GTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAG 172803
|||| | || |||||| | || ||||| || ||||| ||| || | ||||| || |
Sbjct 6004 GTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 6063
Query 172804 AAGTCTTGCCACGAGGCAACGCACTATAA 172832
| || | ||||| || ||||| || |||
Sbjct 6064 AGGTTCTACCACGTGGAAACGCTCTTTAA 6092
>seq43812
Length=736
Score = 379 bits (420), Expect = 2e-100
Identities = 431/577 (75%), Gaps = 1/577 (0%)
Strand=Plus/Plus
Query 171089 TTCCTTG-TGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTC 171147
|| |||| | || ||| | ||||| || || |||||||||||||| ||||| |||||
Sbjct 5 TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTC 64
Query 171148 AGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTT 171207
||||| |||||||| ||| | || ||||| || || |||||||| || |||||||| ||
Sbjct 65 TGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATT 124
Query 171208 CCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTC 171267
|| ||| ||||||||| ||| | ||||| || || || ||||| ||||| |||||
Sbjct 125 TCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC 184
Query 171268 TCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTA 171327
| | || || ||| | | ||||| || || || || || || | || | || ||
Sbjct 185 TTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGGTA 244
Query 171328 TAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAG 171387
| ||||| |||||||||||||| || |||||||| |||||||| || || || || |
Sbjct 245 CAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCG 304
Query 171388 ATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGT 171447
||| |||||||| ||||| |||||||| |||||||| ||||| |||||| | || |
Sbjct 305 ATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGC 364
Query 171448 ATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCT 171507
| || ||||| || | ||||| || || | ||||| |||| ||||| ||||||||
Sbjct 365 TTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCT 424
Query 171508 TAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACATG 171567
|| || ||||| |||||||||||||| || ||| | ||| || | || ||
Sbjct 425 AAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTG 484
Query 171568 GGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACA 171627
|| ||| || ||||| | || |||||||| |||||||||||||||||| | ||||| ||
Sbjct 485 GGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 544
Query 171628 CAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACA 171664
||||||||| ||||||||||| ||| ||||||| ||
Sbjct 545 CAACTTCCCTCTAGACCTAGCTGCTGTTGAGTCTCCA 581
>seq18917
Length=3610
Score = 165 bits (182), Expect = 9e-36
Identities = 289/415 (70%), Gaps = 7/415 (2%)
Strand=Plus/Plus
Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725
|| ||| | ||| |||| || || || || | ||| |||| ||||||||||| ||
Sbjct 3193 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3252
Query 170726 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 170784
||||| || | ||| | || || || | ||| ||| | |||||||| ||||||||
Sbjct 3253 ATGATTCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 3311
Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACA 170843
|||||| ||||| || || || | ||||| ||| | || ||| ||||| || || ||||
Sbjct 3312 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTT-TACGGAAACA 3370
Query 170844 ACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCA 170903
| || || || ||||| | |||| |||| || || || || || || ||||| |
Sbjct 3371 ATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGA 3430
Query 170904 TCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTA 170963
|||||||||| || | | || || ||| | |||||||| |||||||| | || ||
Sbjct 3431 TCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTG 3490
Query 170964 TTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACA 171023
|| | ||||| | |||| | || || |||||| | |||||||||| | |
Sbjct 3491 TTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 3550
Query 171024 GACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGC 171078
| || || ||| | |||||||| ||| ||||| ||||| ||||| ||||||
Sbjct 3551 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGT---TGCAGC 3602
>seq12239
Length=6102
Score = 152 bits (168), Expect = 6e-32
Identities = 338/500 (68%), Gaps = 8/500 (2%)
Strand=Plus/Minus
Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854
||||| || ||||||| |||||| ||| || || ||||| || | || |||||||||
Sbjct 623 TTTGATATTATTGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 564
Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914
|| || || || |||||||| || | || | || ||||||||| ||| || || ||
Sbjct 563 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 504
Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTG-AGGGAGCAAACTTTTT 171973
|| || |||||||| | ||||| | || | ||| | | ||| ||| | ||||
Sbjct 503 GTAACTTCATGGTATATTCATGGATTGGCTAGTTTCTATTTAGAAGGTTGCAGTC-TTTT 445
Query 171974 AACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGG 172033
||| | ||||| || || |||| | || | | | ||| | | || || || | |||
Sbjct 444 AACCGATGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTGT-GGG 386
Query 172034 ACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGT 172093
| ||| |||||||||||| || || |||| ||||||| || || ||| |||||
Sbjct 385 TCATGAAGCACAAGGAGATTTTAGTCGTTGGTGTCAATTAAACGGCCTGTGGGTTTTTGT 326
Query 172094 AGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGG 172153
| | || | | || | | | |||||||| ||| | | || ||||| |||| |
Sbjct 325 TTCTCTCCACAGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 266
Query 172154 ACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCA- 172212
| |||| | | ||||| || ||| | |||||||| | ||||| | || |
Sbjct 265 ATCTGTTCAATTGTGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGGTTTTAT 206
Query 172213 -CGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTT 172271
| || ||||||||| ||||| | |||||| | |||||||||| |||||| |||
Sbjct 205 TCCTGC--CTTTCTAATTTATCC-TCAGGTCAATCTGGTTGGTTCTTTGCACCTAGTTTT 149
Query 172272 GGTGTCGCAGCAATCTTTCG 172291
||||| || | || |||||
Sbjct 148 GGTGTAGCGGTTATATTTCG 129
>seq49459
Length=611
Score = 82.4 bits (90), Expect = 9e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 171119 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 171178
|| |||||||||||||| ||||| ||||| ||||| |||||||| ||| | || |||||
Sbjct 489 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAG 548
Query 171179 GCAGAACACAACATA 171193
|| || |||||||||
Sbjct 549 GCTGAGCACAACATA 563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569807367000480
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