Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq2241 104 2e-17 seq2790 96.9 3e-15 seq41676 93.3 4e-14 >seq2241 Length=19256 Score = 104 bits (114), Expect = 2e-17 Identities = 217/321 (68%), Gaps = 2/321 (1%) Strand=Plus/Plus Query 20197 GTGGGCATCTCCCAACGTG-TGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAA 20255 ||| ||||| ||||| | || ||||| || || || ||| || |||||||| | Sbjct 1776 GTGAGCATC-CCCAATGACATGGATAAAATCACCAGGAACGAGATCACACACATGAGCTA 1834 Query 20256 GCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTC 20315 |||| |||| | || || ||| ||||||||||| || || || | ||||| || Sbjct 1835 GCATGCAAGTCAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCCCATATCCG 1894 Query 20316 CCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACA 20375 | || | |||||||| |||||| || ||||| || || || || || || || |||| Sbjct 1895 CTGAACGCTGATACATCTGACACGAGAGCTCCCCTTCCGCCACGTAGAACTGTGCAAACA 1954 Query 20376 AGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGA 20435 ||| || || ||||||||||||| | | || | |||||||| || | | |||| Sbjct 1955 TGTGGCACGGAGGAAGCGCCATCAGCTTGAGATCAGAAGGGTTCCAAGCCGATAATATGA 2014 Query 20436 TTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCAAACC 20495 | | | ||| | ||||| || || || || | | | | | || ||||| | Sbjct 2015 TACGCCGATCATCAGGATTGTTCTTGATCTTGTCGATTACATCTGCGAGCTGATCAAATC 2074 Query 20496 CCTGGCCTGTATAGTCAGCAT 20516 | ||||| ||||| ||||||| Sbjct 2075 CTTGGCCAGTATAATCAGCAT 2095 >seq2790 Length=17423 Score = 96.9 bits (106), Expect = 3e-15 Identities = 188/278 (68%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298 |||| ||| ||||| || || | || | ||||| || |||||||||||||| || Sbjct 3607 ACCACAAACGTGAGCTAGAATGCATGTAAGAAGGGAGTAAGAAGCAATGTTAAAAGGTAC 3666 Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358 || | |||||| || | || | |||||||| ||||| || ||||| || | || || Sbjct 3667 ACCAAGACCCATATCAGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCATTTGCAAC 3726 Query 20359 ATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTT 20418 || || ||| |||| ||| || || ||||||||||||| | | ||| | || || Sbjct 3727 GTAGAACTGAGCAAACATGTGGCATGGAGGAAGCGCCATCAGCTTAAGGTCAGAAGGATT 3786 Query 20419 CCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTA 20478 ||| || |||| || || | | ||||| || || || || || | | | || Sbjct 3787 CCAAGCCGACATTATAATCCGCCGATCGTCAGGGTTGTTCTTGATCTTGTTGATTACGTC 3846 Query 20479 CGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 | | || ||||| || ||||| || || ||||||| Sbjct 3847 TAAAAGCTGATCAAATCCTTGGCCGGTGTAATCAGCAT 3884 >seq41676 Length=800 Score = 93.3 bits (102), Expect = 4e-14 Identities = 186/272 (68%), Gaps = 8/272 (3%) Strand=Plus/Plus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 |||||||| || || | || | || || || ||||||||||| || || || | | Sbjct 533 ACATGAGCGAGGATGCATGTAAGAAGTGAGTATGAAGCAATGTTAAACGGTACACCAAGA 592 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 | || || | || | |||||||| ||||| |||| ||| || | || |||||||| Sbjct 593 CTGATATCAGCTGAGCACTGATACATTTGACACGAAAACTCTCCATTTGCAACATAAAAC 652 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 ||| |||| ||| || || ||||| ||||||| | | ||| | || ||||| || Sbjct 653 TGAGGAAACATGTGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGCT 712 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAATGTACGA 20481 |||| || || | | ||| | ||||| ||||| || | || | || || || | Sbjct 713 GACATTATTATCCGGCGATCATCAGGATTGTTTTTGATCTTGTTAA-CTAC-ATCTA--A 768 Query 20482 CAATTGGTCAAACCCCTGGCCTGTATAGTCAG 20513 | || |||||||| ||||| ||||| |||| Sbjct 769 GAGCTGATCAAACCCTTGGCCAGTATAATCAG 800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441015663198880