Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq4396 152 1e-31 seq3667 152 1e-31 seq806 152 1e-31 seq1045 143 6e-29 seq11485 136 9e-27 seq12662 134 3e-26 seq37186 132 1e-25 seq1703 132 1e-25 seq25552 127 5e-24 seq24793 127 5e-24 seq14782 122 2e-22 seq3737 118 2e-21 seq7912 116 9e-21 seq964 114 3e-20 seq7348 113 1e-19 seq20570 109 1e-18 seq12321 91.5 3e-13 seq23940 84.2 5e-11 seq6096 84.2 5e-11 >seq4396 Length=13502 Score = 152 bits (168), Expect = 1e-31 Identities = 175/233 (75%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || || || ||||||| || ||||||||||| || ||||| ||| Sbjct 12057 CCACCACGGAGCCTGAGGACAAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCAGCG 11998 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | ||| || || |||||||| || | ||| ||| || ||| Sbjct 11997 AGAGTACGCCCATCTTCAAGTTGCTTCCCGGCGAAGATAAGCCTCTGCTGA---TCCGGG 11941 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || ||||| || ||||| || || ||||| ||||| || || | || ||| | Sbjct 11940 GGAATGCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTGTCGATGGTGTCTGAGCT---T 11884 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||||||||| ||||| |||||||| |||||||||||||| Sbjct 11883 TCCACCTCGAGGGTGATCGTCTTTCCGGTGAGAGTCTTAACGAATATCTGCAT 11831 Score = 125 bits (138), Expect = 2e-23 Identities = 148/198 (75%), Gaps = 12/198 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||| ||||| || | ||||| || | || ||||| |||||| Sbjct 520 TCCTTCTGGATATTGTAGTCAGCGAGAGTCCTGCCGTCCTCGAGCTGCTTTCCAGCGAAG 461 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| || ||||| ||| ||||| ||||| ||||| || ||||||||| Sbjct 460 ATGAGACGCTGCTGG---TCTGGAGGGATCCCTTCCTTATCTTGGATCTTGGCTTTCACG 404 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | || |||| || || || || ||||| ||||| || |||| ||| Sbjct 403 TTATCAATCGTGTCCGAGCTC---TCCACCTCCAGTGTGATGGTCTTACCAGTCAAGGTC 347 Query 288457 TTGACGAATATCTGCATT 288474 |||||||| || |||||| Sbjct 346 TTGACGAAGATTTGCATT 329 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || || || || | ||||| || || || | || || || |||||| Sbjct 12681 TCTTTCTGAATGTTGTAATCAGCCAAGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAG 12622 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || |||||| || || || ||||| || || || || ||||| Sbjct 12621 ATGAGACGCTGCTGGTCCGGTGGGATCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG 12562 Query 288403 TCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | ||| ||| || || || | ||||| |||||||||||||| ||||| Sbjct 12561 TCAATGGTGTCGGAGCTC---TCCACCTCCAAAGTGATAGTCTTCCCGGTCAGTGTCTTA 12505 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 12504 ACAAAAATCTGCAT 12491 >seq3667 Length=14967 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || ||||| || | || || || ||||| || ||||||||| Sbjct 5495 CCACCGCGGAGACGGAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCG 5554 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | ||||| || ||||||||||| ||||| || ||| Sbjct 5555 AGGGTGCGCCCGTCCTCGAGCTGTTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGAGGG 5614 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| || ||||| || || || || | ||| ||||| || Sbjct 5615 ATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGATTCGACC 5674 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| |||||||||||||| || || || || ||||| |||||||| Sbjct 5675 TCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 5721 >seq806 Length=29032 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || |||||||||| ||| || || ||||| || ||||||||| Sbjct 17950 CCACCACGGAGACGGAGGACGAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 18009 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| | || || || ||||||||||| ||||| || ||| Sbjct 18010 AGTGTGCGGCCGTCTTCGAGCTGCTTCCCGGCGAAGATCAGTCGCTGCTGGTCCGGCGGG 18069 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| || || || ||||| || || | ||| || || || Sbjct 18070 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGACTCGACC 18129 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||||||||| || || || || ||||| |||||||| Sbjct 18130 TCGAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 18176 >seq1045 Length=26565 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || ||||| || | || || || ||||| || ||||||||| Sbjct 2792 CCACCGCGGAGACGGAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCG 2851 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | ||||| || ||||||||||| ||||| || ||| Sbjct 2852 AGGGTGCGCCCGTCCTCGAGCTGTTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGAGGG 2911 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| || || || ||||| || || | ||| || || || Sbjct 2912 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGACTCGACC 2971 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| || || || || ||||| |||||||| Sbjct 2972 TCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 3018 >seq11485 Length=6519 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | |||||||||||| | || || || ||||| || || ||||| Sbjct 4704 CCACCACGGAGACGAAGTACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAATCGGCC 4645 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||||||||||| || || || |||||||| || | ||| || ||| Sbjct 4644 AGGGTGCGTCCGTCTTCTAGCTGCTTCCCAGCGAAGATGAGCCTCTGCTGGTCGGGAGGG 4585 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| || |||||||| || || || || || ||||||| || |||| || Sbjct 4584 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCTATAGTGTCGGAGCTC---TCG 4528 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| ||||| || || || ||||| || ||||| Sbjct 4527 ACCTCGAGAGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATTTGCAT 4478 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || |||||||||| ||| || || || ||||| || || || Sbjct 4932 CCACCACGGAGACGGAGGACGAGATGAAGCGTAGACTCCTTCTGAATATTGTAATCCGCA 4873 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||||||||| || || | ||||| || |||||||| || | ||| || || Sbjct 4872 AGCGTGCGTCCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGA 4813 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 |||||||| || |||||||| || |||||||| || || |||| || |||| || Sbjct 4812 ATTCCTTCCTTGTCCTGGATCTTTGCTTTCACATTGTCAATAGTGTCGGAGCTC---TCA 4756 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||| || |||| ||||||||| || |||||||| Sbjct 4755 ACCTCCAAAGTGATGGTCTTGCCTGTCAAAGTCTTGACAAAAATCTGCAT 4706 Score = 98.7 bits (108), Expect = 2e-15 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | ||| || | |||| || || || ||||| || || || || Sbjct 5161 TCCACCACGAAGACGAAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGC 5102 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || || || || | ||||| || |||||||| || | ||| || || Sbjct 5101 CAAAGTCCGACCATCCTCGAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGG 5042 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTC 288422 ||| ||||| || ||||| || ||||||||||| || || || | || |||| || Sbjct 5041 GATGCCTTCCTTGTCCTGAATCTTCGCTTTCACATTGTCGATCGTGTCAGAGCTC---TC 4985 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || || || ||||| || ||||||||||| |||||||| Sbjct 4984 CACTTCAAGGGTAATGGTTTTACCGGTGAGTGTCTTGACGAAAATCTGCAT 4934 >seq12662 Length=5898 Score = 134 bits (148), Expect = 3e-26 Identities = 171/233 (73%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | | || | ||||| || || || ||||| || |||||||| Sbjct 3943 CCACCACGGAGACGCAACACCAAGTGAATGGTTGACTCCTTCTGGATGTTGTAGTCGGCA 3884 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || ||||| || || || | || ||||| |||||||| |||||||| || ||||| Sbjct 3883 AGGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGG---TCTGGA 3827 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 ||| ||||| ||||| ||||| || ||||||||||| || || | || |||| Sbjct 3826 GGGATGCCTTCCTTATCTTGGATCTTGGCTTTCACGTTATCAATCGTGTCCGAGCTC--- 3770 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| ||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 3769 TCAACTTCGAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 3717 Score = 118 bits (130), Expect = 2e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || || |||||||| | || || || ||||| || ||||| ||| Sbjct 3715 CCACCACGGAGCCTGAGAACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCG 3656 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | |||||||| | || || ||||||||||||| | ||| || |||| Sbjct 3655 AGAGTTCTGCCGTCTTCAAGCTGCTTGCCTGCGAAGATCAACCTCTGCTGGTCCGGTGGG 3596 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || || || || || ||||| || ||||| ||||| || || | || |||| || Sbjct 3595 ATCCCCTCCTTGTCTTGGATCTTTGCTTTGACGTTGTCGATGGTGTCGGAGCTC---TCC 3539 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || |||||||| || |||| ||||| ||||| |||||||| Sbjct 3538 ACCTCTAGGGTAATCGTCTTTCCCGTCAAGGTCTTAACGAAGATCTGCAT 3489 >seq37186 Length=985 Score = 132 bits (146), Expect = 1e-25 Identities = 167/228 (73%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTT-TCTTTTTGGATATTATAGTCGGC 288305 ||||| ||||| || || || ||||||| | | ||||||||||| || ||||| || Sbjct 439 CCACCACGGAGCCTGAGGACAAGATGAAGAGGTCGACTCTTTTTGGATGTTGTAGTCAGC 498 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || | ||||| || || ||||| || |||||||| || | ||| ||| || Sbjct 499 CAATGTTCTGCCGTCCTCCAACTGTTTCCCGGCGAAGATAAGCCTCTGCTGATCGGGAGG 558 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || ||||| ||||| || || ||||| ||||| || || | ||| ||| || Sbjct 559 GATACCCTCTTTGTCCTGAATCTTGGCTTTAACGTTGTCGATGGTGTCGGAGCTTTCCAC 618 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| |||||||||||||| || |||||||| ||||| || ||||| Sbjct 619 CTCGAGGGTGATCGTCTTCCCAGTGAGAGTCTTAACGAAGATTTGCAT 666 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || || |||||||| | || || |||||||| || ||||| ||| Sbjct 211 CCACCACGGAGCCTGAGAACGAGATGCAAAGTTGACTCCTTTTGGATGTTGTAGTCAGCG 270 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| | || | || || || || ||||||| | ||| || |||| Sbjct 271 AGAGTCCTGCCGACCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGG 330 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 ||||| || || ||||| || || || || || || || || | || |||| || Sbjct 331 ATTCCCTCCTTGTCCTGAATCTTAGCCTTGACATTATCGATGGTGTCCGAGCTC---TCC 387 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 388 ACCTCGAGAGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATCTGCAT 437 >seq1703 Length=21771 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | |||| || || || |||||||| ||||| || Sbjct 17912 CCACCACGGAGACGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAGTCTGCC 17971 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || || || | || ||||| |||||||| |||||||| ||| ||| Sbjct 17972 AAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGG 18031 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| || |||||||| || || |||||||| || |||| || |||| || Sbjct 18032 ATACCTTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATAGTGTCAGAGCTC---TCA 18088 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||||||||| ||||||||||| || |||||||| Sbjct 18089 ACCTCCAATGTGATAGTCTTCCCGGTAAGAGTCTTGACAAAGATCTGCAT 18138 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| || ||||| | ||||| || || || | || ||||| |||||| Sbjct 18860 TCCTTCTGGATATTGTAATCGGCCAAGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAG 18919 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| ||| ||||| ||||| || |||||||| || ||||||||||| Sbjct 18920 ATGAGACGCTGCTGATCCGGAGGGATCCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTG 18979 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||| || ||||| ||||| ||||||||||| ||||| || ||| Sbjct 18980 TCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGATTGTCTTCCCGGTGAGAGTTTTCACG 19039 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 19040 AAGATTTGCAT 19050 Score = 118 bits (130), Expect = 2e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || || || |||||||| | || || || || |||||||| || || Sbjct 18596 CCACCACGAAGCCTGAGAACGAGATGCAGAGTCGACTCCTTCTGTATATTATAATCAGCA 18655 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || || || || || ||||| || |||||||| | ||| ||| ||| Sbjct 18656 AGAGTCCTCCCATCCTCCAACTGCTTTCCCGCAAAGATCAGCCTCTGCTGATCCGGAGGG 18715 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| ||||| || || || || || ||||| || || | ||| |||| || Sbjct 18716 ATCCCTTCCTTATCTTGTATCTTAGCCTTGACGTTGTCGATTGTATCAGAGCTC---TCC 18772 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||| ||||| |||||||||||||| |||||||| Sbjct 18773 ACCTCCAAAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 18822 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || || || || | ||||| || || || | || || || ||||| Sbjct 18176 TCTTTCTGAATGTTGTAATCAGCCAAGGTGCGACCATCCTCGAGCTGCTTCCCAGCGAAT 18235 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || ||||| || ||||| || |||||||||||||||||||| Sbjct 18236 ATCAGCCTCTGCTGGTCCGGAGGGATACCCTCTTTGTCTTGGATTTTCGCTTTCACGTTG 18295 Query 288403 TCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | ||| ||| || || || | ||||||||||| || |||| ||||| Sbjct 18296 TCAATGGTGTCGGAACTC---TCCACCTCTAAAGTGATCGTCTTTCCTGTCAACGTCTTA 18352 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 18353 ACGAAGATCTGCAT 18366 >seq25552 Length=2169 Score = 127 bits (140), Expect = 5e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| ||||| || ||||| || | || || || ||||| | ||||| || ||||||| Sbjct 434 CTTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTACCGGCGAAGA 375 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 |||||||||| ||| ||||| |||||||| || ||||| || ||||| || || | Sbjct 374 TCAGACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTGT 315 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | || | ||| || || |||||||| ||||| ||||| || || || || || |||| Sbjct 314 CGATGGTGTCGGAGGACTCGACTTCGAGAGTGATGGTCTTGCCCGTTAGGGTTTTCACGA 255 Query 288464 ATATCTGCAT 288473 | |||||||| Sbjct 254 AGATCTGCAT 245 >seq24793 Length=2311 Score = 127 bits (140), Expect = 5e-24 Identities = 148/197 (75%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||| ||||| || || || || || | || ||||| |||||| Sbjct 1195 TCCTTCTGGATATTGTAGTCAGCGAGAGTCCGACCATCCTCGAGCTGCTTTCCAGCGAAG 1254 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| || ||||| ||| ||||| ||||| ||||| || ||||||||| Sbjct 1255 ATGAGACGCTGCTGG---TCTGGAGGGATCCCTTCCTTATCTTGGATCTTGGCTTTCACG 1311 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | || |||| || |||||||| ||||| ||||| || |||| ||| Sbjct 1312 TTATCAATCGTGTCCGAGCTC---TCAACTTCGAGGGTGATGGTCTTACCAGTCAAGGTC 1368 Query 288457 TTGACGAATATCTGCAT 288473 || || || |||||||| Sbjct 1369 TTCACAAAGATCTGCAT 1385 >seq14782 Length=4961 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || ||||| || | ||||||||| | || || || |||||| Sbjct 2005 TCCTTCTGGATGTTGTAATCCGCGAGGGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAG 2064 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || |||||| ||||| || ||||| || || || || || || Sbjct 2065 ATCAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCCTGAATCTTGGCCTTGACATTG 2124 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||||| || || || || ||||||||||| || || || || ||| Sbjct 2125 TCGATCGTGTCGGATGATTCGACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACG 2184 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 2185 AAGATCTGCATT 2196 >seq3737 Length=14779 Score = 118 bits (130), Expect = 2e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| ||||| || || || || || || | || ||||| | || || || ||||||| Sbjct 9320 CTTTGTGGATGTTGTAATCAGCAAGAGTCCTGCCATCTTCGAGCTGCTTACCGGCGAAGA 9379 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 ||| | ||| ||| ||||| ||||| ||||| ||||| || ||| | ||||| | Sbjct 9380 TCAACCTCTGCTGATCGGGAGGGATACCTTCCTTATCGTGGATCTTGGCTGTAACGTTGT 9439 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | || | ||| ||| || ||||| ||||||||||| ||||| |||||||| |||| Sbjct 9440 CGATCGTGTCGGAGCTTTCAACCTCGAGGGTGATCGTCTTTCCGGTAAGAGTCTTAACGA 9499 Query 288464 ATATCTGCAT 288473 |||||||||| Sbjct 9500 ATATCTGCAT 9509 >seq7912 Length=9007 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||||||||| |||||||| | ||||| || || || | || || || |||||| Sbjct 6144 TCCTTTTGGATATTGTAGTCGGCTAAGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAG 6203 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || ||||| ||||| ||||||||||| || || || || || Sbjct 6204 ATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTATCCTGGATCTTGGCCTTGACATTG 6263 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | || |||| || || || | |||||| ||||| ||||| || |||||| Sbjct 6264 TCAATGGTGTCAGAGCTC---TCCACCTCCAACGTGATGGTCTTGCCGGTAAGTGTCTTG 6320 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 6321 ACAAAGATCTGCAT 6334 >seq964 Length=27231 Score = 114 bits (126), Expect = 3e-20 Identities = 168/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | ||||| ||| || ||||| | ||| ||||| || || || |||| Sbjct 10179 CATG-CCACCTCTGAGTCGAAGCACAAGATGCAGCGTAGACTCTTTCTGAATGTTGTAGT 10121 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || ||||||||||| || || | || || || || ||||| || | ||| || Sbjct 10120 CAGCTAGCGTGCGTCCATCCTCCAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCCG 10061 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCG 288418 |||||| || |||||||||||||| || || || ||||| || || | || |||| Sbjct 10060 GTGGGATACCCTCTTTATCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTC- 10002 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | ||||| || || ||||| || |||||||| || || ||||| Sbjct 10001 --TCAACCTCCAAAGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCAT 9949 Score = 113 bits (124), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 288245 GTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGG 288304 ||||||| || || | ||| || | |||| ||| || || |||||||| ||||| | Sbjct 10633 GTCCACCACGAAGACGAAGAACCAAGTGAAGCGTCGACTCCTTCTGGATATTGTAGTCAG 10574 Query 288305 CGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTG 288364 | |||||||| || || || | || || || |||||||| || | |||||| | Sbjct 10573 CAAGCGTGCGACCATCCTCAAGCTGCTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAG 10514 Query 288365 GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATT 288421 |||| ||||| || ||||| ||||| || ||||| || || || | || |||| | Sbjct 10513 GGATCCCTTCCTTGTCCTGAATTTTAGCCTTCACATTGTCGATTGTGTCTGAGCTC---T 10457 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| | || || ||||| || ||||||||||| || || || ||||| Sbjct 10456 CAACTTCCAAGGTAATAGTCTTGCCTGTCAGAGTCTTCACAAAGATTTGCAT 10405 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | | || || |||| ||| || || ||||| || ||||| ||| Sbjct 9947 CCACCACGAAGACGCAAGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCAGCG 9888 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || || || || || | ||| ||| ||| Sbjct 9887 AGCGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGCCTCTGCTGATCCGGAGGG 9828 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCT 288423 || || || || |||||||| ||||| || || || || |||| ||| ||| || Sbjct 9827 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATAGTGTCGGAGCTC---TCA 9771 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || |||| |||||||||||| |||||||| Sbjct 9770 ACCTCCAGAGTGATGGTCTTTCCCGTCAAAGTCTTGACGAAGATCTGCAT 9721 >seq7348 Length=9517 Score = 113 bits (124), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| || | ||||| || || || | || ||||| |||||| Sbjct 415 TCCTTCTGGATGTTGTAGTCTGCTAAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAG 356 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| ||| ||||| ||||| || |||||||| || || || ||||| Sbjct 355 ATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTG 296 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | || |||| || || || || ||||| ||||| || |||| ||||| Sbjct 295 TCAATGGTGTCAGAGCTC---TCCACCTCAAGTGTGATGGTCTTACCAGTCAAGGTCTTC 239 Query 288460 ACGAATATCTGCAT 288473 |||||||||||||| Sbjct 238 ACGAATATCTGCAT 225 >seq20570 Length=3172 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || || || |||||||| | || || || ||||| || ||||| || Sbjct 64 CCTCCACGAAGCCTGAGGACGAGATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCAGCA 123 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| || || | ||| || || || ||||||| | ||| || | |||| Sbjct 124 AGAGTCCTTCCATCCTCGAGTTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGTGGG 183 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || || || ||||||||||| || || || ||||| || |||| || |||| || Sbjct 184 ATCCCCTCCTTATCCTGGATCTTAGCCTTAACGTTGTCAATAGTGTCGGAGCTC---TCC 240 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||| ||||||| |||||||| || |||||||| Sbjct 241 ACCTCCAAAGTGATTGTCTTTCCGGTCAATGTCTTGACAAAGATCTGCAT 290 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| || | || | ||||| || || || |||||||||||| Sbjct 328 TCCTTCTGGATGTTGTAGTCAGCCAAGGTTCTCCCGTCCTCCAACTGCTTTCCTGCGAAG 387 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| ||| || || ||||| || |||||||| || || || ||||| Sbjct 388 ATAAGCCTCTGCTGATCCGGAGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTG 447 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | || ||| ||| || ||||| ||||| ||||| || || ||||| || Sbjct 448 TCGATGGTGTCAGAGCT---TTCCACCTCGAGGGTGATTGTCTTTCCTGTGAGAGTTTTC 504 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 505 ACGAAGATCTGCAT 518 >seq12321 Length=6064 Score = 91.5 bits (100), Expect = 3e-13 Identities = 123/169 (73%), Gaps = 7/169 (4%) Strand=Plus/Plus Query 268486 TGGAACATGTACAAGAAGGCAGTGGCAACCTTTTGGACCACCGAGGAAGTT--CCTCTTA 268543 ||| | |||||||||||||| | || |||| |||||| |||||||||| ||||| Sbjct 840 TGGGAGATGTACAAGAAGGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTCTC- 898 Query 268544 ACGCAGACGTTGCAGACTGGCGTGAGAAACTGAACAACGATGAACGACACTTCATCAAAC 268603 || ||| |||||| ||||| || ||| ||| || || ||||||||||||| Sbjct 899 -CGGCGACACACGCGACTGG---GAGAATCTCAACGACGGCGAGCGCCACTTCATCAAAC 954 Query 268604 ATATTCTGGGGTTCTTTGCAGGCTCCGACGGTATCGTGATGGAAAATCT 268652 | | |||| ||||| || | ||||||||| ||||| | || ||||| Sbjct 955 ACGTCCTGGCCTTCTTCGCCGCCTCCGACGGGATCGTCCTCGAGAATCT 1003 >seq23940 Length=2465 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || || |||| ||| || || ||||| || ||||||||||| ||||||||||| Sbjct 2316 AGAACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCC 2375 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || ||||| ||||| || || ||||| || ||||| ||||| || || Sbjct 2376 TCGAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCT 2435 Query 288382 TGGATTTTCGCTTTCACGTTTTCTAT 288407 ||||| || || || ||||| || || Sbjct 2436 TGGATCTTGGCCTTGACGTTGTCGAT 2461 >seq6096 Length=10951 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || || |||| ||| || || ||||| || ||||||||||| ||||||||||| Sbjct 10790 AGAACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCC 10849 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || ||||| ||||| || || ||||| || ||||| ||||| || || Sbjct 10850 TCGAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCT 10909 Query 288382 TGGATTTTCGCTTTCACGTTTTCTAT 288407 ||||| || || || ||||| || || Sbjct 10910 TGGATCTTGGCCTTGACGTTGTCGAT 10935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178676019708296