Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq12321 282 8e-71
seq549 269 5e-67
>seq12321
Length=6064
Score = 282 bits (312), Expect = 8e-71
Identities = 455/650 (70%), Gaps = 18/650 (3%)
Strand=Plus/Plus
Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359
|||||| |||||||||||||| | |||| ||||||||||||||| | |||||
Sbjct 837 ATCTGGGAGATGTACAAGAAGGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTC 896
Query 42360 GCCAAGGACACGGCCGGCTGGGAG----TCACTGTCTGAGAACGAAAAGTTTTTCCTCAA 42415
|| ||||| || ||||||| ||| | | | || || | ||| ||||
Sbjct 897 TCCGGCGACACACGCGACTGGGAGAATCTCAACGACGGCGAGCGCCAC----TTCATCAA 952
Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475
| || | |||||||||||||||||||| ||||| || ||| ||||| || ||| || |
Sbjct 953 ACACGTCCTGGCCTTCTTCGCCGCCTCCGACGGGATCGTCCTCGAGAATCTCGCCTCCCG 1012
Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535
||||||| || || ||| || |||||||| |||||||||||||||||| || ||
Sbjct 1013 GTTCATGTCCGACGTCCAGGTCTCCGAGGCGCGTGCCTTCTACGGCTTCCAGATCGCGAT 1072
Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT 42595
|||||| | ||||| ||| |||| |||||| |||| |||||| || |
Sbjct 1073 TGAGAACATCCACTCAGAGATGTATAGTCTCCTGCTCGACACCTACATCAAAGACAACAA 1132
Query 42596 CGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655
||| | || || ||| |||||| ||||| || |||||| || ||||||||| |
Sbjct 1133 GGAGAGGGACCACCTCTTCCGGGCCATCGAGACCATCCCCTGCGTCGCGAAGAAGGCCCA 1192
Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCA-ACGTTCGGCGAGAGGCTGGTAGCC 42713
||||| | || |||||||| | || | || || |||| |||||| | || |||
Sbjct 1193 ATGGGCCATGAAGTGGATCGA-----CGGATCTCAGACTTTCGCGGAGAGGATCGTCGCC 1247
Query 42714 TTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG 42773
|| || |||||| || ||||||||||| || |||| ||| |||||||||||||||
Sbjct 1248 TTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCGATCTTCTGGCTCAAG 1307
Query 42774 CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGG 42833
|| | | ||||| || || |||||||| ||||| |||||| || |||||||||
Sbjct 1308 AAGCGTGGGCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCGAGAGACGAGGGG 1367
Query 42834 CTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAG 42893
|| || | || || ||||| |||| ||| | | | ||| |||| | || ||
Sbjct 1368 CTTCACTGCGATTTCGCCTG---CCTGATCTATACCTTATTGAGGACGAAGCTCCCGGAG 1424
Query 42894 GAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943
||||| || | | ||| | || || ||||||||||||| ||||||
Sbjct 1425 GAGCGCGTGAAGTCGATCGTGTGCGACGCGGTGGAGATCGAGAGGGAGTT 1474
>seq549
Length=32968
Score = 269 bits (298), Expect = 5e-67
Identities = 463/670 (69%), Gaps = 23/670 (3%)
Strand=Plus/Plus
Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343
|||| | ||| | | |||||| ||||||||||| || | |||| |||||||||
Sbjct 19770 GATCCACTACCCGCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGC 19829
Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAG-------TCACTGTCTGAGA 42396
|||||| | ||||| || | ||||| || ||||||| ||| | | | ||
Sbjct 19830 CGAGGAAGTCGACCTCTCCCAAGACACCCGCGACTGGGAGCAAAACCTCAACGACGGCGA 19889
Query 42397 ACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCA 42456
||| | ||| ||||| || | || ||||||||||||||||| ||||| || |||
Sbjct 19890 GCGACAC----TTCGTCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATCGTCC 19945
Query 42457 ATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCT 42516
||||| || ||| || | |||||| || || ||| || ||||| ||| |||||
Sbjct 19946 TCGAGAATCTCGCCTCCCGTTTCATGTCCGACGTCCAGGTCTCCGAGGCCCGCGCCTTCT 20005
Query 42517 ACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA--- 42573
||||||||||||| || || |||||| | ||||| ||| ||||| | || |||
Sbjct 20006 ACGGCTTCCAGATCGCGATCGAGAACATCCACTCCGAGATGTAC---AGTCTCCTCTTAG 20062
Query 42574 ACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGC 42633
|||| |||||| || | ||| | || || ||| || || |||||||| |
Sbjct 20063 ACACTTACATCAAAGACAACAAGGAGAGGGACCATCTCTTCCGCGCGATCGAGACGATCC 20122
Query 42634 CCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGT 42693
| ||| | ||||| ||||| | ||||| | || |||||||| | || | || |
Sbjct 20123 CTTGCGTAAAGAAAAAGGCCCAATGGGCCTTGAAGTGGATCGATGGGCCTCAGGCC---T 20179
Query 42694 TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCG 42753
||| ||||||| | || || || | ||| || || ||||||||||||||| ||||
Sbjct 20180 TCGCCGAGAGGATCGTGGCGTTCGCTTGCGTGGAAGGGATCTTCTTCTCGGGCAGCTTCT 20239
Query 42754 CCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813
||| ||||||||||| ||| || | | ||||| || ||||||||||| ||||| |
Sbjct 20240 GCTCGATCTTCTGGCTGAAGAAGCGTGGGCTCATGCCGGGTCTCACCTTCTCCAACGAGC 20299
Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACC 42873
| ||| || ||||| || || || | ||||| || ||||| | | ||| || ||
Sbjct 20300 TGATCTCGAGAGACGAAGGCCTCCACTGCGACTTCGCGTGCCTGATCTACTC---CCTCC 20356
Query 42874 TCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCG 42933
| ||| |||| |||| ||||||| || || | ||| | || || ||||||||||
Sbjct 20357 TTAGGACGAAGCTCTCGGAGGAGCGCGTGAGGTCGATCGTGTGCGACGCGGTGGAGATCG 20416
Query 42934 AGAAGGAGTT 42943
||| ||||||
Sbjct 20417 AGAGGGAGTT 20426
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 943575087936320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |