Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq7912 111 2e-19 seq3667 109 5e-19 seq37186 102 8e-17 seq526 98.7 9e-16 seq4396 95.1 1e-14 seq2054 95.1 1e-14 seq1045 95.1 1e-14 seq1346 93.3 4e-14 seq25552 89.7 5e-13 seq1703 89.7 5e-13 seq806 86.0 6e-12 seq24793 82.4 7e-11 >seq7912 Length=9007 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || ||||| | |||||| |||| | ||| | Sbjct 6790 ATGCAGATCTTCGTTAAGACTCTCACGGGAAAGACCATCACCCTCGAGGTGGAAAGCTCC 6731 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | |||||| |||||| ||||| ||||| || ||||||||||| Sbjct 6730 GACACAATCGACAACGTCAAAGCCAAGATTCAGGACAAGGAAGGTATCCCTCCCGATCAG 6671 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || || ||||| | || |||||| || |||||||| | || ||| | || ||||| || Sbjct 6670 CAGAGGCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCAG-AACATTGGCAGACTACAA 6612 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| ||||| || ||||| | ||||| || || || ||| | || || Sbjct 6611 CATCCAAAAGGAGTCTACGCTTCATCTCGTTCTCAGGCTTCGTGGTGG 6564 >seq3667 Length=14967 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || |||||||| |||| | ||||| Sbjct 5724 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTCGAGGTCGAATCT 5665 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | |||||| ||||| ||||| ||||| || ||||| || Sbjct 5664 TCCGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGAC 5605 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | || || | || ||| ||||| ||||| || | | | | || |||||| Sbjct 5604 CAGCAGCGGCTGATCTTCGCCGGGAAACAGCTCGAGGACGGGCGCACCCTCGCCGACTAC 5545 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || |||||| |||| || ||||| Sbjct 5544 AACATCCAGAAGGAGTCTACTCTCCACCTCGTCCT 5510 >seq37186 Length=985 Score = 102 bits (112), Expect = 8e-17 Identities = 157/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | ||||| || |||||||| |||| | ||| | Sbjct 666 ATGCAAATCTTCGTTAAGACTCTCACTGGGAAGACGATCACCCTCGAGGTGGAAAGCTCC 607 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || ||| |||||| |||||||| || || ||||||||||| Sbjct 606 GACACCATCGACAACGTTAAAGCCAAGATTCAGGACAAAGAGGGTATCCCTCCCGATCAG 547 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || || || || | || ||| ||||| | || || | || ||| | || ||||| || Sbjct 546 CAGAGGCTTATCTTCGCCGGGAAACAGTTGGAGGACGGCAG-AACATTGGCTGACTACAA 488 Query 26948 CATTCAAAAAGAATCTA-CTATCCATCTGGTCCTGAGACT 26986 ||| |||||||| || | || | ||||| ||||| || || Sbjct 487 CATCCAAAAAGAGTCGACCTCTTCATCTTGTCCTCAGGCT 448 >seq526 Length=33339 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||||||||| ||||| || || |||||||| ||||| | || ||| || || || ||| Sbjct 23067 GACAAAGAAGGTATACCACCGGACCAACAAAGGCTCATCTTCGCCGGTAAGCAGCTTGAA 23126 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 || | ||| | | ||| || ||||| || ||||| |||||| ||||||| ||| || Sbjct 23127 GACGGCCGAACCCTAGCCGATTACAACATCCAGAAAGAGTCTACTCTCCATCTCGTCTTG 23186 Query 26982 AGACTTAGAGGAGG 26995 || || ||||| || Sbjct 23187 AGGCTCAGAGGTGG 23200 >seq4396 Length=13502 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA--- 26822 || ||||| | || || || || | || ||||| |||||||| |||| | ||| Sbjct 11828 AAGATGCAGATATTCGTTAAGACTCTCACCGGAAAGACGATCACCCTCGAGGTGGAAAGC 11887 Query 26823 TCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCC 26882 ||| ||||||||||| | || ||| |||||| ||||| ||||| || || || Sbjct 11888 TCA---GACACCATCGACAACGTTAAAGCCAAGATTCAGGACAAGGAAGGCATTCCCCCG 11944 Query 26883 GATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGAC 26942 ||||| || || || || | || ||| || ||||| ||||||| | | || ||| Sbjct 11945 GATCAGCAGAGGCTTATCTTCGCCGGGAAGCAACTTGAAGATGGGCGTACTCTCGCTGAC 12004 Query 26943 TATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 || ||||| |||||||| || || | ||||| ||||| || || Sbjct 12005 TACAACATCCAAAAAGAGTCGACCCTTCATCTTGTCCTCAGGCT 12048 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || ||| |||| ||||| | |||||| ||||| | || | Sbjct 102 ATGCAGATCTTTGTCAAGACACTAACCGGAAAGACAATCACCCTCGAAGTTGAGAGCTCC 161 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| |||||| ||||| || || || || || || || Sbjct 162 GACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAGGGAATCCCACCGGACCAG 221 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||||| || ||||| |||| | | | | | ||||||||| Sbjct 222 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACCTTGGCTGACTATAAC 281 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || || || || ||||| | || |||| || | || | ||||||| Sbjct 282 ATCCAGAAGGAGTCTACACTTCACTTGGTGTTGCGTCTGCGTGGAGGAA 330 >seq2054 Length=20018 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| ||||| | |||||| |||| | || || Sbjct 3396 AAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAGACCATCACCCTCGAGGTCGAGTCC 3337 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | ||||| ||||| ||||||||||| || ||||| ||| Sbjct 3336 TCCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCAGAT 3277 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG 26925 || || ||| | || | || ||| ||||| |||||||||| Sbjct 3276 CAGCAGAGATTGATCTTCGCCGGTAAACAGCTCGAAGATG 3237 >seq1045 Length=26565 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || | |||||| |||| | || || Sbjct 3021 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACCCTCGAGGTCGAGTCC 2962 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | ||||| ||||| ||||| ||||| || ||||| || Sbjct 2961 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGAC 2902 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | || || | || ||| ||||| ||||| || | | | | || |||||| Sbjct 2901 CAGCAGCGGCTGATCTTCGCCGGGAAACAGCTCGAGGACGGGCGCACCCTCGCCGACTAC 2842 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || |||||| |||| || ||||| Sbjct 2841 AACATCCAGAAGGAGTCTACTCTCCACCTCGTCCT 2807 >seq1346 Length=23970 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||| || || ||||| || |||||||| || || || | || ||||||||||| ||| Sbjct 5784 GACAAGGAGGGAATACCACCGGATCAACAGAGGCTGATATTCGCTGGCAAACAACTTGAA 5843 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| ||||| | | ||||| ||||| || ||||| || ||| | || ||||| || Sbjct 5844 GATGGTAGAACCCTTGCGGACTACAACATCCAGAAAGAGTCAACTCTTCACTTGGTCTTG 5903 Query 26982 AGACTTAGAGGAGG 26995 || ||||| || || Sbjct 5904 AGGCTTAGGGGTGG 5917 >seq25552 Length=2169 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| |||| || || | ||||| ||||| | || || | Sbjct 245 ATGCAGATCTTCGTGAAAACCCTAACGGGCAAGACCATCACTCTCGAAGTCGAGTCCTCC 304 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | |||||| ||||| ||||||||||| || ||||| ||||| Sbjct 305 GACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCTCCGGATCAG 364 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG 26925 || | || || | || ||| ||||| |||||||||| Sbjct 365 CAGCGTCTGATCTTCGCCGGTAAACAGCTCGAAGATG 401 >seq1703 Length=21771 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/234 (69%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 26763 AACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA 26821 |||||| |||||| | || || ||||| | || || || | |||||| |||| | || Sbjct 19057 AACAAAGATGCAAATCTTCGTGAAAACTCTCACCGGGAAGACAATCACCCTCGAGGTGGA 18998 Query 26822 ATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCC 26881 | |||||||||||| | || ||| ||||| ||||| |||||||| ||||| Sbjct 18997 AAGCTCCGACACCATCGACAACGTGAAAGCCAAGATCCAGGACAAGGAAGGGATCCCTCC 18938 Query 26882 CGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGA 26941 ||||| || | ||||| | || ||| || || ||||| |||| | | | | | ||| Sbjct 18937 GGATCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCCGA 18878 Query 26942 CTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || || || || ||||| | || ||||| || | || | ||||| Sbjct 18877 TTACAATATCCAGAAGGAGTCTACGCTTCACTTGGTCTTGCGTCTACGTGGAGG 18824 >seq806 Length=29032 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || |||| ||| |||| | || || Sbjct 18179 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTCGAGGTCGAGTCC 18120 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | ||||| ||||| ||||| |||||||| || || || Sbjct 18119 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCGCCGGAC 18060 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || |||| || | || ||| || || |||||||| | | | || |||||| Sbjct 18059 CAGCAGCGACTGATCTTCGCCGGGAAGCAGCTCGAAGACGGCCGCACACTCGCCGACTAC 18000 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || || | ||||| ||||| Sbjct 17999 AACATCCAGAAGGAGTCGACGCTTCATCTCGTCCT 17965 >seq24793 Length=2311 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || || ||||| |||| ||| | || | || | Sbjct 1613 ATGCAGATCTTCGTTAAGACCTTGACGGGAAAGACGATTACCCTAGAGGTGGAGAGCTCC 1554 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | |||||| |||||| ||||| || || || ||||| || || Sbjct 1553 GACACCATCGACAACGTCAAAGCAAAGATCCAAGACAAGGAGGGTATCCCTCCGGACCAG 1494 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || || | || | || |||||| || || ||||| | || ||| | || ||||| || Sbjct 1493 CAGAGGTTGATCTTCGCCGGCAAGCAGCTTGAAGACGGCAG-AACATTGGCGGACTACAA 1435 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 ||| || || || |||||| | ||||| || || || || Sbjct 1434 CATCCAGAAGGAGTCTACTCTGCATCTCGTTCTCAGGCT 1396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478275090319040