Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq41676 95.1 3e-14
seq2241 91.5 4e-13
seq2790 87.8 5e-12
>seq41676
Length=800
Score = 95.1 bits (104), Expect = 3e-14
Identities = 113/151 (75%), Gaps = 2/151 (1%)
Strand=Plus/Minus
Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730
||||||||||| || || || | | | | | ||||||||||| | || | ||||
Sbjct 684 ATGGCACTTCCTCCTTGCCA-CATGTTTCCTCAGTTTTATGTTGCAAATGGAGAGTTTTC 626
Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790
|| |||||||||||| | || |||||||| |||||||||| |||||||| |||||
Sbjct 625 GTGTCAAATGTATCAGTGCTCAGCTGATATCAGTCTTGGTGTACCGTTTAACATTGCTTC 566
Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCAT 111821
||| |||| ||||| ||| | ||||||||
Sbjct 565 ATACTCACTTCTTACATGCATCCTCGCTCAT 535
>seq2241
Length=19256
Score = 91.5 bits (100), Expect = 4e-13
Identities = 146/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730
||||| ||||| || || || | | | ||| ||||| || || || ||| ||| ||
Sbjct 1976 ATGGCGCTTCCTCCGTGCCA-CATGTTTGCACAGTTCTACGTGGCGGAAGGGGAGCTCTC 1918
Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790
|| || ||||||||||| || || ||||| || |||||||| |||||||| |||||
Sbjct 1917 GTGTCAGATGTATCAGCGTTCAGCGGATATGGGCCTTGGTGTGCCGTTTAACATTGCTTC 1858
Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCAT 111850
||| | || || |||||| | | |||||| | ||||| || ||||| || ||
Sbjct 1857 CTACTCTCTTCTGACTTGCATGCTAGCTCATGTGTGTGATCTCGTTCCTGGTGATTTTAT 1798
Query 111851 TCACGTTATCGGAGATGCGCATGTTTA 111877
|| || || || ||||| || || ||
Sbjct 1797 CCATGTCATTGGGGATGCTCACGTGTA 1771
>seq2790
Length=17423
Score = 87.8 bits (96), Expect = 5e-12
Identities = 111/150 (74%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730
||||| ||||| ||||| || | | | ||| ||||| || || | || ||| ||
Sbjct 3765 ATGGCGCTTCCTCCATGCCA-CATGTTTGCTCAGTTCTACGTTGCAAATGGAGAGCTCTC 3707
Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790
|| |||||||||||||| || |||||||| ||||||||||| || ||||| |||||
Sbjct 3706 GTGTCAAATGTATCAGCGCTCAGCTGATATGGGTCTTGGTGTACCTTTTAACATTGCTTC 3647
Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCA 111820
|||| | || ||||| ||| | | |||||
Sbjct 3646 TTACTCCCTTCTTACATGCATTCTAGCTCA 3617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1302272626220424
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |