Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq12321 163 4e-35
seq20848 104 3e-17
seq20246 104 3e-17
seq27908 100 4e-16
>seq12321
Length=6064
Score = 163 bits (180), Expect = 4e-35
Identities = 406/606 (67%), Gaps = 8/606 (1%)
Strand=Plus/Minus
Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357
|||| || |||||||||||||| || ||||||||||| || || |||||||| ||
Sbjct 1393 ATCAGGCAGGCGAAATCGCAGTGAAGCCCCTCGTCTCTCGAGATGAGCTCGTTGGAGAAG 1334
Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417
|| || || ||||| || |||||||| || ||||| || || || ||| ||| ||
Sbjct 1333 GTCAGACCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAG 1274
Query 33418 AAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCT-CTCCATAACCGGCGCTGT 33475
|||||||| ||||| || ||| || ||||| | | |||| | | | | | | | |
Sbjct 1273 AAGAAGATCCCTTCGAC-GCAGGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGAT-C 1216
Query 33476 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33535
| | |||||||| ||||| | ||||||||| || || || || || || ||||
Sbjct 1215 CGTCGATCCACTTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGG 1156
Query 33536 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33595
| ||||| | || | || || | ||||| | || || |||| || |||||||
Sbjct 1155 CCCGGAAGAGGTGGTCCCTCTCCTTGTTGTCTTTGATGTAGGTGTCGAGCAGGAGACTAT 1096
Query 33596 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655
|||| || || || ||||| ||||| || ||||| || |||||||| | |||||||
Sbjct 1095 ACATCTCTGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGG 1036
Query 33656 TAATCTGTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTG 33714
| ||| || || | ||| || || || | ||| || || || ||||| |
Sbjct 1035 AGACCTGGACGTC-GGACATGAACCGGGAGGCGAGATTCTCGAGGACGATCCCGTCGGAG 977
Query 33715 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATT 33773
|| || || || |||| || ||||| || || | ||| | | || | || || |
Sbjct 976 GCGGCGAAGAAGGCCAGGACGTGTTTGATGAAGTGGCGCTCGCCGTCGT-TGAGATTCTC 918
Query 33774 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33833
||| || | || || | || ||||| || | ||||| || || || || ||
Sbjct 917 CCAGTCGCGTGTGTCGCCGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGC 858
Query 33834 CTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGG 33893
||| || ||||| | |||||| | |||||||||||||| || ||||| | |||
Sbjct 857 CTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATGCAGAATCTGTCTGG 798
Query 33894 ATTTGG 33899
||||
Sbjct 797 GGTTGG 792
>seq20848
Length=3109
Score = 104 bits (114), Expect = 3e-17
Identities = 146/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430
|||||| || || | ||| | ||| |||| ||| | || | || |||||||| ||||||
Sbjct 2273 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 2332
Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490
|| ||| | ||||| || || || |||||||| | ||||| || || || ||
Sbjct 2333 ATTCGATGTTCCATTTGTGCCACGAATGTAGCTTCCTGTTGCACGGATGTTGTGAACAGA 2392
Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550
| |||||||||||| || |||| || | ||| || ||| || || ||||| ||
Sbjct 2393 AACACCTATTCCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTTTCATATAT 2452
Query 63551 ACCCTCTATGCTATCATCGATCATG 63575
||||| ||||||||||| |||||
Sbjct 2453 TCCCTCAATGCTATCATCCTTCATG 2477
>seq20246
Length=3254
Score = 104 bits (114), Expect = 3e-17
Identities = 146/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430
|||||| || || | ||| | ||| |||| ||| | || | || |||||||| ||||||
Sbjct 2443 TCCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACC 2384
Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490
|| ||| | ||||| || || || |||||||| | ||||| || || || ||
Sbjct 2383 ATTCGATGTTCCATTTGTGCCACGAATGTAGCTTCCTGTTGCACGGATGTTGTGAACAGA 2324
Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550
| |||||||||||| || |||| || | ||| || ||| || || ||||| ||
Sbjct 2323 AACACCTATTCCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTTTCATATAT 2264
Query 63551 ACCCTCTATGCTATCATCGATCATG 63575
||||| ||||||||||| |||||
Sbjct 2263 TCCCTCAATGCTATCATCCTTCATG 2239
>seq27908
Length=1802
Score = 100 bits (110), Expect = 4e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670
|||||| | ||||| | || |||||||| || ||||||||| | ||| | || ||
Sbjct 1026 AGTTCCTGAGTTAAAGAGAGTGGGAGAAGCATGAGTAAACCATCGCTGAGACATTAAATG 1085
Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730
||| || | || || || || || || || ||||| || || | ||| | ||| |
Sbjct 1086 GTAAGTTTGGATTGCAGATTCAATGTCTTCTTTGTGAATCCCAACAGAGACCCTCATGAG 1145
Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790
|||||||||||| |||||||||| ||| | | |||||| | ||| || | || |
Sbjct 1146 CATGTGCTGAGGCCTTTCAACGACTTTGCCATGGACTTTCAAGAGGTATGACCTCTCAAG 1205
Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838
|||||| || ||||| |||| ||| ||| || || || || || ||
Sbjct 1206 AGTTTTGAATCCAAAGTAGTCATATTCAAAATCACGATCATAGATGAT 1253
Score = 95.1 bits (104), Expect = 2e-14
Identities = 154/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430
|||||| || || | || | ||| || | ||| |||| | || |||||||| ||||||
Sbjct 708 TCCTCCTTGGTCGACATAACGAGCAGTATCATTGAAAACCCGCAGCATTGGAACAATACC 767
Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490
|||||| ||||| || || ||| || |||||| ||||| || || || ||
Sbjct 768 ATTTGATTCTCCATTAGTGCCACGGATGTAACTTCCAGAAGCACGGATGTTGTGAACCGA 827
Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550
| |||||| ||||| || |||| || | ||| || ||| || || ||||| ||
Sbjct 828 AACACCTATACCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTATCATATAT 887
Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592
|| || ||||||||||| ||||| | ||||| |||||
Sbjct 888 TCCTTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 929
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622443142273120
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