Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq12321 141 2e-28 >seq12321 Length=6064 Score = 141 bits (156), Expect = 2e-28 Identities = 568/882 (64%), Gaps = 27/882 (3%) Strand=Plus/Plus Query 242869 TCTGCAT--TCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAA 242926 ||||||| |||| ||||| || || | || ||||| ||||| |||||||| | || Sbjct 808 TCTGCATGTTCCCAATCCAATACCCACAGATCTGGGAGATGTACAAGAAGGCCGAAGCCT 867 Query 242927 CCTTTTGGACCACCGAGGAAGTT--CCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAA 242984 |||| |||||| |||||||||| ||||| || ||| ||||||| ||||| Sbjct 868 CCTTCTGGACCGCCGAGGAAGTCGACCTCTC--CGGCGACACACGCGACTGG---GAGAA 922 Query 242985 ACTCAATGACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGA 243044 ||||| |||| ||| || || |||||||||||| | || | || ||||| | |||||| Sbjct 923 TCTCAACGACGGCGAGCGCCACTTCATCAAACACGTCCTGGCCTTCTTCGCCGCCTCCGA 982 Query 243045 TGGTATTGTGATGGAAAATCTGCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAGG 243103 || || || | || ||||| || || | ||| || || ||| | |||| Sbjct 983 CGGGATCGTCCTCGAGAATCTCGCCTCCCGGTTCA-TGTCCGACGTCCAGGTCTCCGAGG 1041 Query 243104 CACGGCAATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATAT 243159 | || || || | | ||| | ||| | ||| ||||| || || ||| Sbjct 1042 CGCGTGCCTTCTACGGCTTCCAGATCGCGATTGA--GAA--CATCCACTCAGAGATGTAT 1097 Query 243160 GCTCTTCTTATCGACGCGCTTATTTCAGATGAACAA-GAGCGAAACGAGCTTTTCGACGC 243218 ||| || ||||| | || ||| ||||| ||| | || | || ||| || Sbjct 1098 AGTCTCCTGCTCGACACCTACATCAAAGA-CAACAAGGAGAGGGACCACCTCTTCCGGGC 1156 Query 243219 CATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACC 243278 |||||| | ||| || || || ||||| ||||||| ||||||| | || Sbjct 1157 CATCGAGACCATCCCCTGCGTCGCGAAGAAGGCCCAATGGGCCATGAAGTGGATCGA--- 1213 Query 243279 CGG---TAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTT 243335 ||| | | | || || ||| | ||||||||| | ||||| ||||| || | || Sbjct 1214 CGGATCTCAGACTTTCGCGGAGAGGATCGTCGCCTTCGCCTGCGTCGAAGGGATCTTCTT 1273 Query 243336 TTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGG 243395 ||||| || |||||| | ||||| ||||| ||| || | |||||||| || Sbjct 1274 CTCCGGAAGCTTCTGCTCGATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCTGGTCTGAC 1333 Query 243396 TCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTAT 243455 | || |||||| ||||| | |||||||| |||||| | |||| || || Sbjct 1334 CTTCTCCAACGAGCTCATCTCGAGAGACGAGGGGCTTCACTGCGATTTCGCCTGCCTGAT 1393 Query 243456 GTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGC 243515 ||| | | || ||||| || || || || ||| | || || Sbjct 1394 CTATACCTTATTGAGGACGAAGCTCCCGGAGGAGCGCGTGAAGTCGATCGTGTGCGACGC 1453 Query 243516 AGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAA 243575 || || | ||| | ||| || | |||||||| |||| ||| | | | || ||||| Sbjct 1454 GGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTGGGGATGAA 1513 Query 243576 CTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGG 243635 ||| || ||| | ||||| ||||| || || || || | |||| ||||||||| Sbjct 1514 TCGTGATCTGATGAGTCAGTATATCGAGTTTGTGGCGGATAGGCTTTTGGGCGCGCTTGG 1573 Query 243636 TTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCA 243695 || | ||| |||||| ||| || |||| | |||||| | || |||||||| Sbjct 1574 GTACGGGAAGGTGTACGGTGTGGCGAATCCGTTTGATTGGATGGAGTTGATCTCGCTTCA 1633 Query 243696 AGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||| || |||||||| || ||| | || ||||||| || Sbjct 1634 GGGGAAGACCAACTTCTTTGAGAAGAGGGTTGGTGATTACCA 1675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101965294764200