Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq7912 125 8e-24 seq4396 125 8e-24 seq11485 118 1e-21 seq24793 116 4e-21 seq964 116 4e-21 seq14782 113 5e-20 seq12662 113 5e-20 seq1703 113 5e-20 seq3667 109 6e-19 seq1045 104 3e-17 seq806 102 9e-17 seq25552 93.3 5e-14 seq37186 91.5 2e-13 seq7348 89.7 6e-13 seq20570 87.8 2e-12 >seq7912 Length=9007 Score = 125 bits (138), Expect = 8e-24 Identities = 160/219 (73%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||||||||| || | |||| ||||||||| |||||||| || || | || || | Sbjct 6119 ACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATATTGTAGTCGGCTAAGGTGCGACC 6178 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| |||||||| ||||| ||||||||||| | || | | ||||| Sbjct 6179 ATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTT 6238 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 ||| ||| || |||| | | | ||||| |||| ||||| || | ||| Sbjct 6239 ATCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTC---TCCACCTCCAACGT 6295 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| ||||| || || ||||| |||||||| ||||| Sbjct 6296 GATGGTCTTGCCGGTAAGTGTCTTGACAAAGATCTGCAT 6334 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | |||||||||||| || | |||| ||||||||| || ||||| || || Sbjct 6336 CCTCCACGCAGACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGCT 6395 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || | || || ||||| || |||||||| ||||| | ||||||||| | || Sbjct 6396 AAGGTGCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGCCTCTGCTGGTCCGGAGGG 6455 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 42157 | | ||||||||| ||| || |||| ||| | | | ||||| |||| || Sbjct 6456 ATACCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTC---TC 6511 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || ||||| || || || | ||||| |||||||| ||||| Sbjct 6512 AACCTCCAAAGTAATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 6562 >seq4396 Length=13502 Score = 125 bits (138), Expect = 8e-24 Identities = 171/232 (74%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | |||||||||||| || | ||| |||||| || || || || |||||| Sbjct 328 CCTCCACGCAGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGGATGTTATAGTCAGCC 269 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || | || || |||||||| |||||||| ||||| ||||||||||| | ||| Sbjct 268 AAGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 209 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | | |||||||||| ||| | || | |||| ||| | | | ||||| |||| | Sbjct 208 ATTCCCTCCTTGTCC-TGAATCTTAGCCTTGA-CGTTGTCAATGGTGTCGGAGCTC---T 154 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||| ||||| || || || ||||| ||||| |||||||| ||||| Sbjct 153 CAACTTCGAGGGTGATTGTCTTTCCGGTTAGTGTCTTGACAAAGATCTGCAT 102 Score = 120 bits (132), Expect = 3e-22 Identities = 167/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||| ||||| || | ||| |||||| || |||||||| ||||| ||||||| | Sbjct 545 ACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGGATATTGTAGTCAGCGAGAGTCCTGCC 486 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| ||||| ||||||||||| | || | | ||||| Sbjct 485 GTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATCCCTTCCTT 426 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 || ||| || ||| | | | | |||||| |||| ||||| || | || Sbjct 425 ATCTTGGATCTTGGCTTTCACGTTATCAATCGTGTCCGAGCTC---TCCACCTCCAGTGT 369 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT--TTCACGCCGA 42219 |||||| || || || | ||||| || |||||||||||| | ||||| || Sbjct 368 GATGGTCTTACCAGTCAAGGTCTTGACGAAGATTTGCATTCCTCCACGCAGA 317 Score = 114 bits (126), Expect = 1e-20 Identities = 162/221 (73%), Gaps = 10/221 (5%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| |||||||| || | || ||| || ||||| ||||||||||||| || || | Sbjct 12706 ACGTAACACCAAGTGAAGGGTTGACTCTTTCTGAATGTTGTAATCAGCCAAGGTGCGACC 12647 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| |||||||| ||||| ||||||||||| | ||| | | |||||| Sbjct 12646 ATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATCCCCTCCTT 12587 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACC 42167 |||| ||| | || | |||| ||| | | | ||||| |||| ||||| || | Sbjct 12586 GTCC-TGAATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTC---TCCACCTCCAAA 12532 Query 42168 GTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || || || || ||||| ||||| || ||||| Sbjct 12531 GTGATAGTCTTCCCGGTCAGTGTCTTAACAAAAATCTGCAT 12491 >seq11485 Length=6519 Score = 118 bits (130), Expect = 1e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||| ||||| || || |||| ||||||||||| |||||||| Sbjct 4669 CTCCTTCTGGATGTTGTAATCGGCCAGGGTGCGTCCGTCTTCTAGCTGCTTCCCAGCGAA 4610 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| | ||||||||||| || | || ||||||||| ||| ||| |||| | Sbjct 4609 GATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATT 4550 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| |||| || || |||| |||||||| ||||| || || || || Sbjct 4549 GTCTATAGTGTCGGAGCTC---TCGACCTCGAGAGTGATGGTCTTGCCGGTGAGTGTTTT 4493 Query 42194 TACAAAGATTTGCAT 42208 || || |||||||| Sbjct 4492 CACGAAAATTTGCAT 4478 Score = 109 bits (120), Expect = 6e-19 Identities = 144/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||||||||||| |||||| | || || ||||| || |||||||| Sbjct 5125 CTCCTTCTGGATGTTGTAATCAGCCAAAGTCCGACCATCCTCGAGCTGTTTCCCAGCGAA 5066 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||||| ||||||||| | || | || ||||||||| ||| | || | ||| | Sbjct 5065 GATGAGTCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCC-TGAATCTTCGCTTTCACAT 5007 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | |||||| |||| ||||| || | || |||||||| || || || |||| Sbjct 5006 TGTCGATCGTGTCAGAGCTC---TCCACTTCAAGGGTAATGGTTTTACCGGTGAGTGTCT 4950 Query 42193 TTACAAAGATTTGCAT 42208 | || || || ||||| Sbjct 4949 TGACGAAAATCTGCAT 4934 Score = 105 bits (116), Expect = 7e-18 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| |||||||||||||| || || || || | || || ||||| ||||||||||| Sbjct 4897 CTCCTTCTGAATATTGTAATCCGCAAGCGTGCGTCCATCCTCAAGCTGTTTACCAGCGAA 4838 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||||| ||||||||| | || | | ||||||||| ||| ||| ||| | | Sbjct 4837 GATGAGTCTCTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCTTTCACATT 4778 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| |||| || || || | |||||||| ||||| || | ||||| Sbjct 4777 GTCAATAGTGTCGGAGCTC---TCAACCTCCAAAGTGATGGTCTTGCCTGTCAAAGTCTT 4721 Query 42194 TACAAAGATTTGCAT 42208 ||||| || ||||| Sbjct 4720 GACAAAAATCTGCAT 4706 >seq24793 Length=2311 Score = 116 bits (128), Expect = 4e-21 Identities = 158/219 (72%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||| ||||| || | ||| |||||| || |||||||| ||||| |||||||| | Sbjct 1170 ACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGGATATTGTAGTCAGCGAGAGTCCGACC 1229 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| |||||||| ||||| ||||||||||| | || | | ||||| Sbjct 1230 ATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATCCCTTCCTT 1289 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 || ||| || ||| | | | | |||||| |||| || || |||| || Sbjct 1290 ATCTTGGATCTTGGCTTTCACGTTATCAATCGTGTCCGAGCTC---TCAACTTCGAGGGT 1346 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| || || || | ||||| |||||||| ||||| Sbjct 1347 GATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 1385 Score = 113 bits (124), Expect = 5e-20 Identities = 145/196 (74%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||||||||| ||||||| |||| || |||||||| || ||||| Sbjct 1650 CTCCTTCTGGATGTTGTAATCAGCGAGAGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 1709 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | |||||| || | || | || |||||||||| ||| | || | || | ||| Sbjct 1710 GATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGCTTTAACGT 1768 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| ||| |||||| |||| ||||| || || ||||| || |||| Sbjct 1769 TGTCGATGGTGTCTGAGCT---TTCCACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTCT 1825 Query 42193 TTACAAAGATTTGCAT 42208 | ||||| || ||||| Sbjct 1826 TAACAAAAATCTGCAT 1841 >seq964 Length=27231 Score = 116 bits (128), Expect = 4e-21 Identities = 160/220 (73%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||||||| | || | || |||||| || ||||||||||| || || || || | Sbjct 10392 ACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCTGCAAGCGTACGACC 10333 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || ||||| || |||||||| ||||||| ||||||||| | ||| | | ||||| Sbjct 10332 ATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGTGGGATCCCTTCCTT 10273 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 42168 |||| ||| | || | |||| | | | |||||| |||| ||||| || | | Sbjct 10272 GTCC-TGAATCTTAGCCTTGACGTTATCGATCGTGTCAGAGCTC---TCCACCTCCAAAG 10217 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||||||||| || || ||||| ||||| || ||||| Sbjct 10216 TGATGGTTTTGCCAGTGAGGGTCTTCACAAAAATCTGCAT 10177 Score = 104 bits (114), Expect = 3e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | || | ||| | ||||| || ||| || ||||| ||||| ||||| Sbjct 10175 CCACCTCTGAGTCGAAGCACAAGATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCAGCT 10116 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || ||||||||||| || || ||||| | ||||||||| | ||| Sbjct 10115 AGCGTGCGTCCATCCTCCAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGG 10056 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 42157 | | ||| || ||| ||| || |||| ||| | | | ||||| |||| || Sbjct 10055 ATACCCTCTTTATCCTGGATCTTAGCCTTGA-CGTTGTCAATGGTGTCTGAGCTC---TC 10000 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||||||||| || || || ||||| |||||||||||||| Sbjct 9999 AACCTCCAAAGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCAT 9949 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||| ||||| || || || | || || ||||||||||||||||| Sbjct 10596 CTCCTTCTGGATATTGTAGTCAGCAAGCGTGCGACCATCCTCAAGCTGCTTACCAGCGAA 10537 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||||| ||| ||||| | || | | ||||||||| ||| |||| | || | Sbjct 10536 GATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCC-TGAATTTTAGCCTTCACAT 10478 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| |||| || || || | || || || ||||| || || |||| Sbjct 10477 TGTCGATTGTGTCTGAGCTC---TCAACTTCCAAGGTAATAGTCTTGCCTGTCAGAGTCT 10421 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||||||||| Sbjct 10420 TCACAAAGATTTGCAT 10405 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || ||||||||||| |||| || || | || || ||||| ||||| ||||| Sbjct 9684 CTCCTTCTGGATATTGTAATCGGCCAAGGTACGTCCATCCTCGAGCTGTTTACCGGCGAA 9625 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| | ||||||||| | || | | ||||||||| ||| || |||| | Sbjct 9624 GATGAGCCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTAGCCTTGACGTT 9565 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | || || |||| || || |||| |||||||| ||||| || || || || Sbjct 9564 ATCGATGGTATCGGAGCTC---TCGACTTCGAGAGTGATGGTCTTGCCGGTGAGAGTTTT 9508 Query 42194 TACAAAGATTTGCAT 42208 || || |||||||| Sbjct 9507 CACGAAAATTTGCAT 9493 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||| || || || | || || |||||||||||||| || Sbjct 9912 CTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGACCATCCTCCAGCTGCTTACCAGCAAA 9853 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | |||||| || | || | || |||||||||| ||| || |||| | Sbjct 9852 AATAAGCCTCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATT 9793 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| |||| || || || | |||||||| || ||||| | ||||| Sbjct 9792 GTCAATAGTGTCGGAGCTC---TCAACCTCCAGAGTGATGGTCTTTCCCGTCAAAGTCTT 9736 Query 42194 TACAAAGATTTGCAT 42208 || ||||| ||||| Sbjct 9735 GACGAAGATCTGCAT 9721 >seq14782 Length=4961 Score = 113 bits (124), Expect = 5e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||| | |||| || | || |||||| || || |||||||| || Sbjct 1969 CCTCCTCTCAGACGGAGAACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCCGCG 2028 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || |||| |||| || |||||||| || ||||| || || ||||||||||| | ||| Sbjct 2029 AGGGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGG 2088 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||||||| ||| | || | |||| | | | ||||||| ||||| || Sbjct 2089 ATCCCTTCCTTGTCC-TGAATCTTGGCCTTGACATTGTCGATCGTGTCGGATGATTCGAC 2147 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | || || || || |||||||| || || || ||||| |||||||| Sbjct 2148 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 2198 >seq12662 Length=5898 Score = 113 bits (124), Expect = 5e-20 Identities = 145/196 (74%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||||||||| ||||||| |||| || |||||||| || ||||| Sbjct 3452 CTCCTTCTGGATGTTGTAATCAGCGAGAGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 3393 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | |||||| || | || | || |||||||||| ||| | || | || | ||| Sbjct 3392 GATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGCTTTAACGT 3334 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| ||| |||||| |||| ||||| || || ||||| || |||| Sbjct 3333 TGTCGATGGTGTCTGAGCT---TTCCACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTCT 3277 Query 42193 TTACAAAGATTTGCAT 42208 | ||||| || ||||| Sbjct 3276 TAACAAAAATCTGCAT 3261 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||||||||| || | || |||||| || || ||||| || || || || || | Sbjct 3932 ACGCAACACCAAGTGAATGGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACC 3873 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| |||||||| ||||| ||||||||||| | || | || ||||| Sbjct 3872 ATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTT 3813 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 || ||| || ||| | | | | |||||| |||| || || |||| || Sbjct 3812 ATCTTGGATCTTGGCTTTCACGTTATCAATCGTGTCCGAGCTC---TCAACTTCGAGGGT 3756 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| || || || | ||||| || ||||| ||||| Sbjct 3755 GATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 3717 >seq1703 Length=21771 Score = 113 bits (124), Expect = 5e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | || |||||| ||||| || | || |||||| || ||||||||||| ||| Sbjct 18824 CCTCCACGTAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATATTGTAATCGGCC 18883 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || | || || |||||||| || ||||| ||||| |||||||| || | || Sbjct 18884 AAGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGG 18943 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160 | | ||||||||| ||| || ||| | ||| | | | |||||| |||||| Sbjct 18944 ATCCCTTCCTTGTCCTGGATCTTGGCTTTCA-CGTTGTCGATGGTGTCGGAGCTTTCCAC 19002 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 |||| ||||| || || || || || || || || ||||||||||| || Sbjct 19003 CTCGAGGGTGATTGTCTTCCCGGTGAGAGTTTTCACGAAGATTTGCATCTT 19053 Score = 102 bits (112), Expect = 9e-17 Identities = 157/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| |||||||| || | || ||| || ||||| ||||||||||||| || || | Sbjct 18151 ACGTAACACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAATCAGCCAAGGTGCGACC 18210 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| ||||||||||| || | ||||||||| | || | | ||| || Sbjct 18211 ATCCTCGAGCTGCTTCCCAGCGAATATCAGCCTCTGCTGGTCCGGAGGGATACCCTCTTT 18270 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATTCCACATCGACCG 42168 ||| |||||| ||| | ||| | | | |||||| ||| ||||| || | | Sbjct 18271 GTCTTGGATTTTCGCTTTCA-CGTTGTCAATGGTGTCGGAACTC---TCCACCTCTAAAG 18326 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || || || | |||||| || ||||| ||||| Sbjct 18327 TGATCGTCTTTCCTGTCAACGTCTTAACGAAGATCTGCAT 18366 >seq3667 Length=14967 Score = 109 bits (120), Expect = 6e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || ||| |||| || ||||| || || ||||| Sbjct 5530 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTGTTTCCCGGCGAA 5589 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || ||||||||| ||| || ||||| | Sbjct 5590 GATCAGCCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATT 5649 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| ||||| || |||| ||||| || || |||||||| || || || Sbjct 5650 GTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCAC 5709 Query 42197 AAAGATTTGCATTTT 42211 ||||| ||||| || Sbjct 5710 GAAGATCTGCATCTT 5724 >seq1045 Length=26565 Score = 104 bits (114), Expect = 3e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || ||| |||| || ||||| || || ||||| Sbjct 2827 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTGTTTCCCGGCGAA 2886 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || ||||||||| ||| || |||| ||| Sbjct 2887 GATCAGCCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 2945 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || || |||| ||||| || || |||||||| || || | Sbjct 2946 TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCA 3005 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 3006 CGAAGATCTGCATCTT 3021 >seq806 Length=29032 Score = 102 bits (112), Expect = 9e-17 Identities = 144/197 (73%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 17985 CTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGGCCGTCTTCGAGCTGCTTCCCGGCGAA 18044 Query 42077 TATGAGTCGCTGCTGGT-CGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG 42135 || ||||||||||||| |||| || | || ||||||||| ||| || |||| || Sbjct 18045 GATCAGTCGCTGCTGGTCCGGCGGGATCCCT-TCCTTGTCCTGGATCTTGGCCTTGA-CG 18102 Query 42136 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | | | |||||| || || || |||| || || || || |||||||| || || Sbjct 18103 TTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTTATCGTCTTCCCCGTTAGGGTTTTC 18162 Query 42195 ACAAAGATTTGCATTTT 42211 || ||||| ||||| || Sbjct 18163 ACGAAGATCTGCATCTT 18179 >seq25552 Length=2169 Score = 93.3 bits (102), Expect = 5e-14 Identities = 136/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 42019 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| ||||||| ||| || | || || ||||| ||||| ||||| Sbjct 435 CCTTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTACCGGCGAAG 376 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || |||||||| || | || | | || ||||| ||| || ||||| | Sbjct 375 ATCAGACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTG 316 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||| || || || |||| |||||||| ||||||||||| || || || Sbjct 315 TCGATGGTGTCGGAGGACTCGACTTCGAGAGTGATGGTCTTGCCCGTTAGGGTTTTCACG 256 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 255 AAGATCTGCAT 245 >seq37186 Length=985 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| ||||| || ||||| ||||||| || | |||| || | ||| || || ||||| Sbjct 475 CTCTTTTTGGATGTTGTAGTCAGCCAATGTTCTGCCGTCCTCCAACTGTTTCCCGGCGAA 534 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | |||||| |||| || | | ||| |||||| ||| | || | || | ||| Sbjct 535 GATAAGCCTCTGCTGATCGGGAGGGATACCCTCTTTGTCC-TGAATCTTGGCTTTAACGT 593 Query 42137 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| |||||| |||| ||||| || || || || || ||||| | Sbjct 594 TGTCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGATCGTCTTCCCAGTGAGAGTCTTAA 653 Query 42196 CAAAGATTTGCATTTTCAC 42214 | ||||||||||| | ||| Sbjct 654 CGAAGATTTGCATCTGCAC 672 >seq7348 Length=9517 Score = 89.7 bits (98), Expect = 6e-13 Identities = 147/208 (71%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| || | || |||||| || || ||||| || || ||||| || | || || Sbjct 206 CACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGACCATCCTC 147 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| |||||||| ||||| ||||||||||| | || | | ||||||||| Sbjct 146 GAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTG 87 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 42174 ||| || || | ||| | | | ||||| |||| || || || | ||||||| Sbjct 86 GATCTTAGCCTTCA-CGTTGTCAATGGTGTCGGAGCTC---TCAACTTCCAATGTGATGG 31 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGAT 42202 | ||||| || || ||||| || ||||| Sbjct 30 TCTTGCCGGTAAGAGTCTTCACGAAGAT 3 >seq20570 Length=3172 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || | || |||||||||||| || | || |||||| || || ||||| ||||| Sbjct 291 ACCACCACGTAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGC 350 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | | |||| || | |||||| || ||||| || || | |||||| || | || Sbjct 351 CAAGGTTCTCCCGTCCTCCAACTGCTTTCCTGCGAAGATAAGCCTCTGCTGATCCGGAGG 410 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | | ||||||||| || | || | | | ||| | | | ||||| ||| || Sbjct 411 AATCCCTTCCTTGTCC-TGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGCT---TT 466 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| |||| ||||| || || || || || || || || ||||| ||||| Sbjct 467 CCACCTCGAGGGTGATTGTCTTTCCTGTGAGAGTTTTCACGAAGATCTGCAT 518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542773259362880