Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq7912 111 1e-19 seq2054 109 5e-19 seq25552 104 2e-17 seq806 104 2e-17 seq24793 102 7e-17 seq12662 95.1 1e-14 seq4396 95.1 1e-14 seq3667 95.1 1e-14 seq1045 95.1 1e-14 seq37186 93.3 4e-14 seq14782 93.3 4e-14 seq1703 89.7 4e-13 seq3737 86.0 5e-12 seq964 86.0 5e-12 >seq7912 Length=9007 Score = 111 bits (122), Expect = 1e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || ||||| | || ||| |||| || || | | Sbjct 6790 ATGCAGATCTTCGTTAAGACTCTCACGGGAAAGACCATCACCCTCGAGGTGGAAAGCTCC 6731 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | |||||| |||||| ||||| ||||| || ||||||||||| Sbjct 6730 GACACAATCGACAACGTCAAAGCCAAGATTCAGGACAAGGAAGGTATCCCTCCCGATCAG 6671 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | || ||||||||| |||||||| | ||| ||| | || || || || Sbjct 6670 CAGAGGCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCAG-AACATTGGCAGACTACAA 6612 Query 24170 CATTCAAAAAGAATCTACAATTCAT 24194 ||| ||||| || ||||| ||||| Sbjct 6611 CATCCAAAAGGAGTCTACGCTTCAT 6587 >seq2054 Length=20018 Score = 109 bits (120), Expect = 5e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| ||||| | || ||| |||| |||||| || Sbjct 3396 AAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAGACCATCACCCTCGAGGTCGAGTCC 3337 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||||||||| || ||||| ||| Sbjct 3336 TCCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCAGAT 3277 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 || |||||| |||| | || ||| || || |||||||||| Sbjct 3276 CAGCAGAGATTGATCTTCGCCGGTAAACAGCTCGAAGATG 3237 >seq25552 Length=2169 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | || || ||||||||||| || | Sbjct 245 ATGCAGATCTTCGTGAAAACCCTAACGGGCAAGACCATCACTCTCGAAGTCGAGTCCTCC 304 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| ||||| ||||||||||| || ||||| ||||| Sbjct 305 GACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCTCCGGATCAG 364 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| | ||||| | || ||| || || |||||||||| Sbjct 365 CAGCGTCTGATCTTCGCCGGTAAACAGCTCGAAGATG 401 >seq806 Length=29032 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || |||| ||| |||| |||||| || Sbjct 18179 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTCGAGGTCGAGTCC 18120 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||| ||||| || || || || Sbjct 18119 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCGCCGGAC 18060 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| ||||||| | || ||| ||||| |||||||| | | | | || ||| || Sbjct 18059 CAGCAGCGACTGATCTTCGCCGGGAAGCAGCTCGAAGACGGCCGCACACTCGCCGACTAC 18000 Query 24168 AACATTCAAAAAGAATCTACAATTCAT 24194 ||||| || || || || || ||||| Sbjct 17999 AACATCCAGAAGGAGTCGACGCTTCAT 17973 >seq24793 Length=2311 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || || ||||| |||||||| | || || ||| | | Sbjct 1613 ATGCAGATCTTCGTTAAGACCTTGACGGGAAAGACGATTACCCTAGAGGTGGAGAGCTCC 1554 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| |||||| ||||| || || || ||||| || || Sbjct 1553 GACACCATCGACAACGTCAAAGCAAAGATCCAAGACAAGGAGGGTATCCCTCCGGACCAG 1494 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| |||| | || ||||||||| || ||||| | ||| ||| | || || || || Sbjct 1493 CAGAGGTTGATCTTCGCCGGCAAGCAGCTTGAAGACGGCAG-AACATTGGCGGACTACAA 1435 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| || || || ||||| Sbjct 1434 CATCCAGAAGGAGTCTAC 1417 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || ||||| | || ||| |||| || || | Sbjct 1841 ATGCAGATTTTTGTTAAGACTCTCACGGGAAAGACAATCACCCTCGAGGTGGAAAGCTCA 1782 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| |||||| ||||| || ||||| || || ||||| Sbjct 1781 GACACCATCGACAACGTTAAAGCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAG 1722 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || ||| ||||| ||||| || | ||| | || ||||| ||| Sbjct 1721 CAGAGGCTTATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGGACTCTCGCTGATTACAAC 1662 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || || || || || ||||| Sbjct 1661 ATCCAGAAGGAGTCGACCCTTCAT 1638 >seq12662 Length=5898 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || || ||||| |||||||| | || || ||| | | Sbjct 3489 ATGCAGATCTTCGTTAAGACCTTGACGGGAAAGACGATTACCCTAGAGGTGGAGAGCTCC 3548 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| |||||| ||||| || || || || || || || Sbjct 3549 GACACCATCGACAACGTCAAAGCAAAGATCCAAGACAAGGAGGGGATCCCACCGGACCAG 3608 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || |||||||| || ||||| | ||||| || || || ||| Sbjct 3609 CAGAGGTTGATCTTCGCAGGCAAGCAGCTTGAAGACGGCAGAACTCTCGCTGACTACAAC 3668 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || ||||| Sbjct 3669 ATCCAGAAGGAGTCTAC 3685 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || ||||| | || ||| |||| || || | Sbjct 3261 ATGCAGATTTTTGTTAAGACTCTCACGGGAAAGACAATCACCCTCGAGGTGGAAAGCTCA 3320 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| |||||| ||||| || ||||| || || ||||| Sbjct 3321 GACACCATCGACAACGTTAAAGCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAG 3380 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || ||| ||||| ||||| || | ||| | || ||||| ||| Sbjct 3381 CAGAGGCTTATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGGACTCTCGCTGATTACAAC 3440 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || || || || || ||||| Sbjct 3441 ATCCAGAAGGAGTCGACCCTTCAT 3464 >seq4396 Length=13502 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || || || | || ||||| |||| ||| |||| || || | Sbjct 11828 AAGATGCAGATATTCGTTAAGACTCTCACCGGAAAGACGATCACCCTCGAGGTGGAAAGC 11887 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||||||||| | || ||| |||||| ||||| |||||||| || || ||| Sbjct 11888 TCAGACACCATCGACAACGTTAAAGCCAAGATTCAGGACAAGGAAGGCATTCCCCCGGAT 11947 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||||| || || | || ||| |||||||| ||||||| | | || || || Sbjct 11948 CAGCAGAGGCTTATCTTCGCCGGGAAGCAACTTGAAGATGGGCGTACTCTCGCTGACTAC 12007 Query 24168 AACATTCAAAAAGAATCTACAATTCAT 24194 ||||| |||||||| || || ||||| Sbjct 12008 AACATCCAAAAAGAGTCGACCCTTCAT 12034 >seq3667 Length=14967 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || |||| ||| |||| ||||| | Sbjct 5724 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTCGAGGTCGAATCT 5665 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | |||||| ||||| ||||| |||||||| ||||| || Sbjct 5664 TCCGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGAC 5605 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||| | || ||| || || ||||| || | | | | || ||| || Sbjct 5604 CAGCAGCGGCTGATCTTCGCCGGGAAACAGCTCGAGGACGGGCGCACCCTCGCCGACTAC 5545 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || || || ||||| Sbjct 5544 AACATCCAGAAGGAGTCTAC 5525 >seq1045 Length=26565 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || | || ||| |||| |||||| || Sbjct 3021 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACCCTCGAGGTCGAGTCC 2962 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||| |||||||| ||||| || Sbjct 2961 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGAC 2902 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||| | || ||| || || ||||| || | | | | || ||| || Sbjct 2901 CAGCAGCGGCTGATCTTCGCCGGGAAACAGCTCGAGGACGGGCGCACCCTCGCCGACTAC 2842 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || || || ||||| Sbjct 2841 AACATCCAGAAGGAGTCTAC 2822 >seq37186 Length=985 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | ||||| || |||| ||| |||| || || | | Sbjct 666 ATGCAAATCTTCGTTAAGACTCTCACTGGGAAGACGATCACCCTCGAGGTGGAAAGCTCC 607 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| |||||| |||||||| || || ||||||||||| Sbjct 606 GACACCATCGACAACGTTAAAGCCAAGATTCAGGACAAAGAGGGTATCCCTCCCGATCAG 547 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | || ||| || || | || || | ||| ||| | || || || || Sbjct 546 CAGAGGCTTATCTTCGCCGGGAAACAGTTGGAGGACGGCAG-AACATTGGCTGACTACAA 488 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| |||||||| || || Sbjct 487 CATCCAAAAAGAGTCGAC 470 >seq14782 Length=4961 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | || || ||||| |||| || || |||| ||| | || ||||| | Sbjct 2198 AAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTCGAATCA 2139 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||| ||||| | ||||| |||||| ||||| ||||| || || || || Sbjct 2138 TCCGACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGGATCCCACCGGAC 2079 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||| | || ||| ||||| || ||||| | || | | || ||||| Sbjct 2078 CAGCAGCGTCTGATCTTCGCCGGGAAGCAGCTGGAAGACGGAAGGACCCTCGCGGATTAC 2019 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| || || || || || |||| | || | | ||||||||||| Sbjct 2018 AACATCCAGAAGGAGTCGACTCTTCACCTGGTTCTCCGTCTGAGAGGAGGA 1968 >seq1703 Length=21771 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/219 (69%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 23985 AACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 |||||| |||||| | || || ||||| | || || || | || ||| |||| || || Sbjct 19057 AACAAAGATGCAAATCTTCGTGAAAACTCTCACCGGGAAGACAATCACCCTCGAGGTGGA 18998 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 | |||||||||||| | || ||| ||||| ||||| ||||| || ||||| Sbjct 18997 AAGCTCCGACACCATCGACAACGTGAAAGCCAAGATCCAGGACAAGGAAGGGATCCCTCC 18938 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGA 24163 ||||| ||| | || || | || ||| ||||| ||||| |||| | | | | ||| Sbjct 18937 GGATCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCCGA 18878 Query 24164 TTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||| || || || || || ||||| |||| || || || Sbjct 18877 TTACAATATCCAGAAGGAGTCTACGCTTCACTTGGTCTT 18839 >seq3737 Length=14779 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || ||||| |||| ||| |||| || || | | Sbjct 9509 ATGCAGATATTCGTTAAGACTCTTACCGGAAAGACGATCACCCTCGAGGTTGAAAGCTCC 9450 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || | | ||||| ||| || ||||| || ||||||||||| Sbjct 9449 GACACGATCGACAACGTTACAGCCAAGATCCACGATAAGGAAGGTATCCCTCCCGATCAG 9390 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || ||| ||||| |||||||||| ||| | | ||||| ||| Sbjct 9389 CAGAGGTTGATCTTCGCCGGTAAGCAGCTCGAAGATGGCAGGACTCTTGCTGATTACAAC 9330 Query 24171 ATTCAAAAAG 24180 || || |||| Sbjct 9329 ATCCACAAAG 9320 >seq964 Length=27231 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || || || | || || ||||||||||| | | Sbjct 9493 ATGCAAATTTTCGTGAAAACTCTCACCGGCAAGACCATCACTCTCGAAGTCGAGAGCTCC 9552 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | ||||| ||||| ||||| ||||| || ||||| || || Sbjct 9553 GATACCATCGATAACGTCAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCAG 9612 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || ||| || || ||||| |||| | | | | |||||| || Sbjct 9613 CAGAGGCTCATCTTCGCCGGTAAACAGCTCGAGGATGGACGTACCTTGGCCGATTACAAT 9672 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || | ||| | || | || |||||||| || Sbjct 9673 ATCCAGAAGGAGTCGACTCTCCATCTCGTTCTCAGGTTGAGAGGTGG 9719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429596814353460