Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3586 91.5 2e-13 seq31158 89.7 6e-13 seq5279 89.7 6e-13 seq2238 89.7 6e-13 seq14996 87.8 2e-12 seq5385 87.8 2e-12 seq2798 87.8 2e-12 seq6385 86.0 7e-12 seq2688 86.0 7e-12 seq617 86.0 7e-12 seq13744 84.2 2e-11 seq12372 84.2 2e-11 seq9219 84.2 2e-11 seq9189 84.2 2e-11 seq5857 84.2 2e-11 seq1484 84.2 2e-11 seq1198 84.2 2e-11 seq10721 82.4 8e-11 seq8482 82.4 8e-11 seq8229 82.4 8e-11 seq6663 82.4 8e-11 seq2675 82.4 8e-11 seq2529 82.4 8e-11 seq2246 82.4 8e-11 seq2052 82.4 8e-11 seq1446 82.4 8e-11 seq633 82.4 8e-11 seq39 82.4 8e-11 >seq3586 Length=15182 Score = 91.5 bits (100), Expect = 2e-13 Identities = 81/99 (82%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | | ||||||| Sbjct 6814 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGCAAGGGCGTGGG 6757 Query 126328 TTCGAACCCCACACCTGACAAAT-TATTATTGGAATTTT 126365 ||| || |||||| ||| ||| | | ||||| |||||| Sbjct 6756 TTCAAATCCCACAGCTGTCAACTATTTTATTTTAATTTT 6718 >seq31158 Length=1417 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/90 (83%), Gaps = 3/90 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | | ||||||| Sbjct 994 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGCAAGGGCGTGGG 937 Query 126328 TTCGAACCCCACACCTGACAAATTATTATT 126357 ||| || |||||| ||| | |||| ||||| Sbjct 936 TTCAAAGCCCACAGCTGTC-AATTTTTATT 908 >seq5279 Length=12077 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/90 (83%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | | ||||||| Sbjct 359 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGCAAGGGCGTGGG 416 Query 126328 TTCGAACCCCACACCTGACAAATTATTATT 126357 ||| || |||||| ||| | |||| ||||| Sbjct 417 TTCAAATCCCACAGCTGTC-AATTTTTATT 445 >seq2238 Length=19260 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/111 (79%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 93110 AAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGT 93169 || || |||||||| || |||||||||||| ||| || ||||| |||| || |||||| Sbjct 11379 AAGCCGTCGTCTCGAGAGATCAACTCATTGGAGAAGGTCAAACCAGGTATGAGCCCTCGT 11438 Query 93170 TTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATACCTTC 93219 ||||||||||| || || | |||| || ||||| || || || || ||||| Sbjct 11439 TTCTTGAGCCAGAAGATCG-AGCAGAAGCTACCGGAGAAGAAGATCCCTTC 11488 >seq14996 Length=4876 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 1568 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 1511 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| |||||||| ||||||| Sbjct 1510 GCGTGGGTTCAAACCCCACTTCTGACAA 1483 >seq5385 Length=11940 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAG--- 126321 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| ||| Sbjct 3020 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 3077 Query 126322 -CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||| || ||||| ||||||| Sbjct 3078 ACGTGGGTTCAAATCCCACTTCTGACAA 3105 >seq2798 Length=17403 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 12166 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 12223 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| ||||| ||| Sbjct 12224 GGGTTCAAATCCCACAGCTGTCAAATAATT 12253 >seq6385 Length=10565 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 3822 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 3765 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| |||||||| |||||| Sbjct 3764 GCGTGGGTTCAAACCCCACTTCTGACA 3738 >seq2688 Length=17748 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 10952 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 11009 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| |||||||| |||||| Sbjct 11010 GCGTGGGTTCAAACCCCACTTCTGACA 11036 >seq617 Length=31802 Score = 86.0 bits (94), Expect = 7e-12 Identities = 78/96 (81%), Gaps = 8/96 (8%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 20811 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGA 20868 Query 126321 --GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| || ||||| ||||| |||||| Sbjct 20869 GGGCGTGGGTTCAAATCCCACTTCTGAC--ATTATT 20902 >seq13744 Length=5398 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 635 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 578 Query 126328 TTCGAACCCCACACCTGACAAATTATTATT 126357 ||| || |||||| ||| || ||| || || Sbjct 577 TTCAAATCCCACAGCTGTCATATTTTTGTT 548 >seq12372 Length=6039 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/80 (84%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | | ||||||| Sbjct 5074 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGCAAGGGCGTGGG 5131 Query 126328 TTCGAACCCCACACCTGACA 126347 ||| || |||||| ||| || Sbjct 5132 TTCAAATCCCACAGCTGTCA 5151 >seq9219 Length=7946 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | Sbjct 1772 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGG 1831 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 1832 GCGTGGGTTCAAATCCCACTTCTGACAA 1859 >seq9189 Length=7963 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/102 (79%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 7303 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 7360 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||| || |||||| ||| | ||| ||| || | ||||| Sbjct 7361 GGGTTCAAATCCCACAGCTGTC-AATCATTTTTACATTTTTT 7401 >seq5857 Length=11269 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 7285 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 7228 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 7227 GCGTGGGTTCAAATCCCACTTCTGACAA 7200 >seq1484 Length=22992 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/83 (83%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | | |||| Sbjct 13717 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGCAAGGGCGT 13774 Query 126325 GGGTTCGAACCCCACACCTGACA 126347 |||||| || |||||| ||| || Sbjct 13775 GGGTTCAAATCCCACAGCTGTCA 13797 >seq1198 Length=25182 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/95 (80%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 9204 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 9145 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| || ||||| ||||||| | ||||| Sbjct 9144 GTGGGTTCAAATCCCACTTCTGACAATTGTTTATT 9110 >seq10721 Length=6962 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/97 (80%), Gaps = 7/97 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||| ||||||||||| | ||| |||||| |||| | | Sbjct 5837 AGTCAGGATGGCCGAGTGGTCCAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 5780 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| |||||||| ||||| | ||| |||| Sbjct 5779 GCGTGGGTTCAAACCCCACTTCTGAC-ACTTAATATT 5744 >seq8482 Length=8516 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/108 (78%), Gaps = 4/108 (4%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 4382 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGCG 4323 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTGC 126371 ||||||| || ||||| |||||| | | || ||| || ||||||| Sbjct 4322 TGGGTTCAAATCCCACTTCTGACACAATTTTGTTG--TTTATTGTTGC 4277 >seq8229 Length=8740 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 4210 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 4267 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| ||| || || Sbjct 4268 TTCAAATCCCACAGCTGTCAACTTTTT 4294 >seq6663 Length=10267 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGT 126328 || |||||||||||||||||||||||||||||| | |||||| || | |||||||| Sbjct 3346 AGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGGT 3289 Query 126329 TCGAACCCCACACCTGACAAAT 126350 || || |||||| ||| ||||| Sbjct 3288 TCAAATCCCACAGCTGTCAAAT 3267 >seq2675 Length=17777 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 14118 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 14175 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| || ||| || Sbjct 14176 TTCAAATCCCACAGCTGTCATATTTTT 14202 >seq2529 Length=18293 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126272 TTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGTTCG 126331 |||||||||||||||||||||||||||||| | |||||| || | |||||||||| Sbjct 11645 TTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGGTTCA 11588 Query 126332 AACCCCACACCTGACAAATTATTA 126355 || |||||| | | |||||| ||| Sbjct 11587 AATCCCACAGCCGTCAAATTTTTA 11564 >seq2246 Length=19240 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 6170 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 6113 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| ||| || || Sbjct 6112 TTCAAATCCCACAGCTGTCAATTTTTT 6086 >seq2052 Length=20031 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 4118 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 4175 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| || ||| Sbjct 4176 TTCAAATCCCACAGCTGTCATATT 4199 >seq1446 Length=23202 Score = 82.4 bits (90), Expect = 8e-11 Identities = 70/85 (82%), Gaps = 6/85 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 12762 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 12705 Query 126321 GCGTGGGTTCGAACCCCACACCTGA 126345 |||||||||| || ||||| |||| Sbjct 12704 GCGTGGGTTCAAATCCCACTTCTGA 12680 >seq633 Length=31432 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | | ||||||| Sbjct 2421 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGCAAGGGCGTGGG 2478 Query 126328 TTCGAACCCCACACCTGACAAA 126349 ||| || ||||| ||| |||| Sbjct 2479 TTCAAATTCCACAGCTGTCAAA 2500 >seq39 Length=59417 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 21365 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 21424 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||| || ||||| |||||||| Sbjct 21425 GTGGGTTCAAATCCCACTTCTGACAAA 21451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556410216083680