Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq7912 125 8e-24
seq4396 125 8e-24
seq11485 118 1e-21
seq24793 116 4e-21
seq964 116 4e-21
seq14782 113 5e-20
seq12662 113 5e-20
seq1703 113 5e-20
seq3667 109 6e-19
seq1045 104 3e-17
seq806 102 9e-17
seq25552 93.3 5e-14
seq37186 91.5 2e-13
seq7348 89.7 6e-13
seq20570 87.8 2e-12
>seq7912
Length=9007
Score = 125 bits (138), Expect = 8e-24
Identities = 160/219 (73%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
|||||||||||| || | |||| ||||||||| |||||||| || || | || || |
Sbjct 6119 ACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATATTGTAGTCGGCTAAGGTGCGACC 6178
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || |||||||| |||||||| ||||| ||||||||||| | || | | |||||
Sbjct 6179 ATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTT 6238
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169
||| ||| || |||| | | | ||||| |||| ||||| || | |||
Sbjct 6239 ATCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTC---TCCACCTCCAACGT 6295
Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||||| ||||| || || ||||| |||||||| |||||
Sbjct 6296 GATGGTCTTGCCGGTAAGTGTCTTGACAAAGATCTGCAT 6334
Score = 100 bits (110), Expect = 3e-16
Identities = 163/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
||||| | | |||||||||||| || | |||| ||||||||| || ||||| || ||
Sbjct 6336 CCTCCACGCAGACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGCT 6395
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
| || || | || || ||||| || |||||||| ||||| | ||||||||| | ||
Sbjct 6396 AAGGTGCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGCCTCTGCTGGTCCGGAGGG 6455
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 42157
| | ||||||||| ||| || |||| ||| | | | ||||| |||| ||
Sbjct 6456 ATACCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTC---TC 6511
Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || | || ||||| || || || | ||||| |||||||| |||||
Sbjct 6512 AACCTCCAAAGTAATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 6562
>seq4396
Length=13502
Score = 125 bits (138), Expect = 8e-24
Identities = 171/232 (74%), Gaps = 10/232 (4%)
Strand=Plus/Minus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
||||| | | |||||||||||| || | ||| |||||| || || || || ||||||
Sbjct 328 CCTCCACGCAGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGGATGTTATAGTCAGCC 269
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
| || || | || || |||||||| |||||||| ||||| ||||||||||| | |||
Sbjct 268 AAGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 209
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156
| | |||||||||| ||| | || | |||| ||| | | | ||||| |||| |
Sbjct 208 ATTCCCTCCTTGTCC-TGAATCTTAGCCTTGA-CGTTGTCAATGGTGTCGGAGCTC---T 154
Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || |||| ||||| || || || ||||| ||||| |||||||| |||||
Sbjct 153 CAACTTCGAGGGTGATTGTCTTTCCGGTTAGTGTCTTGACAAAGATCTGCAT 102
Score = 120 bits (132), Expect = 3e-22
Identities = 167/232 (72%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
|||||| ||||| || | ||| |||||| || |||||||| ||||| ||||||| |
Sbjct 545 ACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGGATATTGTAGTCAGCGAGAGTCCTGCC 486
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || |||||||| |||||||| ||||| ||||||||||| | || | | |||||
Sbjct 485 GTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATCCCTTCCTT 426
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169
|| ||| || ||| | | | | |||||| |||| ||||| || | ||
Sbjct 425 ATCTTGGATCTTGGCTTTCACGTTATCAATCGTGTCCGAGCTC---TCCACCTCCAGTGT 369
Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT--TTCACGCCGA 42219
|||||| || || || | ||||| || |||||||||||| | ||||| ||
Sbjct 368 GATGGTCTTACCAGTCAAGGTCTTGACGAAGATTTGCATTCCTCCACGCAGA 317
Score = 114 bits (126), Expect = 1e-20
Identities = 162/221 (73%), Gaps = 10/221 (5%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| |||||||| || | || ||| || ||||| ||||||||||||| || || |
Sbjct 12706 ACGTAACACCAAGTGAAGGGTTGACTCTTTCTGAATGTTGTAATCAGCCAAGGTGCGACC 12647
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || |||||||| |||||||| ||||| ||||||||||| | ||| | | ||||||
Sbjct 12646 ATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATCCCCTCCTT 12587
Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACC 42167
|||| ||| | || | |||| ||| | | | ||||| |||| ||||| || |
Sbjct 12586 GTCC-TGAATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTC---TCCACCTCCAAA 12532
Query 42168 GTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||||| || || || || || ||||| ||||| || |||||
Sbjct 12531 GTGATAGTCTTCCCGGTCAGTGTCTTAACAAAAATCTGCAT 12491
>seq11485
Length=6519
Score = 118 bits (130), Expect = 1e-21
Identities = 144/195 (74%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || |||||||| ||||| || || |||| ||||||||||| ||||||||
Sbjct 4669 CTCCTTCTGGATGTTGTAATCGGCCAGGGTGCGTCCGTCTTCTAGCTGCTTCCCAGCGAA 4610
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||| | ||||||||||| || | || ||||||||| ||| ||| |||| |
Sbjct 4609 GATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATT 4550
Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193
| | ||||| |||| || || |||| |||||||| ||||| || || || ||
Sbjct 4549 GTCTATAGTGTCGGAGCTC---TCGACCTCGAGAGTGATGGTCTTGCCGGTGAGTGTTTT 4493
Query 42194 TACAAAGATTTGCAT 42208
|| || ||||||||
Sbjct 4492 CACGAAAATTTGCAT 4478
Score = 109 bits (120), Expect = 6e-19
Identities = 144/196 (73%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||||||||||| |||||| | || || ||||| || ||||||||
Sbjct 5125 CTCCTTCTGGATGTTGTAATCAGCCAAAGTCCGACCATCCTCGAGCTGTTTCCCAGCGAA 5066
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
||||||| ||||||||| | || | || ||||||||| ||| | || | ||| |
Sbjct 5065 GATGAGTCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCC-TGAATCTTCGCTTTCACAT 5007
Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192
| | | |||||| |||| ||||| || | || |||||||| || || || ||||
Sbjct 5006 TGTCGATCGTGTCAGAGCTC---TCCACTTCAAGGGTAATGGTTTTACCGGTGAGTGTCT 4950
Query 42193 TTACAAAGATTTGCAT 42208
| || || || |||||
Sbjct 4949 TGACGAAAATCTGCAT 4934
Score = 105 bits (116), Expect = 7e-18
Identities = 141/195 (72%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| |||||||||||||| || || || || | || || ||||| |||||||||||
Sbjct 4897 CTCCTTCTGAATATTGTAATCCGCAAGCGTGCGTCCATCCTCAAGCTGTTTACCAGCGAA 4838
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||||| ||||||||| | || | | ||||||||| ||| ||| ||| | |
Sbjct 4837 GATGAGTCTCTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCTTTCACATT 4778
Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193
| | ||||| |||| || || || | |||||||| ||||| || | |||||
Sbjct 4777 GTCAATAGTGTCGGAGCTC---TCAACCTCCAAAGTGATGGTCTTGCCTGTCAAAGTCTT 4721
Query 42194 TACAAAGATTTGCAT 42208
||||| || |||||
Sbjct 4720 GACAAAAATCTGCAT 4706
>seq24793
Length=2311
Score = 116 bits (128), Expect = 4e-21
Identities = 158/219 (72%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
|||||| ||||| || | ||| |||||| || |||||||| ||||| |||||||| |
Sbjct 1170 ACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGGATATTGTAGTCAGCGAGAGTCCGACC 1229
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || |||||||| |||||||| ||||| ||||||||||| | || | | |||||
Sbjct 1230 ATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATCCCTTCCTT 1289
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169
|| ||| || ||| | | | | |||||| |||| || || |||| ||
Sbjct 1290 ATCTTGGATCTTGGCTTTCACGTTATCAATCGTGTCCGAGCTC---TCAACTTCGAGGGT 1346
Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||||| || || || | ||||| |||||||| |||||
Sbjct 1347 GATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 1385
Score = 113 bits (124), Expect = 5e-20
Identities = 145/196 (74%), Gaps = 8/196 (4%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||||||||| ||||||| |||| || |||||||| || |||||
Sbjct 1650 CTCCTTCTGGATGTTGTAATCAGCGAGAGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 1709
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| || | |||||| || | || | || |||||||||| ||| | || | || | |||
Sbjct 1710 GATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGCTTTAACGT 1768
Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192
| | | ||||| ||| |||||| |||| ||||| || || ||||| || ||||
Sbjct 1769 TGTCGATGGTGTCTGAGCT---TTCCACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTCT 1825
Query 42193 TTACAAAGATTTGCAT 42208
| ||||| || |||||
Sbjct 1826 TAACAAAAATCTGCAT 1841
>seq964
Length=27231
Score = 116 bits (128), Expect = 4e-21
Identities = 160/220 (73%), Gaps = 8/220 (4%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||||||||| | || | || |||||| || ||||||||||| || || || || |
Sbjct 10392 ACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCTGCAAGCGTACGACC 10333
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || ||||| || |||||||| ||||||| ||||||||| | ||| | | |||||
Sbjct 10332 ATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGTGGGATCCCTTCCTT 10273
Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 42168
|||| ||| | || | |||| | | | |||||| |||| ||||| || | |
Sbjct 10272 GTCC-TGAATCTTAGCCTTGACGTTATCGATCGTGTCAGAGCTC---TCCACCTCCAAAG 10217
Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||||||||||||| || || ||||| ||||| || |||||
Sbjct 10216 TGATGGTTTTGCCAGTGAGGGTCTTCACAAAAATCTGCAT 10177
Score = 104 bits (114), Expect = 3e-17
Identities = 164/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|| ||||| | || | ||| | ||||| || ||| || ||||| ||||| |||||
Sbjct 10175 CCACCTCTGAGTCGAAGCACAAGATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCAGCT 10116
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
|| || || | || || ||||||||||| || || ||||| | ||||||||| | |||
Sbjct 10115 AGCGTGCGTCCATCCTCCAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGG 10056
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 42157
| | ||| || ||| ||| || |||| ||| | | | ||||| |||| ||
Sbjct 10055 ATACCCTCTTTATCCTGGATCTTAGCCTTGA-CGTTGTCAATGGTGTCTGAGCTC---TC 10000
Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || | ||||||||||| || || || ||||| ||||||||||||||
Sbjct 9999 AACCTCCAAAGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCAT 9949
Score = 100 bits (110), Expect = 3e-16
Identities = 142/196 (72%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || |||||||| ||||| || || || | || || |||||||||||||||||
Sbjct 10596 CTCCTTCTGGATATTGTAGTCAGCAAGCGTGCGACCATCCTCAAGCTGCTTACCAGCGAA 10537
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
||||||| ||| ||||| | || | | ||||||||| ||| |||| | || |
Sbjct 10536 GATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCC-TGAATTTTAGCCTTCACAT 10478
Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192
| | | ||||| |||| || || || | || || || ||||| || || ||||
Sbjct 10477 TGTCGATTGTGTCTGAGCTC---TCAACTTCCAAGGTAATAGTCTTGCCTGTCAGAGTCT 10421
Query 42193 TTACAAAGATTTGCAT 42208
| ||||||||||||||
Sbjct 10420 TCACAAAGATTTGCAT 10405
Score = 87.8 bits (96), Expect = 2e-12
Identities = 137/195 (70%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || ||||||||||| |||| || || | || || ||||| ||||| |||||
Sbjct 9684 CTCCTTCTGGATATTGTAATCGGCCAAGGTACGTCCATCCTCGAGCTGTTTACCGGCGAA 9625
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||| | ||||||||| | || | | ||||||||| ||| || |||| |
Sbjct 9624 GATGAGCCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTAGCCTTGACGTT 9565
Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193
| | || || |||| || || |||| |||||||| ||||| || || || ||
Sbjct 9564 ATCGATGGTATCGGAGCTC---TCGACTTCGAGAGTGATGGTCTTGCCGGTGAGAGTTTT 9508
Query 42194 TACAAAGATTTGCAT 42208
|| || ||||||||
Sbjct 9507 CACGAAAATTTGCAT 9493
Score = 87.8 bits (96), Expect = 2e-12
Identities = 137/195 (70%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| ||||| || || || | || || |||||||||||||| ||
Sbjct 9912 CTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGACCATCCTCCAGCTGCTTACCAGCAAA 9853
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| || | |||||| || | || | || |||||||||| ||| || |||| |
Sbjct 9852 AATAAGCCTCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATT 9793
Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193
| | ||||| |||| || || || | |||||||| || ||||| | |||||
Sbjct 9792 GTCAATAGTGTCGGAGCTC---TCAACCTCCAGAGTGATGGTCTTTCCCGTCAAAGTCTT 9736
Query 42194 TACAAAGATTTGCAT 42208
|| ||||| |||||
Sbjct 9735 GACGAAGATCTGCAT 9721
>seq14782
Length=4961
Score = 113 bits (124), Expect = 5e-20
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|||||||| | ||| | |||| || | || |||||| || || |||||||| ||
Sbjct 1969 CCTCCTCTCAGACGGAGAACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCCGCG 2028
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
|| |||| |||| || |||||||| || ||||| || || ||||||||||| | |||
Sbjct 2029 AGGGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGG 2088
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| | ||||||||| ||| | || | |||| | | | ||||||| ||||| ||
Sbjct 2089 ATCCCTTCCTTGTCC-TGAATCTTGGCCTTGACATTGTCGATCGTGTCGGATGATTCGAC 2147
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211
|| | || || || || |||||||| || || || ||||| ||||||||
Sbjct 2148 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 2198
>seq12662
Length=5898
Score = 113 bits (124), Expect = 5e-20
Identities = 145/196 (74%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||||||||| ||||||| |||| || |||||||| || |||||
Sbjct 3452 CTCCTTCTGGATGTTGTAATCAGCGAGAGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 3393
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| || | |||||| || | || | || |||||||||| ||| | || | || | |||
Sbjct 3392 GATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGCTTTAACGT 3334
Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192
| | | ||||| ||| |||||| |||| ||||| || || ||||| || ||||
Sbjct 3333 TGTCGATGGTGTCTGAGCT---TTCCACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTCT 3277
Query 42193 TTACAAAGATTTGCAT 42208
| ||||| || |||||
Sbjct 3276 TAACAAAAATCTGCAT 3261
Score = 98.7 bits (108), Expect = 1e-15
Identities = 154/219 (70%), Gaps = 6/219 (3%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
|||||||||||| || | || |||||| || || ||||| || || || || || |
Sbjct 3932 ACGCAACACCAAGTGAATGGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACC 3873
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || |||||||| |||||||| ||||| ||||||||||| | || | || |||||
Sbjct 3872 ATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTT 3813
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169
|| ||| || ||| | | | | |||||| |||| || || |||| ||
Sbjct 3812 ATCTTGGATCTTGGCTTTCACGTTATCAATCGTGTCCGAGCTC---TCAACTTCGAGGGT 3756
Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||||| || || || | ||||| || ||||| |||||
Sbjct 3755 GATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 3717
>seq1703
Length=21771
Score = 113 bits (124), Expect = 5e-20
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
||||| | || |||||| ||||| || | || |||||| || ||||||||||| |||
Sbjct 18824 CCTCCACGTAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATATTGTAATCGGCC 18883
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
| || || | || || |||||||| || ||||| ||||| |||||||| || | ||
Sbjct 18884 AAGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGG 18943
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160
| | ||||||||| ||| || ||| | ||| | | | |||||| ||||||
Sbjct 18944 ATCCCTTCCTTGTCCTGGATCTTGGCTTTCA-CGTTGTCGATGGTGTCGGAGCTTTCCAC 19002
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211
|||| ||||| || || || || || || || || ||||||||||| ||
Sbjct 19003 CTCGAGGGTGATTGTCTTCCCGGTGAGAGTTTTCACGAAGATTTGCATCTT 19053
Score = 102 bits (112), Expect = 9e-17
Identities = 157/220 (71%), Gaps = 8/220 (4%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| |||||||| || | || ||| || ||||| ||||||||||||| || || |
Sbjct 18151 ACGTAACACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAATCAGCCAAGGTGCGACC 18210
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || |||||||| ||||||||||| || | ||||||||| | || | | ||| ||
Sbjct 18211 ATCCTCGAGCTGCTTCCCAGCGAATATCAGCCTCTGCTGGTCCGGAGGGATACCCTCTTT 18270
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATTCCACATCGACCG 42168
||| |||||| ||| | ||| | | | |||||| ||| ||||| || | |
Sbjct 18271 GTCTTGGATTTTCGCTTTCA-CGTTGTCAATGGTGTCGGAACTC---TCCACCTCTAAAG 18326
Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||| || || || || | |||||| || ||||| |||||
Sbjct 18327 TGATCGTCTTTCCTGTCAACGTCTTAACGAAGATCTGCAT 18366
>seq3667
Length=14967
Score = 109 bits (120), Expect = 6e-19
Identities = 141/195 (72%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || || || || ||| |||| || ||||| || || |||||
Sbjct 5530 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTGTTTCCCGGCGAA 5589
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| || ||||||||||| | || | || ||||||||| ||| || ||||| |
Sbjct 5590 GATCAGCCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATT 5649
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | |||||| ||||| || |||| ||||| || || |||||||| || || ||
Sbjct 5650 GTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCAC 5709
Query 42197 AAAGATTTGCATTTT 42211
||||| ||||| ||
Sbjct 5710 GAAGATCTGCATCTT 5724
>seq1045
Length=26565
Score = 104 bits (114), Expect = 3e-17
Identities = 142/196 (72%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || || || || ||| |||| || ||||| || || |||||
Sbjct 2827 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTGTTTCCCGGCGAA 2886
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| || ||||||||||| | || | || ||||||||| ||| || |||| |||
Sbjct 2887 GATCAGCCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 2945
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | |||||| || || || |||| ||||| || || |||||||| || || |
Sbjct 2946 TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCA 3005
Query 42196 CAAAGATTTGCATTTT 42211
| ||||| ||||| ||
Sbjct 3006 CGAAGATCTGCATCTT 3021
>seq806
Length=29032
Score = 102 bits (112), Expect = 9e-17
Identities = 144/197 (73%), Gaps = 4/197 (2%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || || || || || |||| || |||||||| || |||||
Sbjct 17985 CTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGGCCGTCTTCGAGCTGCTTCCCGGCGAA 18044
Query 42077 TATGAGTCGCTGCTGGT-CGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG 42135
|| ||||||||||||| |||| || | || ||||||||| ||| || |||| ||
Sbjct 18045 GATCAGTCGCTGCTGGTCCGGCGGGATCCCT-TCCTTGTCCTGGATCTTGGCCTTGA-CG 18102
Query 42136 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194
| | | | |||||| || || || |||| || || || || |||||||| || ||
Sbjct 18103 TTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTTATCGTCTTCCCCGTTAGGGTTTTC 18162
Query 42195 ACAAAGATTTGCATTTT 42211
|| ||||| ||||| ||
Sbjct 18163 ACGAAGATCTGCATCTT 18179
>seq25552
Length=2169
Score = 93.3 bits (102), Expect = 5e-14
Identities = 136/191 (71%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 42019 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| || || ||||| ||||||| ||| || | || || ||||| ||||| |||||
Sbjct 435 CCTTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTACCGGCGAAG 376
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137
|| || |||||||| || | || | | || ||||| ||| || ||||| |
Sbjct 375 ATCAGACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTG 316
Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197
| | |||||| || || || |||| |||||||| ||||||||||| || || ||
Sbjct 315 TCGATGGTGTCGGAGGACTCGACTTCGAGAGTGATGGTCTTGCCCGTTAGGGTTTTCACG 256
Query 42198 AAGATTTGCAT 42208
||||| |||||
Sbjct 255 AAGATCTGCAT 245
>seq37186
Length=985
Score = 91.5 bits (100), Expect = 2e-13
Identities = 141/199 (71%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
||| ||||| || ||||| ||||||| || | |||| || | ||| || || |||||
Sbjct 475 CTCTTTTTGGATGTTGTAGTCAGCCAATGTTCTGCCGTCCTCCAACTGTTTCCCGGCGAA 534
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| || | |||||| |||| || | | ||| |||||| ||| | || | || | |||
Sbjct 535 GATAAGCCTCTGCTGATCGGGAGGGATACCCTCTTTGTCC-TGAATCTTGGCTTTAACGT 593
Query 42137 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | |||||| |||||| |||| ||||| || || || || || ||||| |
Sbjct 594 TGTCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGATCGTCTTCCCAGTGAGAGTCTTAA 653
Query 42196 CAAAGATTTGCATTTTCAC 42214
| ||||||||||| | |||
Sbjct 654 CGAAGATTTGCATCTGCAC 672
>seq7348
Length=9517
Score = 89.7 bits (98), Expect = 6e-13
Identities = 147/208 (71%), Gaps = 8/208 (4%)
Strand=Plus/Minus
Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058
|||||| || | || |||||| || || ||||| || || ||||| || | || ||
Sbjct 206 CACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGACCATCCTC 147
Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118
|||||||| |||||||| ||||| ||||||||||| | || | | |||||||||
Sbjct 146 GAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTG 87
Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 42174
||| || || | ||| | | | ||||| |||| || || || | |||||||
Sbjct 86 GATCTTAGCCTTCA-CGTTGTCAATGGTGTCGGAGCTC---TCAACTTCCAATGTGATGG 31
Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGAT 42202
| ||||| || || ||||| || |||||
Sbjct 30 TCTTGCCGGTAAGAGTCTTCACGAAGAT 3
>seq20570
Length=3172
Score = 87.8 bits (96), Expect = 2e-12
Identities = 161/232 (69%), Gaps = 8/232 (3%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| || | || |||||||||||| || | || |||||| || || ||||| |||||
Sbjct 291 ACCACCACGTAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGC 350
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
|| || | | |||| || | |||||| || ||||| || || | |||||| || | ||
Sbjct 351 CAAGGTTCTCCCGTCCTCCAACTGCTTTCCTGCGAAGATAAGCCTCTGCTGATCCGGAGG 410
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156
| | ||||||||| || | || | | | ||| | | | ||||| ||| ||
Sbjct 411 AATCCCTTCCTTGTCC-TGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGCT---TT 466
Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||| |||| ||||| || || || || || || || || ||||| |||||
Sbjct 467 CCACCTCGAGGGTGATTGTCTTTCCTGTGAGAGTTTTCACGAAGATCTGCAT 518
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 542773259362880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |