Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq11485 91.5 1e-13 seq4867 84.2 2e-11 seq964 82.4 5e-11 >seq11485 Length=6519 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || ||| | || || |||||||||||| | ||| ||| | | Sbjct 4934 ATGCAGATTTTCGTCAAGACACTCACCGGTAAAACCATTACCCTTGAAGTGGAGAGCTCT 4993 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || | || || ||| || || || || | ||| |||| Sbjct 4994 GACACGATCGACAATGTGAAAGCGAAGATTCAGGACAAGGAAGGCATCCCTCCGGACCAG 5053 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||| ||||| ||||| || || ||| ||| |||| |||||||| Sbjct 5054 CAGAGACTCATCTTCGCTGGGAAACAGCTCGAGGATGGTCGGACTTTGGCTGATTACAAC 5113 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || |||||||| ||||||||||| |||| | ||| | || || ||| Sbjct 5114 ATCCAGAAGGAGTCTACTCTTCACTTGGTTCTTCGTCTTCGTGGTGGA 5161 >seq4867 Length=12713 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || |||||||| |||| | | ||||||||||| ||||||||||| ||||||||||| Sbjct 7713 GACAAAGAGGGGATACCACCAGATCAACAGAGACTCATCTTTGCTGGGAAACAACTAGAG 7654 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||| ||| | | || ||||| |||||||| || || |||||||| |||| Sbjct 7653 GATGGTCGAACGCTTTCTGACTACAACATTCAGAAAGAGTCCACTCTTCACTTGGT 7598 >seq964 Length=27231 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || ||||| || |||||| ||||| || | || Sbjct 10405 ATGCAAATCTTTGTGAAGACTCTGACAGGCAAGACTATTACCTTGGAAGTTGAGAGCTCA 10464 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| |||||| || || || || | ||| ||||| Sbjct 10465 GACACAATCGACAATGTGAAGGCTAAAATTCAGGACAAGGAAGGGATCCCTCCGGACCAA 10524 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||| ||||| || || || || ||| || | || || |||||| Sbjct 10525 CAGAGACTCATCTTCGCTGGTAAGCAGCTTGAGGATGGTCGCACGCTTGCTGACTACAAT 10584 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || |||||||| || || ||||| |||| | ||| | || || ||| Sbjct 10585 ATCCAGAAGGAGTCGACGCTTCACTTGGTTCTTCGTCTTCGTGGTGGA 10632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357842267735128