Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq11485 93.3 4e-14 seq7912 84.2 2e-11 >seq11485 Length=6519 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| ||||| || ||||| || |||||||||||| | ||| |||| | Sbjct 4934 ATGCAGATTTTCGTCAAGACACTCACCGGTAAAACCATTACCCTTGAAGTGGAGAGCTCT 4993 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | ||||| || ||| || ||| || || |||||| |||| || || Sbjct 4994 GACAC-GATCGACAATGTGAAAGCGAAGATTCAGGACAAGGAAGGCATCCCTCCGGACCA 5052 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| ||||| || | || || ||||| | || |||| || |||| ||||| || Sbjct 5053 GCAGAGACTCATCTTCGCTGGGAAACAGCTCGAGGATGGTCGGACTTTGGCTGATTACAA 5112 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 ||| || || ||||||||| | || |||| Sbjct 5113 CATCCAGAAGGAGTCTACTCTTCACTTGGT 5142 >seq7912 Length=9007 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || || || ||||||||||| ||||| ||| |||| ||| | | Sbjct 6790 ATGCAGATCTTCGTTAAGACTCTCACGGGAAAGACCATCACCCTCGAGGTGGAAAGCTCC 6731 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | ||||| || ||| || ||| || || ||||| |||| ||||| Sbjct 6730 GACAC-AATCGACAACGTCAAAGCCAAGATTCAGGACAAGGAAGGTATCCCTCCCGATCA 6672 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || || | || ||||| || | ||||| | || ||| |||| || || || Sbjct 6671 GCAGAGGCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCAGAACATTGGCAGACTACAA 6612 Query 115465 CATTCAAAAAGAGTCTAC 115482 ||| ||||| |||||||| Sbjct 6611 CATCCAAAAGGAGTCTAC 6594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425008437079840