Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq964 116 3e-21
seq11485 109 5e-19
seq1703 105 6e-18
seq20570 104 2e-17
seq25552 93.3 4e-14
seq7912 91.5 1e-13
seq2054 89.7 4e-13
seq37186 84.2 2e-11
>seq964
Length=27231
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || || ||| | ||||| || ||||||| ||||||| ||| ||
Sbjct 9493 ATGCAAATTTTCGTGAAAACTCTCACCGGCAAGACCATCACTCTCGAAGTCGAGAGCTCC 9552
Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || ||||| | || | ||| || ||| ||||| ||||| ||||| || |||||
Sbjct 9553 GATACCATCGA-TAACGTCAAGGCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCA 9611
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | || || ||||| ||||| | || |||| || || ||| |||||||||
Sbjct 9612 GCAGAGGCTCATCTTCGCCGGTAAACAGCTCGAGGATGGACGTACCTTGGCCGATTACAA 9671
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||| || || || || || || ||| | || || ||| | ||||| ||
Sbjct 9672 TATCCAGAAGGAGTCGACTCTCCATCTCGTTCTCAGGTTGAGAGGTGG 9719
Score = 98.7 bits (108), Expect = 9e-16
Identities = 148/205 (72%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | || || ||| ||||||| | || |||||| |||
Sbjct 10177 ATGCAGATTTTTGTGAAGACCCTCACTGGCAAAACCATCACTTTGGAGGTGGAGAGCTCT 10236
Query 25059 GACACTATCGAGTCAC-TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| ||||| | || | ||| | || | ||| ||||| |||||||| ||||| ||||
Sbjct 10237 GACACGATCGA-TAACGTCAAGGCTAAGATTCAG-GACAAGGAAGGGATCCCACCGGACC 10294
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||| | | || || || || ||||| | || |||| ||| || | | |||||||
Sbjct 10295 AGCAGAGACTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGTACGCTTGCAGATTACA 10354
Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201
|||| || || || || || || ||
Sbjct 10355 ATATCCAGAAGGAGTCGACCCTTCA 10379
Score = 89.7 bits (98), Expect = 4e-13
Identities = 144/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||||||||| || || ||||||| | || || ||| ||
Sbjct 9721 ATGCAGATCTTCGTCAAGACTTTGACGGGAAAGACCATCACTCTGGAGGTTGAGAGCTCC 9780
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|||||||| || || || ||| || ||| ||||| || || || || || || |
Sbjct 9781 GACACTATTGA--CAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATC 9838
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||| || |||||||||| || || || | || |||| |||||| | | || ||||
Sbjct 9839 AGCAGAGGCTTATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACGCTCGCTGACTACA 9898
Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201
| || || || || || ||||| ||
Sbjct 9899 ACATCCAGAAGGAGTCGACGCTTCA 9923
>seq11485
Length=6519
Score = 109 bits (120), Expect = 5e-19
Identities = 155/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||||||||| || || ||||||| | || || ||| ||
Sbjct 4706 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAGACCATCACTTTGGAGGTTGAGAGCTCC 4765
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|||||||| || || || |||| ||| ||| ||||| ||||| ||||| || |||
Sbjct 4766 GACACTATTGA--CAATGTGAAAGC-AAAGATCCAGGACAAGGAAGGAATTCCTCCGGAC 4822
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||| | | || || || || ||||| | || |||| ||||| | | ||||||
Sbjct 4823 CAGCAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGACGCACGCTTGCGGATTAC 4882
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||||| || || || ||||| ||| | || ||
Sbjct 4883 AATATTCAGAAGGAGTCTACGCTTCATCTCGTCCT 4917
>seq1703
Length=21771
Score = 105 bits (116), Expect = 6e-18
Identities = 163/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||||||||| || || | || || | || |||||| ||
Sbjct 18594 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACTATTACTTTGGAGGTGGAGAGCTCC 18535
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| ||||| || || || | || || | ||| || || |||||||| |||||||||
Sbjct 18534 GATACTATTGA--CAATGTCAAGGCTAAGATTCAG-GATAAGGAAGGGATCCCACCTGAC 18478
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||| || | || |||||||| || || || || |||| | ||| | | || |||
Sbjct 18477 CAGCAGAGGTTGATCTTTGCCGGGAAGCAGTTGGAGGATGGGAGGACTCTTGCTGACTAC 18418
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || || |||||||| ||||| || || || | | ||| | |||||
Sbjct 18417 AACATCCAGAAAGAATCTACGCTTCACTTGGTCTTGCGTCTACGTGGAGG 18368
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || || ||| | ||||| || | ||||| |||| ||||| ||
Sbjct 19050 ATGCAAATCTTCGTGAAAACTCTCACCGGGAAGACAATCACCCTCGAGGTGGAAAGCTCC 18991
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| |||| || ||| ||||| |||||||| || || || ||
Sbjct 18990 GACACCATCGACAACGTGAAAGCCAAGATCCAGGACAAGGAAGGGATCCCTCCGGATCAG 18931
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || || ||||| || || | || |||| |||||| ||| ||||||||||
Sbjct 18930 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCCGATTACAAT 18871
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || || || || ||||| || || || | | ||| | |||||
Sbjct 18870 ATCCAGAAGGAGTCTACGCTTCACTTGGTCTTGCGTCTACGTGGAGG 18824
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||| | ||||| || | |||||| | || || ||| |||
Sbjct 18138 ATGCAGATCTTTGTCAAGACTCTTACCGGGAAGACTATCACATTGGAGGTTGAGAGCTCT 18079
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|||||||| || ||||| || ||| ||||| ||||| || || || || ||
Sbjct 18078 GACACTATTGACAACGTGAAGGCTAAGATCCAGGACAAGGAAGGTATCCCTCCGGATCAG 18019
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || || || || || || | || |||| |||||| ||| || ||||||
Sbjct 18018 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCAGACTACAAT 17959
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || || || || || || ||
Sbjct 17958 ATCCAGAAGGAGTCGACTCTTCACTTGGTCCT 17927
>seq20570
Length=3172
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| |||||||| || | ||||| | || |||||| ||
Sbjct 290 ATGCAGATCTTTGTCAAGACATTGACCGGAAAGACAATCACTTTGGAGGTGGAGAGCTCC 231
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|||||||| || | ||| || ||| || || || ||||| |||||||||||
Sbjct 230 GACACTATTGACAACGTTAAGGCTAAGATCCAGGATAAGGAGGGGATCCCACCTGACCAG 171
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||||||||| ||| | || |||| | ||| | | || |||||
Sbjct 170 CAGAGGTTGATCTTTGCCGGCAAGCAACTCGAGGATGGAAGGACTCTTGCTGACTACAAC 111
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || || || || || | ||| | || || ||||| | |||||
Sbjct 110 ATCCAGAAGGAGTCAACTTTGCATCTCGTCCTCAGGCTTCGTGGAGG 64
>seq25552
Length=2169
Score = 93.3 bits (102), Expect = 4e-14
Identities = 138/193 (72%), Gaps = 6/193 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || || | || || || ||||||| ||||||| ||||| ||
Sbjct 245 ATGCAGATCTTCGTGAAAACCCTAACGGGCAAGACCATCACTCTCGAAGTCGAGTCCTCC 304
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| ||||| || || |||| || | || ||||||||||| || || || ||
Sbjct 305 GACACCATCGA--CAATGTCAAAGCCAAGATCCAA-GACAAAGAAGGTATCCCTCCGGAT 361
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| | || || ||||| ||||| | ||||||| || ||| ||| || |||
Sbjct 362 CAGCAGCGTCTGATCTTCGCCGGTAAACAGCTCGAAGATGGCCGTACTTTGGCTGACTAC 421
Query 25176 AATATTCAAAAAG 25188
|| || || ||||
Sbjct 422 AACATCCAGAAAG 434
>seq7912
Length=9007
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||||||||| || || |||| || | || || ||| ||
Sbjct 6562 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATTACTTTGGAGGTTGAGAGCTCC 6503
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || || | ||| || ||| ||||| || || || || || |||||
Sbjct 6502 GACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCGGACCAG 6443
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || || || || ||||| | || |||| |||||| | | ||| |||||
Sbjct 6442 CAGAGGCTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGCACCTTAGCCGACTACAAC 6383
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTG 25208
|| ||||| || ||||| || || || |||
Sbjct 6382 ATCCAAAAGGAGTCCACACTTCACTTGGTG 6353
>seq2054
Length=20018
Score = 89.7 bits (98), Expect = 4e-13
Identities = 136/192 (71%), Gaps = 4/192 (2%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || || | ||||| || ||||||| |||| || ||||| ||
Sbjct 3393 ATGCAGATCTTCGTGAAAACCCTAACCGGAAAGACCATCACCCTCGAGGTCGAGTCCTCC 3334
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| ||||| || || ||| || ||| ||||||||||| || || || || |
Sbjct 3333 GACACCATCGA--CAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCAGATC 3276
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||| | | || || ||||| ||||| | ||||||| || ||| ||| || ||||
Sbjct 3275 AGCAGAGATTGATCTTCGCCGGTAAACAGCTCGAAGATGGCCGTACTTTGGCTGACTACA 3216
Query 25177 ATATTCAAAAAG 25188
| || || ||||
Sbjct 3215 ACATCCAGAAAG 3204
>seq37186
Length=985
Score = 84.2 bits (92), Expect = 2e-11
Identities = 153/222 (69%), Gaps = 8/222 (4%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | ||||| || ||||||| |||| |||||| ||
Sbjct 437 ATGCAGATCTTCGTCAAGACCCTTACCGGAAAGACCATCACTCTCGAGGTGGAGAGCTCG 378
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||| ||||| |||| | || || | ||| ||||| || || || ||||| ||
Sbjct 377 GACACCATCGATAATGTCA---AGGCTAAGATTCAG-GACAAGGAGGGAATCCCACCGGA 322
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| ||| || | || ||||||||||| || | || | | | ||| | | || ||
Sbjct 321 CCAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGTCGGCAGGACTCTCGCTGACTA 262
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
||| || ||||| || || || | ||| | || || |||||
Sbjct 261 CAACATCCAAAAGGAGTCAACTTTGCATCTCGTTCTCAGGCT 220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 432986138332580
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