Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq7912 111 2e-19
seq3667 109 5e-19
seq37186 102 8e-17
seq526 98.7 9e-16
seq4396 95.1 1e-14
seq2054 95.1 1e-14
seq1045 95.1 1e-14
seq1346 93.3 4e-14
seq25552 89.7 5e-13
seq1703 89.7 5e-13
seq806 86.0 6e-12
seq24793 82.4 7e-11
>seq7912
Length=9007
Score = 111 bits (122), Expect = 2e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | || || || || | || ||||| | |||||| |||| | ||| |
Sbjct 6790 ATGCAGATCTTCGTTAAGACTCTCACGGGAAAGACCATCACCCTCGAGGTGGAAAGCTCC 6731
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||| ||||| | |||||| |||||| ||||| ||||| || |||||||||||
Sbjct 6730 GACACAATCGACAACGTCAAAGCCAAGATTCAGGACAAGGAAGGTATCCCTCCCGATCAG 6671
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947
|| || ||||| | || |||||| || |||||||| | || ||| | || ||||| ||
Sbjct 6670 CAGAGGCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCAG-AACATTGGCAGACTACAA 6612
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
||| ||||| || ||||| | ||||| || || || ||| | || ||
Sbjct 6611 CATCCAAAAGGAGTCTACGCTTCATCTCGTTCTCAGGCTTCGTGGTGG 6564
>seq3667
Length=14967
Score = 109 bits (120), Expect = 5e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|| ||||| | || || ||||| |||| || || |||||||| |||| | |||||
Sbjct 5724 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTCGAGGTCGAATCT 5665
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
|||||||||||| | |||||| ||||| ||||| ||||| || ||||| ||
Sbjct 5664 TCCGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGAC 5605
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945
|| || | || || | || ||| ||||| ||||| || | | | | || ||||||
Sbjct 5604 CAGCAGCGGCTGATCTTCGCCGGGAAACAGCTCGAGGACGGGCGCACCCTCGCCGACTAC 5545
Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||||| || || || |||||| |||| || |||||
Sbjct 5544 AACATCCAGAAGGAGTCTACTCTCCACCTCGTCCT 5510
>seq37186
Length=985
Score = 102 bits (112), Expect = 8e-17
Identities = 157/220 (71%), Gaps = 3/220 (1%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | || || || || | ||||| || |||||||| |||| | ||| |
Sbjct 666 ATGCAAATCTTCGTTAAGACTCTCACTGGGAAGACGATCACCCTCGAGGTGGAAAGCTCC 607
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||||||||| | || ||| |||||| |||||||| || || |||||||||||
Sbjct 606 GACACCATCGACAACGTTAAAGCCAAGATTCAGGACAAAGAGGGTATCCCTCCCGATCAG 547
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947
|| || || || | || ||| ||||| | || || | || ||| | || ||||| ||
Sbjct 546 CAGAGGCTTATCTTCGCCGGGAAACAGTTGGAGGACGGCAG-AACATTGGCTGACTACAA 488
Query 26948 CATTCAAAAAGAATCTA-CTATCCATCTGGTCCTGAGACT 26986
||| |||||||| || | || | ||||| ||||| || ||
Sbjct 487 CATCCAAAAAGAGTCGACCTCTTCATCTTGTCCTCAGGCT 448
>seq526
Length=33339
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921
||||||||||| ||||| || || |||||||| ||||| | || ||| || || || |||
Sbjct 23067 GACAAAGAAGGTATACCACCGGACCAACAAAGGCTCATCTTCGCCGGTAAGCAGCTTGAA 23126
Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981
|| | ||| | | ||| || ||||| || ||||| |||||| ||||||| ||| ||
Sbjct 23127 GACGGCCGAACCCTAGCCGATTACAACATCCAGAAAGAGTCTACTCTCCATCTCGTCTTG 23186
Query 26982 AGACTTAGAGGAGG 26995
|| || ||||| ||
Sbjct 23187 AGGCTCAGAGGTGG 23200
>seq4396
Length=13502
Score = 95.1 bits (104), Expect = 1e-14
Identities = 156/224 (70%), Gaps = 6/224 (3%)
Strand=Plus/Plus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA--- 26822
|| ||||| | || || || || | || ||||| |||||||| |||| | |||
Sbjct 11828 AAGATGCAGATATTCGTTAAGACTCTCACCGGAAAGACGATCACCCTCGAGGTGGAAAGC 11887
Query 26823 TCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCC 26882
||| ||||||||||| | || ||| |||||| ||||| ||||| || || ||
Sbjct 11888 TCA---GACACCATCGACAACGTTAAAGCCAAGATTCAGGACAAGGAAGGCATTCCCCCG 11944
Query 26883 GATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGAC 26942
||||| || || || || | || ||| || ||||| ||||||| | | || |||
Sbjct 11945 GATCAGCAGAGGCTTATCTTCGCCGGGAAGCAACTTGAAGATGGGCGTACTCTCGCTGAC 12004
Query 26943 TATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986
|| ||||| |||||||| || || | ||||| ||||| || ||
Sbjct 12005 TACAACATCCAAAAAGAGTCGACCCTTCATCTTGTCCTCAGGCT 12048
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | ||||| || ||| |||| ||||| | |||||| ||||| | || |
Sbjct 102 ATGCAGATCTTTGTCAAGACACTAACCGGAAAGACAATCACCCTCGAAGTTGAGAGCTCC 161
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| || | ||||| |||||| ||||| || || || || || || ||
Sbjct 162 GACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAGGGAATCCCACCGGACCAG 221
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| | ||||| | || ||||| || ||||| |||| | | | | | |||||||||
Sbjct 222 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGCACCTTGGCTGACTATAAC 281
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997
|| || || || ||||| | || |||| || | || | |||||||
Sbjct 282 ATCCAGAAGGAGTCTACACTTCACTTGGTGTTGCGTCTGCGTGGAGGAA 330
>seq2054
Length=20018
Score = 95.1 bits (104), Expect = 1e-14
Identities = 117/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|| ||||| | || || ||||| |||| ||||| | |||||| |||| | || ||
Sbjct 3396 AAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAGACCATCACCCTCGAGGTCGAGTCC 3337
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
|||||||||||| | ||||| ||||| ||||||||||| || ||||| |||
Sbjct 3336 TCCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCAGAT 3277
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG 26925
|| || ||| | || | || ||| ||||| ||||||||||
Sbjct 3276 CAGCAGAGATTGATCTTCGCCGGTAAACAGCTCGAAGATG 3237
>seq1045
Length=26565
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|| ||||| | || || ||||| |||| || || | |||||| |||| | || ||
Sbjct 3021 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACCCTCGAGGTCGAGTCC 2962
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
|||||||||||| | ||||| ||||| ||||| ||||| || ||||| ||
Sbjct 2961 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGAC 2902
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945
|| || | || || | || ||| ||||| ||||| || | | | | || ||||||
Sbjct 2901 CAGCAGCGGCTGATCTTCGCCGGGAAACAGCTCGAGGACGGGCGCACCCTCGCCGACTAC 2842
Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||||| || || || |||||| |||| || |||||
Sbjct 2841 AACATCCAGAAGGAGTCTACTCTCCACCTCGTCCT 2807
>seq1346
Length=23970
Score = 93.3 bits (102), Expect = 4e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921
||||| || || ||||| || |||||||| || || || | || ||||||||||| |||
Sbjct 5784 GACAAGGAGGGAATACCACCGGATCAACAGAGGCTGATATTCGCTGGCAAACAACTTGAA 5843
Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981
|||| ||||| | | ||||| ||||| || ||||| || ||| | || ||||| ||
Sbjct 5844 GATGGTAGAACCCTTGCGGACTACAACATCCAGAAAGAGTCAACTCTTCACTTGGTCTTG 5903
Query 26982 AGACTTAGAGGAGG 26995
|| ||||| || ||
Sbjct 5904 AGGCTTAGGGGTGG 5917
>seq25552
Length=2169
Score = 89.7 bits (98), Expect = 5e-13
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | || || ||||| |||| || || | ||||| ||||| | || || |
Sbjct 245 ATGCAGATCTTCGTGAAAACCCTAACGGGCAAGACCATCACTCTCGAAGTCGAGTCCTCC 304
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||||||||| | |||||| ||||| ||||||||||| || ||||| |||||
Sbjct 305 GACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCTCCGGATCAG 364
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG 26925
|| | || || | || ||| ||||| ||||||||||
Sbjct 365 CAGCGTCTGATCTTCGCCGGTAAACAGCTCGAAGATG 401
>seq1703
Length=21771
Score = 89.7 bits (98), Expect = 5e-13
Identities = 161/234 (69%), Gaps = 1/234 (0%)
Strand=Plus/Minus
Query 26763 AACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA 26821
|||||| |||||| | || || ||||| | || || || | |||||| |||| | ||
Sbjct 19057 AACAAAGATGCAAATCTTCGTGAAAACTCTCACCGGGAAGACAATCACCCTCGAGGTGGA 18998
Query 26822 ATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCC 26881
| |||||||||||| | || ||| ||||| ||||| |||||||| |||||
Sbjct 18997 AAGCTCCGACACCATCGACAACGTGAAAGCCAAGATCCAGGACAAGGAAGGGATCCCTCC 18938
Query 26882 CGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGA 26941
||||| || | ||||| | || ||| || || ||||| |||| | | | | | |||
Sbjct 18937 GGATCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCCGA 18878
Query 26942 CTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|| || || || || || ||||| | || ||||| || | || | |||||
Sbjct 18877 TTACAATATCCAGAAGGAGTCTACGCTTCACTTGGTCTTGCGTCTACGTGGAGG 18824
>seq806
Length=29032
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|| ||||| | || || ||||| |||| || || |||| ||| |||| | || ||
Sbjct 18179 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTCGAGGTCGAGTCC 18120
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
|||||||||||| | ||||| ||||| ||||| |||||||| || || ||
Sbjct 18119 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCGCCGGAC 18060
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945
|| || |||| || | || ||| || || |||||||| | | | || ||||||
Sbjct 18059 CAGCAGCGACTGATCTTCGCCGGGAAGCAGCTCGAAGACGGCCGCACACTCGCCGACTAC 18000
Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||||| || || || || || | ||||| |||||
Sbjct 17999 AACATCCAGAAGGAGTCGACGCTTCATCTCGTCCT 17965
>seq24793
Length=2311
Score = 82.4 bits (90), Expect = 7e-11
Identities = 151/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | || || || || || || ||||| |||| ||| | || | || |
Sbjct 1613 ATGCAGATCTTCGTTAAGACCTTGACGGGAAAGACGATTACCCTAGAGGTGGAGAGCTCC 1554
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||||||||| | |||||| |||||| ||||| || || || ||||| || ||
Sbjct 1553 GACACCATCGACAACGTCAAAGCAAAGATCCAAGACAAGGAGGGTATCCCTCCGGACCAG 1494
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947
|| || | || | || |||||| || || ||||| | || ||| | || ||||| ||
Sbjct 1493 CAGAGGTTGATCTTCGCCGGCAAGCAGCTTGAAGACGGCAG-AACATTGGCGGACTACAA 1435
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986
||| || || || |||||| | ||||| || || || ||
Sbjct 1434 CATCCAGAAGGAGTCTACTCTGCATCTCGTTCTCAGGCT 1396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478275090319040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |