Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq41676 95.1 3e-14 seq2241 91.5 4e-13 seq2790 87.8 5e-12 >seq41676 Length=800 Score = 95.1 bits (104), Expect = 3e-14 Identities = 113/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| || || || | | | | | ||||||||||| | || | |||| Sbjct 684 ATGGCACTTCCTCCTTGCCA-CATGTTTCCTCAGTTTTATGTTGCAAATGGAGAGTTTTC 626 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 || |||||||||||| | || |||||||| |||||||||| |||||||| ||||| Sbjct 625 GTGTCAAATGTATCAGTGCTCAGCTGATATCAGTCTTGGTGTACCGTTTAACATTGCTTC 566 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||| |||| ||||| ||| | |||||||| Sbjct 565 ATACTCACTTCTTACATGCATCCTCGCTCAT 535 >seq2241 Length=19256 Score = 91.5 bits (100), Expect = 4e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||| ||||| || || || | | | ||| ||||| || || || ||| ||| || Sbjct 1976 ATGGCGCTTCCTCCGTGCCA-CATGTTTGCACAGTTCTACGTGGCGGAAGGGGAGCTCTC 1918 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 || || ||||||||||| || || ||||| || |||||||| |||||||| ||||| Sbjct 1917 GTGTCAGATGTATCAGCGTTCAGCGGATATGGGCCTTGGTGTGCCGTTTAACATTGCTTC 1858 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCAT 111850 ||| | || || |||||| | | |||||| | ||||| || ||||| || || Sbjct 1857 CTACTCTCTTCTGACTTGCATGCTAGCTCATGTGTGTGATCTCGTTCCTGGTGATTTTAT 1798 Query 111851 TCACGTTATCGGAGATGCGCATGTTTA 111877 || || || || ||||| || || || Sbjct 1797 CCATGTCATTGGGGATGCTCACGTGTA 1771 >seq2790 Length=17423 Score = 87.8 bits (96), Expect = 5e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||| ||||| ||||| || | | | ||| ||||| || || | || ||| || Sbjct 3765 ATGGCGCTTCCTCCATGCCA-CATGTTTGCTCAGTTCTACGTTGCAAATGGAGAGCTCTC 3707 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 || |||||||||||||| || |||||||| ||||||||||| || ||||| ||||| Sbjct 3706 GTGTCAAATGTATCAGCGCTCAGCTGATATGGGTCTTGGTGTACCTTTTAACATTGCTTC 3647 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCA 111820 |||| | || ||||| ||| | | ||||| Sbjct 3646 TTACTCCCTTCTTACATGCATTCTAGCTCA 3617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302272626220424