Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq549 129 7e-25
seq12321 125 9e-24
seq13279 89.7 6e-13
>seq549
Length=32968
Score = 129 bits (142), Expect = 7e-25
Identities = 195/275 (71%), Gaps = 7/275 (3%)
Strand=Plus/Minus
Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117
|||||| || ||||| | ||||| || || || |||||| || || |||||||| ||
Sbjct 20325 GTGGAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGCCC 20266
Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177
|||||||||| |||||| |||| || || |||||||||||||| || ||||| ||
Sbjct 20265 ACGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTGCCCGAGAAGAAGATCCCTTCCACGCA 20206
Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237
|||||||| | || | ||| || |||| | | | || | |||||||| ||
Sbjct 20205 AGCGAACGCCACGATCCTCTCGGCGAAGGCCTGAGGC---CCATCGATCCACTTCAAGGC 20149
Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 126297
||| || |||||||||| | || |||| |||| |||||| ||||| | | | |
Sbjct 20148 CCATTGGGCCTTTTTCTTTACGCAAGGGATCGTCTCGATCGCGCGGAAGAGATGGTCCCT 20089
Query 126298 TTC--TGATGGATCTTTGATGTACTTATCTATGAG 126330
|| || || ||||||||||| | |||| |||
Sbjct 20088 CTCCTTGTTG--TCTTTGATGTAAGTGTCTAAGAG 20056
>seq12321
Length=6064
Score = 125 bits (138), Expect = 9e-24
Identities = 187/263 (71%), Gaps = 7/263 (3%)
Strand=Plus/Minus
Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117
||| || |||||||| | |||||||| || || |||||| ||| || |||||||| ||
Sbjct 1373 GTGAAGCCCCTCGTCTCTCGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGCCC 1314
Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177
|||||||| | |||||| |||| || || || ||||||||||| || || || ||
Sbjct 1313 ACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCA 1254
Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237
||||| || | || | ||| || || | | || | ||| | ||||||||| ||
Sbjct 1253 GGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 1197
Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 126297
||| || ||||| ||| ||| || |||| ||||| ||| || ||||| | | | |
Sbjct 1196 CCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGGCCCGGAAGAGGTGGTCCCT 1137
Query 126298 TTC--TGATGGATCTTTGATGTA 126318
|| || || |||||||||||
Sbjct 1136 CTCCTTGTTG--TCTTTGATGTA 1116
>seq13279
Length=5599
Score = 89.7 bits (98), Expect = 6e-13
Identities = 322/499 (65%), Gaps = 20/499 (4%)
Strand=Plus/Minus
Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846
|| ||||| |||||||| | || | |||| |||||| |||||| | || || ||
Sbjct 917 CGGTCAAAACGACCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTGGTTGCA 858
Query 10847 GCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGA 10903
|| | |||| | || || |||| ||||| |||||||||||||||||||| |||
Sbjct 857 GCAACCACAATAACACCAGT---GTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGA 801
Query 10904 TTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCACC---CGCACTGCGT---TGC 10957
|| | || || || | ||||||||| | ||||| | || | | | |||
Sbjct 800 TTAAGCGTCTGCTCTCTCTCATCATTCCC------TCCACCGATCCCAGTCCCTCTCTGC 747
Query 10958 TTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACT 11017
|||| || || ||||| || || | || || || || || ||| || || |
Sbjct 746 CTACCAACAGCATCAATCTCGTCCACAAAGACAATGCAAGGAGCATTCTCCTTAGCCTTT 687
Query 11018 TCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCG 11077
| || | ||| ||||| ||| ||||| |||||||||||||| || || || | |
Sbjct 686 TTGAAAAGATCACGGACCCTCGAAGCACCAACACCCACAAACATCTCAACGAACTCAGAA 627
Query 11078 GCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 11136
| | | |||| | ||| || || | |||||| || ||||| || | || ||
Sbjct 626 CCAG-AGATTGAAAAGAAAGGCACACCAGCTTCACCAGCAATGGCCTTTGCTAACAGAGT 568
Query 11137 CTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTTCC 11196
|| || || ||||| || |||| ||| |||| ||||||| |||||| |
Sbjct 567 TTTACCAGTGCCAGGAGGACCAACGAGGAGGACACCTTTCGGGATCCGAGCACCAACCGC 508
Query 11197 AAAGTAGCGCTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCAGC 11256
| | | | |||||| | || || || ||||| | || || || | ||| || |
Sbjct 507 AGTGAACCTCTCAGGCTTCTTGAGAAACTCCACCACCTCCATGAAGTCCTGCTTGGCTTC 448
Query 11257 GTCGATGCCTTCAACGTCA 11275
|||| || ||||||||
Sbjct 447 ATCGACTCCAGCAACGTCA 429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596870251334560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |