Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq12321 282 8e-71 seq549 269 5e-67 >seq12321 Length=6064 Score = 282 bits (312), Expect = 8e-71 Identities = 455/650 (70%), Gaps = 18/650 (3%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| | |||| ||||||||||||||| | ||||| Sbjct 837 ATCTGGGAGATGTACAAGAAGGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTC 896 Query 42360 GCCAAGGACACGGCCGGCTGGGAG----TCACTGTCTGAGAACGAAAAGTTTTTCCTCAA 42415 || ||||| || ||||||| ||| | | | || || | ||| |||| Sbjct 897 TCCGGCGACACACGCGACTGGGAGAATCTCAACGACGGCGAGCGCCAC----TTCATCAA 952 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 | || | |||||||||||||||||||| ||||| || ||| ||||| || ||| || | Sbjct 953 ACACGTCCTGGCCTTCTTCGCCGCCTCCGACGGGATCGTCCTCGAGAATCTCGCCTCCCG 1012 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 ||||||| || || ||| || |||||||| |||||||||||||||||| || || Sbjct 1013 GTTCATGTCCGACGTCCAGGTCTCCGAGGCGCGTGCCTTCTACGGCTTCCAGATCGCGAT 1072 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT 42595 |||||| | ||||| ||| |||| |||||| |||| |||||| || | Sbjct 1073 TGAGAACATCCACTCAGAGATGTATAGTCTCCTGCTCGACACCTACATCAAAGACAACAA 1132 Query 42596 CGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655 ||| | || || ||| |||||| ||||| || |||||| || ||||||||| | Sbjct 1133 GGAGAGGGACCACCTCTTCCGGGCCATCGAGACCATCCCCTGCGTCGCGAAGAAGGCCCA 1192 Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCA-ACGTTCGGCGAGAGGCTGGTAGCC 42713 ||||| | || |||||||| | || | || || |||| |||||| | || ||| Sbjct 1193 ATGGGCCATGAAGTGGATCGA-----CGGATCTCAGACTTTCGCGGAGAGGATCGTCGCC 1247 Query 42714 TTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG 42773 || || |||||| || ||||||||||| || |||| ||| ||||||||||||||| Sbjct 1248 TTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCGATCTTCTGGCTCAAG 1307 Query 42774 CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGG 42833 || | | ||||| || || |||||||| ||||| |||||| || ||||||||| Sbjct 1308 AAGCGTGGGCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCGAGAGACGAGGGG 1367 Query 42834 CTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAG 42893 || || | || || ||||| |||| ||| | | | ||| |||| | || || Sbjct 1368 CTTCACTGCGATTTCGCCTG---CCTGATCTATACCTTATTGAGGACGAAGCTCCCGGAG 1424 Query 42894 GAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 ||||| || | | ||| | || || ||||||||||||| |||||| Sbjct 1425 GAGCGCGTGAAGTCGATCGTGTGCGACGCGGTGGAGATCGAGAGGGAGTT 1474 >seq549 Length=32968 Score = 269 bits (298), Expect = 5e-67 Identities = 463/670 (69%), Gaps = 23/670 (3%) Strand=Plus/Plus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| | ||| | | |||||| ||||||||||| || | |||| ||||||||| Sbjct 19770 GATCCACTACCCGCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGC 19829 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAG-------TCACTGTCTGAGA 42396 |||||| | ||||| || | ||||| || ||||||| ||| | | | || Sbjct 19830 CGAGGAAGTCGACCTCTCCCAAGACACCCGCGACTGGGAGCAAAACCTCAACGACGGCGA 19889 Query 42397 ACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCA 42456 ||| | ||| ||||| || | || ||||||||||||||||| ||||| || ||| Sbjct 19890 GCGACAC----TTCGTCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATCGTCC 19945 Query 42457 ATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCT 42516 ||||| || ||| || | |||||| || || ||| || ||||| ||| ||||| Sbjct 19946 TCGAGAATCTCGCCTCCCGTTTCATGTCCGACGTCCAGGTCTCCGAGGCCCGCGCCTTCT 20005 Query 42517 ACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA--- 42573 ||||||||||||| || || |||||| | ||||| ||| ||||| | || ||| Sbjct 20006 ACGGCTTCCAGATCGCGATCGAGAACATCCACTCCGAGATGTAC---AGTCTCCTCTTAG 20062 Query 42574 ACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGC 42633 |||| |||||| || | ||| | || || ||| || || |||||||| | Sbjct 20063 ACACTTACATCAAAGACAACAAGGAGAGGGACCATCTCTTCCGCGCGATCGAGACGATCC 20122 Query 42634 CCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGT 42693 | ||| | ||||| ||||| | ||||| | || |||||||| | || | || | Sbjct 20123 CTTGCGTAAAGAAAAAGGCCCAATGGGCCTTGAAGTGGATCGATGGGCCTCAGGCC---T 20179 Query 42694 TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCG 42753 ||| ||||||| | || || || | ||| || || ||||||||||||||| |||| Sbjct 20180 TCGCCGAGAGGATCGTGGCGTTCGCTTGCGTGGAAGGGATCTTCTTCTCGGGCAGCTTCT 20239 Query 42754 CCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813 ||| ||||||||||| ||| || | | ||||| || ||||||||||| ||||| | Sbjct 20240 GCTCGATCTTCTGGCTGAAGAAGCGTGGGCTCATGCCGGGTCTCACCTTCTCCAACGAGC 20299 Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACC 42873 | ||| || ||||| || || || | ||||| || ||||| | | ||| || || Sbjct 20300 TGATCTCGAGAGACGAAGGCCTCCACTGCGACTTCGCGTGCCTGATCTACTC---CCTCC 20356 Query 42874 TCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCG 42933 | ||| |||| |||| ||||||| || || | ||| | || || |||||||||| Sbjct 20357 TTAGGACGAAGCTCTCGGAGGAGCGCGTGAGGTCGATCGTGTGCGACGCGGTGGAGATCG 20416 Query 42934 AGAAGGAGTT 42943 ||| |||||| Sbjct 20417 AGAGGGAGTT 20426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943575087936320