Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq7912 96.9 2e-15
seq14782 95.1 9e-15
seq11485 95.1 9e-15
seq4396 95.1 9e-15
seq3667 87.8 1e-12
seq24793 86.0 4e-12
seq12662 86.0 4e-12
>seq7912
Length=9007
Score = 96.9 bits (106), Expect = 2e-15
Identities = 161/231 (70%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||| || | || | ||| | |||||| ||||| || ||||| |||||||| ||
Sbjct 6562 TGCCACCACGAAGCCTGAGAACGAGATGAAGCGTAGACTCCTTTTGGATGTTGTAGTC-- 6619
Query 15008 TGAGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065
|| ||| ||| ||||||| | || ||||| ||| | || | | ||| || |||
Sbjct 6620 TGCCAATGTTCTGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGATCGGG 6679
Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125
|| || ||||||||||| ||| ||| ||| || | || || || ||| ||||
Sbjct 6680 AGGGATACCTTCCTTGTCCTGAATCTTGGCTTTGACGTTGTCGATTGTGTCGGAGCTTTC 6739
Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || | ||| ||||| || || || ||||| || || || || |||||
Sbjct 6740 CACCTCGAGGGTGATGGTCTTTCCCGTGAGAGTCTTAACGAAGATCTGCAT 6790
>seq14782
Length=4961
Score = 95.1 bits (104), Expect = 9e-15
Identities = 145/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
||||| || || || || || ||||||||||| ||| | || ||||||| | ||
Sbjct 1993 TGAAGAGTCGACTCCTTCTGGATGTTGTAATCCGCGAGGGTCCTTCCGTCTTCCAGCTGC 2052
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| || ||| | |||| |||||| ||||| ||| || ||||||||||| ||| |||
Sbjct 2053 TTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCCTGAATCTTG 2112
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
|| ||| | || || || ||| ||| || |||| ||| || || || || ||
Sbjct 2113 GCCTTGACATTGTCGATCGTGTCGGATGATTCGACCTCTAGGGTTATCGTCTTCCCCGTT 2172
Query 15154 AGAGTTTTTACAAAAATTTGCATATTT 15180
|| ||||| || || || ||||| |||
Sbjct 2173 AGGGTTTTCACGAAGATCTGCATTTTT 2199
>seq11485
Length=6519
Score = 95.1 bits (104), Expect = 9e-15
Identities = 146/206 (71%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
|||||| ||||| || || || || |||||||| || | | | || || | ||
Sbjct 4909 ATGAAGCGTAGACTCCTTCTGAATATTGTAATCCGCAAGCGTGCGTCCATCCTCAAGCTG 4850
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091
||| |||||| | || | | ||| ||||| ||||||||||||||||| || ||
Sbjct 4849 TTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTT 4790
Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151
||| ||| ||| | || ||||| ||| | || || || || || ||||| || ||||
Sbjct 4789 TGC-TTTCACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCTG 4731
Query 15152 TCAGAGTTTTTACAAAAATTTGCATA 15177
||| ||| || |||||||| ||||||
Sbjct 4730 TCAAAGTCTTGACAAAAATCTGCATA 4705
Score = 87.8 bits (96), Expect = 1e-12
Identities = 144/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
||| || || || || || || |||||||||||| || | | ||||||||| ||
Sbjct 4681 ATGGAGAGTTGACTCCTTCTGGATGTTGTAATCGGCCAGGGTGCGTCCGTCTTCTAGCTG 4622
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091
|| |||||| | || | | ||| |||||| || || ||||||||||| || ||
Sbjct 4621 CTTCCCAGCGAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTT 4562
Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151
||| || ||| | |||||||| ||| | || || || | || ||||| || || |
Sbjct 4561 TGCCTTG-ACATTGTCTATAGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGG 4503
Query 15152 TCAGAGTTTTTACAAAAATTTGCAT 15176
| || ||||| || |||||||||||
Sbjct 4502 TGAGTGTTTTCACGAAAATTTGCAT 4478
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| || ||||| ||||| || || || ||||||||||| | | | | | || ||
Sbjct 5143 AACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCCAAAGTCCGACCATCCTC 5084
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
| ||||| |||||| | || | | ||| ||||| || || |||||||||||
Sbjct 5083 GAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTG 5024
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
||| || ||| ||| | || || || || | || || || | ||||||||||||
Sbjct 5023 AATCTTCGCTTTCACATTGTCGATCGTGTCAGAGCTCTCCACTTCAAGGGTAATGGTTTT 4964
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
||| || || || || || ||||| ||||||
Sbjct 4963 ACCGGTGAGTGTCTTGACGAAAATCTGCATA 4933
>seq4396
Length=13502
Score = 95.1 bits (104), Expect = 9e-15
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008
||||| |||| | ||| || || |||||||| || ||||| || ||||||||||| ||
Sbjct 12717 CCACCACGCAGACGTAACACCAAGTGAAGGGTTGACTCTTTCTGAATGTTGTAATCAGCC 12658
Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068
|| | | | || || | || ||||||||| | || | |||||| ||||| |||
Sbjct 12657 AAG-GTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGG 12599
Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128
|| || |||||||| ||| ||| || || | || || || ||| | || ||
Sbjct 12598 GATCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCCAC 12539
Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| || || || || || || ||||| || || |||||||| ||||||
Sbjct 12538 CTCCAAAGTGATAGTCTTCCCGGTCAGTGTCTTAACAAAAATCTGCATA 12490
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | || | || | ||||||||| || |||||||| |||||||| || |
Sbjct 12057 CCACCACGGAGCCTGAGGACAAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCAGCG 11998
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| | | | | ||||| | ||| || || ||| | || | | ||| || || |||
Sbjct 11997 AGAGTACGCCCATCTTCAAGTTGCTTCCCGGCGAAGATAAGCCTCTGCTGATCCGGGGGA 11938
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| ||||||||||| ||| ||| ||| || | || || || || |||| ||
Sbjct 11937 ATGCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTGTCGATGGTGTCTGAGCTTTCCACC 11878
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180
|| | ||| || || || || || ||||| || || || || ||||| |||
Sbjct 11877 TCGAGGGTGATCGTCTTTCCGGTGAGAGTCTTAACGAATATCTGCATCTTT 11827
>seq3667
Length=14967
Score = 87.8 bits (96), Expect = 1e-12
Identities = 144/208 (69%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| || ||||| || || || |||||||| ||| ||| | | | |||| || | |||
Sbjct 5519 TGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTGT 5578
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| || ||| | |||| ||||| ||||| || || ||||||||||| || |||
Sbjct 5579 TTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTG 5638
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
||| ||| | || || || ||| | ||| || || | ||| || || || || ||
Sbjct 5639 GCTTTGACATTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATCGTCTTCCCCGTT 5698
Query 15154 AGAGTTTTTACAAAAATTTGCATATTTG 15181
|| ||||| || || || ||||| ||||
Sbjct 5699 AGGGTTTTCACGAAGATCTGCATCTTTG 5726
>seq24793
Length=2311
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | || | ||| | ||||||||| || || || || ||||||||||| |
Sbjct 1615 CCACCACGGAGCCTGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGCG 1674
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| | || |||| || | || || || ||| | || | | ||| || || |||
Sbjct 1675 AGAGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGGGGA 1734
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| || |||||||| ||| ||| ||| || | || || || || |||| ||
Sbjct 1735 ATGCCCTCCTTGTCCTGAATCTTGGCTTTAACGTTGTCGATGGTGTCTGAGCTTTCCACC 1794
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | ||| || || || || || ||||| || |||||||| |||||
Sbjct 1795 TCGAGGGTGATTGTCTTTCCCGTGAGAGTCTTAACAAAAATCTGCAT 1841
>seq12662
Length=5898
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | || | ||| | ||||||||| || || || || ||||||||||| |
Sbjct 3487 CCACCACGGAGCCTGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGCG 3428
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| | || |||| || | || || || ||| | || | | ||| || || |||
Sbjct 3427 AGAGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGGGGA 3368
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| || |||||||| ||| ||| ||| || | || || || || |||| ||
Sbjct 3367 ATGCCCTCCTTGTCCTGAATCTTGGCTTTAACGTTGTCGATGGTGTCTGAGCTTTCCACC 3308
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | ||| || || || || || ||||| || |||||||| |||||
Sbjct 3307 TCGAGGGTGATTGTCTTTCCCGTGAGAGTCTTAACAAAAATCTGCAT 3261
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357110045856620
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