Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq549 129 7e-25 seq12321 125 9e-24 seq13279 89.7 6e-13 >seq549 Length=32968 Score = 129 bits (142), Expect = 7e-25 Identities = 195/275 (71%), Gaps = 7/275 (3%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| || ||||| | ||||| || || || |||||| || || |||||||| || Sbjct 20325 GTGGAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGCCC 20266 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||||| |||||| |||| || || |||||||||||||| || ||||| || Sbjct 20265 ACGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTGCCCGAGAAGAAGATCCCTTCCACGCA 20206 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 |||||||| | || | ||| || |||| | | | || | |||||||| || Sbjct 20205 AGCGAACGCCACGATCCTCTCGGCGAAGGCCTGAGGC---CCATCGATCCACTTCAAGGC 20149 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 126297 ||| || |||||||||| | || |||| |||| |||||| ||||| | | | | Sbjct 20148 CCATTGGGCCTTTTTCTTTACGCAAGGGATCGTCTCGATCGCGCGGAAGAGATGGTCCCT 20089 Query 126298 TTC--TGATGGATCTTTGATGTACTTATCTATGAG 126330 || || || ||||||||||| | |||| ||| Sbjct 20088 CTCCTTGTTG--TCTTTGATGTAAGTGTCTAAGAG 20056 >seq12321 Length=6064 Score = 125 bits (138), Expect = 9e-24 Identities = 187/263 (71%), Gaps = 7/263 (3%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || |||||||| | |||||||| || || |||||| ||| || |||||||| || Sbjct 1373 GTGAAGCCCCTCGTCTCTCGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGCCC 1314 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| |||| || || || ||||||||||| || || || || Sbjct 1313 ACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCA 1254 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 ||||| || | || | ||| || || | | || | ||| | ||||||||| || Sbjct 1253 GGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 1197 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 126297 ||| || ||||| ||| ||| || |||| ||||| ||| || ||||| | | | | Sbjct 1196 CCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGGCCCGGAAGAGGTGGTCCCT 1137 Query 126298 TTC--TGATGGATCTTTGATGTA 126318 || || || ||||||||||| Sbjct 1136 CTCCTTGTTG--TCTTTGATGTA 1116 >seq13279 Length=5599 Score = 89.7 bits (98), Expect = 6e-13 Identities = 322/499 (65%), Gaps = 20/499 (4%) Strand=Plus/Minus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 || ||||| |||||||| | || | |||| |||||| |||||| | || || || Sbjct 917 CGGTCAAAACGACCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTGGTTGCA 858 Query 10847 GCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGA 10903 || | |||| | || || |||| ||||| |||||||||||||||||||| ||| Sbjct 857 GCAACCACAATAACACCAGT---GTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGA 801 Query 10904 TTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCACC---CGCACTGCGT---TGC 10957 || | || || || | ||||||||| | ||||| | || | | | ||| Sbjct 800 TTAAGCGTCTGCTCTCTCTCATCATTCCC------TCCACCGATCCCAGTCCCTCTCTGC 747 Query 10958 TTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACT 11017 |||| || || ||||| || || | || || || || || ||| || || | Sbjct 746 CTACCAACAGCATCAATCTCGTCCACAAAGACAATGCAAGGAGCATTCTCCTTAGCCTTT 687 Query 11018 TCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCG 11077 | || | ||| ||||| ||| ||||| |||||||||||||| || || || | | Sbjct 686 TTGAAAAGATCACGGACCCTCGAAGCACCAACACCCACAAACATCTCAACGAACTCAGAA 627 Query 11078 GCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 11136 | | | |||| | ||| || || | |||||| || ||||| || | || || Sbjct 626 CCAG-AGATTGAAAAGAAAGGCACACCAGCTTCACCAGCAATGGCCTTTGCTAACAGAGT 568 Query 11137 CTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTTCC 11196 || || || ||||| || |||| ||| |||| ||||||| |||||| | Sbjct 567 TTTACCAGTGCCAGGAGGACCAACGAGGAGGACACCTTTCGGGATCCGAGCACCAACCGC 508 Query 11197 AAAGTAGCGCTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCAGC 11256 | | | | |||||| | || || || ||||| | || || || | ||| || | Sbjct 507 AGTGAACCTCTCAGGCTTCTTGAGAAACTCCACCACCTCCATGAAGTCCTGCTTGGCTTC 448 Query 11257 GTCGATGCCTTCAACGTCA 11275 |||| || |||||||| Sbjct 447 ATCGACTCCAGCAACGTCA 429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596870251334560