Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq2241 104 2e-17
seq2790 96.9 3e-15
seq41676 93.3 4e-14
>seq2241
Length=19256
Score = 104 bits (114), Expect = 2e-17
Identities = 217/321 (68%), Gaps = 2/321 (1%)
Strand=Plus/Plus
Query 20197 GTGGGCATCTCCCAACGTG-TGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAA 20255
||| ||||| ||||| | || ||||| || || || ||| || |||||||| |
Sbjct 1776 GTGAGCATC-CCCAATGACATGGATAAAATCACCAGGAACGAGATCACACACATGAGCTA 1834
Query 20256 GCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTC 20315
|||| |||| | || || ||| ||||||||||| || || || | ||||| ||
Sbjct 1835 GCATGCAAGTCAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCCCATATCCG 1894
Query 20316 CCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACA 20375
| || | |||||||| |||||| || ||||| || || || || || || || ||||
Sbjct 1895 CTGAACGCTGATACATCTGACACGAGAGCTCCCCTTCCGCCACGTAGAACTGTGCAAACA 1954
Query 20376 AGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGA 20435
||| || || ||||||||||||| | | || | |||||||| || | | ||||
Sbjct 1955 TGTGGCACGGAGGAAGCGCCATCAGCTTGAGATCAGAAGGGTTCCAAGCCGATAATATGA 2014
Query 20436 TTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCAAACC 20495
| | | ||| | ||||| || || || || | | | | | || ||||| |
Sbjct 2015 TACGCCGATCATCAGGATTGTTCTTGATCTTGTCGATTACATCTGCGAGCTGATCAAATC 2074
Query 20496 CCTGGCCTGTATAGTCAGCAT 20516
| ||||| ||||| |||||||
Sbjct 2075 CTTGGCCAGTATAATCAGCAT 2095
>seq2790
Length=17423
Score = 96.9 bits (106), Expect = 3e-15
Identities = 188/278 (68%), Gaps = 0/278 (0%)
Strand=Plus/Plus
Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298
|||| ||| ||||| || || | || | ||||| || |||||||||||||| ||
Sbjct 3607 ACCACAAACGTGAGCTAGAATGCATGTAAGAAGGGAGTAAGAAGCAATGTTAAAAGGTAC 3666
Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358
|| | |||||| || | || | |||||||| ||||| || ||||| || | || ||
Sbjct 3667 ACCAAGACCCATATCAGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCATTTGCAAC 3726
Query 20359 ATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTT 20418
|| || ||| |||| ||| || || ||||||||||||| | | ||| | || ||
Sbjct 3727 GTAGAACTGAGCAAACATGTGGCATGGAGGAAGCGCCATCAGCTTAAGGTCAGAAGGATT 3786
Query 20419 CCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTA 20478
||| || |||| || || | | ||||| || || || || || | | | ||
Sbjct 3787 CCAAGCCGACATTATAATCCGCCGATCGTCAGGGTTGTTCTTGATCTTGTTGATTACGTC 3846
Query 20479 CGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516
| | || ||||| || ||||| || || |||||||
Sbjct 3847 TAAAAGCTGATCAAATCCTTGGCCGGTGTAATCAGCAT 3884
>seq41676
Length=800
Score = 93.3 bits (102), Expect = 4e-14
Identities = 186/272 (68%), Gaps = 8/272 (3%)
Strand=Plus/Plus
Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305
|||||||| || || | || | || || || ||||||||||| || || || | |
Sbjct 533 ACATGAGCGAGGATGCATGTAAGAAGTGAGTATGAAGCAATGTTAAACGGTACACCAAGA 592
Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365
| || || | || | |||||||| ||||| |||| ||| || | || ||||||||
Sbjct 593 CTGATATCAGCTGAGCACTGATACATTTGACACGAAAACTCTCCATTTGCAACATAAAAC 652
Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425
||| |||| ||| || || ||||| ||||||| | | ||| | || ||||| ||
Sbjct 653 TGAGGAAACATGTGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGCT 712
Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAATGTACGA 20481
|||| || || | | ||| | ||||| ||||| || | || | || || || |
Sbjct 713 GACATTATTATCCGGCGATCATCAGGATTGTTTTTGATCTTGTTAA-CTAC-ATCTA--A 768
Query 20482 CAATTGGTCAAACCCCTGGCCTGTATAGTCAG 20513
| || |||||||| ||||| ||||| ||||
Sbjct 769 GAGCTGATCAAACCCTTGGCCAGTATAATCAG 800
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441015663198880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |