Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq964 116 3e-21 seq11485 109 5e-19 seq1703 105 6e-18 seq20570 104 2e-17 seq25552 93.3 4e-14 seq7912 91.5 1e-13 seq2054 89.7 4e-13 seq37186 84.2 2e-11 >seq964 Length=27231 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| | ||||| || ||||||| ||||||| ||| || Sbjct 9493 ATGCAAATTTTCGTGAAAACTCTCACCGGCAAGACCATCACTCTCGAAGTCGAGAGCTCC 9552 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | || | ||| || ||| ||||| ||||| ||||| || ||||| Sbjct 9553 GATACCATCGA-TAACGTCAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCA 9611 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || ||||| ||||| | || |||| || || ||| ||||||||| Sbjct 9612 GCAGAGGCTCATCTTCGCCGGTAAACAGCTCGAGGATGGACGTACCTTGGCCGATTACAA 9671 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || || || || || || ||| | || || ||| | ||||| || Sbjct 9672 TATCCAGAAGGAGTCGACTCTCCATCTCGTTCTCAGGTTGAGAGGTGG 9719 Score = 98.7 bits (108), Expect = 9e-16 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || ||| ||||||| | || |||||| ||| Sbjct 10177 ATGCAGATTTTTGTGAAGACCCTCACTGGCAAAACCATCACTTTGGAGGTGGAGAGCTCT 10236 Query 25059 GACACTATCGAGTCAC-TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| | || | ||| | || | ||| ||||| |||||||| ||||| |||| Sbjct 10237 GACACGATCGA-TAACGTCAAGGCTAAGATTCAG-GACAAGGAAGGGATCCCACCGGACC 10294 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| | | || || || || ||||| | || |||| ||| || | | ||||||| Sbjct 10295 AGCAGAGACTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGTACGCTTGCAGATTACA 10354 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 |||| || || || || || || || Sbjct 10355 ATATCCAGAAGGAGTCGACCCTTCA 10379 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || ||||||| | || || ||| || Sbjct 9721 ATGCAGATCTTCGTCAAGACTTTGACGGGAAAGACCATCACTCTGGAGGTTGAGAGCTCC 9780 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || || || ||| || ||| ||||| || || || || || || | Sbjct 9781 GACACTATTGA--CAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATC 9838 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || |||||||||| || || || | || |||| |||||| | | || |||| Sbjct 9839 AGCAGAGGCTTATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACGCTCGCTGACTACA 9898 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 | || || || || || ||||| || Sbjct 9899 ACATCCAGAAGGAGTCGACGCTTCA 9923 >seq11485 Length=6519 Score = 109 bits (120), Expect = 5e-19 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || ||||||| | || || ||| || Sbjct 4706 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAGACCATCACTTTGGAGGTTGAGAGCTCC 4765 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| || || || |||| ||| ||| ||||| ||||| ||||| || ||| Sbjct 4766 GACACTATTGA--CAATGTGAAAGC-AAAGATCCAGGACAAGGAAGGAATTCCTCCGGAC 4822 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | || || || || ||||| | || |||| ||||| | | |||||| Sbjct 4823 CAGCAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGACGCACGCTTGCGGATTAC 4882 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || || || ||||| ||| | || || Sbjct 4883 AATATTCAGAAGGAGTCTACGCTTCATCTCGTCCT 4917 >seq1703 Length=21771 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | || || | || |||||| || Sbjct 18594 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACTATTACTTTGGAGGTGGAGAGCTCC 18535 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || || || | || || | ||| || || |||||||| ||||||||| Sbjct 18534 GATACTATTGA--CAATGTCAAGGCTAAGATTCAG-GATAAGGAAGGGATCCCACCTGAC 18478 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || |||||||| || || || || |||| | ||| | | || ||| Sbjct 18477 CAGCAGAGGTTGATCTTTGCCGGGAAGCAGTTGGAGGATGGGAGGACTCTTGCTGACTAC 18418 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || |||||||| ||||| || || || | | ||| | ||||| Sbjct 18417 AACATCCAGAAAGAATCTACGCTTCACTTGGTCTTGCGTCTACGTGGAGG 18368 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| | ||||| || | ||||| |||| ||||| || Sbjct 19050 ATGCAAATCTTCGTGAAAACTCTCACCGGGAAGACAATCACCCTCGAGGTGGAAAGCTCC 18991 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| |||| || ||| ||||| |||||||| || || || || Sbjct 18990 GACACCATCGACAACGTGAAAGCCAAGATCCAGGACAAGGAAGGGATCCCTCCGGATCAG 18931 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||| || || | || |||| |||||| ||| |||||||||| Sbjct 18930 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCCGATTACAAT 18871 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || ||||| || || || | | ||| | ||||| Sbjct 18870 ATCCAGAAGGAGTCTACGCTTCACTTGGTCTTGCGTCTACGTGGAGG 18824 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | ||||| || | |||||| | || || ||| ||| Sbjct 18138 ATGCAGATCTTTGTCAAGACTCTTACCGGGAAGACTATCACATTGGAGGTTGAGAGCTCT 18079 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || ||||| || ||| ||||| ||||| || || || || || Sbjct 18078 GACACTATTGACAACGTGAAGGCTAAGATCCAGGACAAGGAAGGTATCCCTCCGGATCAG 18019 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || || || || | || |||| |||||| ||| || |||||| Sbjct 18018 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCAGACTACAAT 17959 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 17958 ATCCAGAAGGAGTCGACTCTTCACTTGGTCCT 17927 >seq20570 Length=3172 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| || | ||||| | || |||||| || Sbjct 290 ATGCAGATCTTTGTCAAGACATTGACCGGAAAGACAATCACTTTGGAGGTGGAGAGCTCC 231 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| || ||| || || || ||||| ||||||||||| Sbjct 230 GACACTATTGACAACGTTAAGGCTAAGATCCAGGATAAGGAGGGGATCCCACCTGACCAG 171 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| ||| | || |||| | ||| | | || ||||| Sbjct 170 CAGAGGTTGATCTTTGCCGGCAAGCAACTCGAGGATGGAAGGACTCTTGCTGACTACAAC 111 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || | ||| | || || ||||| | ||||| Sbjct 110 ATCCAGAAGGAGTCAACTTTGCATCTCGTCCTCAGGCTTCGTGGAGG 64 >seq25552 Length=2169 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || || ||||||| ||||||| ||||| || Sbjct 245 ATGCAGATCTTCGTGAAAACCCTAACGGGCAAGACCATCACTCTCGAAGTCGAGTCCTCC 304 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || |||| || | || ||||||||||| || || || || Sbjct 305 GACACCATCGA--CAATGTCAAAGCCAAGATCCAA-GACAAAGAAGGTATCCCTCCGGAT 361 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || ||||| ||||| | ||||||| || ||| ||| || ||| Sbjct 362 CAGCAGCGTCTGATCTTCGCCGGTAAACAGCTCGAAGATGGCCGTACTTTGGCTGACTAC 421 Query 25176 AATATTCAAAAAG 25188 || || || |||| Sbjct 422 AACATCCAGAAAG 434 >seq7912 Length=9007 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || |||| || | || || ||| || Sbjct 6562 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATTACTTTGGAGGTTGAGAGCTCC 6503 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| || || || || || ||||| Sbjct 6502 GACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCGGACCAG 6443 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || || || ||||| | || |||| |||||| | | ||| ||||| Sbjct 6442 CAGAGGCTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGCACCTTAGCCGACTACAAC 6383 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTG 25208 || ||||| || ||||| || || || ||| Sbjct 6382 ATCCAAAAGGAGTCCACACTTCACTTGGTG 6353 >seq2054 Length=20018 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | ||||| || ||||||| |||| || ||||| || Sbjct 3393 ATGCAGATCTTCGTGAAAACCCTAACCGGAAAGACCATCACCCTCGAGGTCGAGTCCTCC 3334 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| || ||| ||||||||||| || || || || | Sbjct 3333 GACACCATCGA--CAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCAGATC 3276 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| | | || || ||||| ||||| | ||||||| || ||| ||| || |||| Sbjct 3275 AGCAGAGATTGATCTTCGCCGGTAAACAGCTCGAAGATGGCCGTACTTTGGCTGACTACA 3216 Query 25177 ATATTCAAAAAG 25188 | || || |||| Sbjct 3215 ACATCCAGAAAG 3204 >seq37186 Length=985 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/222 (69%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || ||||||| |||| |||||| || Sbjct 437 ATGCAGATCTTCGTCAAGACCCTTACCGGAAAGACCATCACTCTCGAGGTGGAGAGCTCG 378 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| | || || | ||| ||||| || || || ||||| || Sbjct 377 GACACCATCGATAATGTCA---AGGCTAAGATTCAG-GACAAGGAGGGAATCCCACCGGA 322 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || ||||||||||| || | || | | | ||| | | || || Sbjct 321 CCAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGTCGGCAGGACTCTCGCTGACTA 262 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||| || ||||| || || || | ||| | || || ||||| Sbjct 261 CAACATCCAAAAGGAGTCAACTTTGCATCTCGTTCTCAGGCT 220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432986138332580