Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq6139 563 1e-155 seq43812 443 3e-119 seq18917 250 3e-61 seq12239 185 1e-41 seq4821 98.7 1e-15 seq10427 93.3 5e-14 seq10249 93.3 5e-14 seq293 91.5 2e-13 seq49459 82.4 9e-11 >seq6139 Length=10899 Score = 563 bits (624), Expect = 1e-155 Identities = 735/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| | || || ||||| |||| || ||||||||| || ||||| Sbjct 6088 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 6029 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| || || | |||||| || || || || || || |||||||| ||| Sbjct 6028 TGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAAAGTC 5969 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || ||||| |||||||| | ||| || || ||||| |||||||| || | ||| Sbjct 5968 TCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 5909 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 || | || ||||| | | |||| | |||| | ||| | || || ||||| Sbjct 5908 TTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACTGGTACAAAT 5849 Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562 | |||||||||||||| |||||| |||||| || || | |||||||| || ||||| Sbjct 5848 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGACCAA 5789 Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622 || || ||||| |||||||| ||||| || || || |||| || || | ||| || | Sbjct 5788 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGCACGG 5729 Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682 || ||||||| |||||||||||||| |||||||| |||||||||||||| |||||| Sbjct 5728 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 5669 Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742 || || | || || | || | | ||| || || |||||||||||||| ||||| | Sbjct 5668 GCGCATAACAGAGCCGCGCCCAGTACACCAGCGACTCCCATCATATGAAATGGGTTCAAT 5609 Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802 ||||| || || || || || | ||||| | ||| || ||||| || || |||||||| Sbjct 5608 GTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACACCAAAA 5549 Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862 |||||||||||||||| || || || || ||||| || ||||||||||| ||||| Sbjct 5548 CTAGGCGCAAAGAACCAACCCGATTGACCTAGTGGATAAATTAGAAAGACAGAAACAAAA 5489 Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGC 6921 |||||||| |||||||| || ||||||||||| || || || | | || ||| || || Sbjct 5488 ACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACAGATCGAGC 5430 Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981 | ||||| || || | ||| |||||||| | || || || |||||||| || ||||| Sbjct 5429 AAGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCACCGTGGAGAGCAACAAA 5370 Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041 || ||| || || || | ||| ||| || |||||||| || ||||| |||||||| Sbjct 5369 AGCCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCA 5310 Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101 || | | | ||||| | | | | ||||||||| || || ||||| || | || Sbjct 5309 CAGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCAGCGGTTAAAAA 5250 Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161 ||| || || || | ||| ||| ||| | || ||||| ||||| || || || || Sbjct 5249 ATTGCAACCTTCTAAATAGGAACTAGCCAATCCATGAGTATACCATGAAGTTACAAAGGT 5190 Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221 ||| || |||| |||||| |||| || | || ||| ||| || || | ||||| || Sbjct 5189 TGTACCTGTGAACCAACCCCCCAAAGCGAAATAGGCACAAGGAAAGAGCAATAGACCAGA 5130 Query 7222 CCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275 |||||| ||||||||||| | || | | | ||||||||| | | |||||| Sbjct 5129 CCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 5076 >seq43812 Length=736 Score = 443 bits (490), Expect = 3e-119 Identities = 443/575 (77%), Gaps = 0/575 (0%) Strand=Plus/Minus Query 7528 CTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCAT 7587 |||| ||||||| ||||| ||||||||||||||||||||||| || ||||| |||||||| Sbjct 575 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 516 Query 7588 GCCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATC 7647 ||||| ||||||||| | | || ||||| || || | ||||| ||||||| ||| Sbjct 515 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATC 456 Query 7648 AATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAG 7707 || | || |||||||| |||||||| || |||||||| ||||| || |||| ||| | Sbjct 455 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAA 396 Query 7708 AGCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGA 7767 |||||| ||||| || || || || ||||| || || | |||||| || | ||||| || Sbjct 395 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 336 Query 7768 GTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGAT 7827 |||||||| ||| ||||||||||||| || ||||| || ||||||||||| || || Sbjct 335 ATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAAT 276 Query 7828 GTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGT 7887 |||||| || ||||||||||||||||| | || || | || || ||| || || Sbjct 275 GTTGTAAGTTTCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATTTTCTGT 216 Query 7888 GGTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACC 7947 |||||| | | || | ||| ||||| | ||||||||||| ||||| || || || || Sbjct 215 GGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCC 156 Query 7948 ACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGC 8007 || || |||||||| || || | |||||| || |||||||| || ||||||||||| || Sbjct 155 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 96 Query 8008 TTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAA 8067 ||||| |||| ||| ||||||| ||||||||||| || ||||||||| | ||||| || Sbjct 95 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 36 Query 8068 AGAACCTTGACCGAAAGGATAGACGAGGAATACAG 8102 | |||||||| | || |||| | ||| |||| Sbjct 35 ACTTCCTTGACCAATTGGGTAGATCAAGAAAACAG 1 >seq18917 Length=3610 Score = 250 bits (276), Expect = 3e-61 Identities = 303/413 (73%), Gaps = 0/413 (0%) Strand=Plus/Minus Query 8108 GCTGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAA 8167 || || ||||| ||||| || ||||| ||| ||||| ||||||||||| |||||| || Sbjct 3605 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 3546 Query 8168 GAAAGTTCCCACTCACGACCCATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACG 8227 ||||||||||||||||||||| || | | ||| | | ||||| | | || Sbjct 3545 CTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATT 3486 Query 8228 AGTTGGAAAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGA 8287 |||| |||||||||||||||| ||||| ||||||| || || ||||||||||| ||| Sbjct 3485 AGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGA 3426 Query 8288 TAGAAGTGGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTG 8347 || || || | ||||||||| ||||| ||||| || ||||| || || || ||||| Sbjct 3425 TAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTT 3366 Query 8348 CCATACATGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCA 8407 || || | || || |||| || |||||||| || || ||||| || || ||||||||| Sbjct 3365 CCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCA 3306 Query 8408 GCGACGAAAGCGACGATGAAACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACA 8467 || | ||| |||| || ||| || || | | | ||||||||||||| ||| Sbjct 3305 GCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGAATCATCAAAACA 3246 Query 8468 CCGAACCAACCGACATACAGACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 || ||||| || | || ||||| || | ||| |||| |||||||||||| Sbjct 3245 CCAAACCATCCAATGTAAAGACGGTTTTCGGTACTAGTTATCCAGTTACAGAA 3193 >seq12239 Length=6102 Score = 185 bits (204), Expect = 1e-41 Identities = 379/558 (68%), Gaps = 4/558 (1%) Strand=Plus/Plus Query 6719 CCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAG 6778 ||||||||||| | |||| | ||||| || | || | || | ||||| | ||| Sbjct 69 CCCATCATATGTAGATGGTTCAATGTCCAATTATAAAACTCTTGGAAAAAGAGGATGAAC 128 Query 6779 CGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGA 6838 || ||||| | || |||||||| || ||||||||||||| || || || ||||| Sbjct 129 CGAAATATAACCGCTACACCAAAACTAGGTGCAAAGAACCAACCAGATTGACCT-GAGGA 187 Query 6839 TACATGAGAAAGACAGACACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAG 6898 || || |||||| ||| | ||| ||||||| |||||||| || ||||||||||| || Sbjct 188 TAAATTAGAAAGGCAGGAATAAAACCAGCAATTGGACCAGAGAATGCGATTGCATTATAA 247 Query 6899 GGACGAATACCGACTAGA-CGTGCGATCTCAAACTGCCGAAGCATGAAACCTATAAGGGC 6957 || | | | || ||| || || | ||||| || || | ||| |||||||| | || Sbjct 248 GGTCACA-ATTGAACAGATCGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAATGC 306 Query 6958 AAAGGCTCCGTGGAGCGCCACAAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAA 7017 || || | |||||| | |||||| ||| || || | ||| ||| || || Sbjct 307 GAAAGCACTGTGGAGAGAAACAAAAACCCACAGGCCGTTTAATTGACACCAACGACTAAA 366 Query 7018 ATCTCCCTGAGCTTCTGGACCCCATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGG 7077 |||||| || ||||| ||||| | || | | | ||||| | | | | |||||| Sbjct 367 ATCTCCTTGTGCTTCATGACCC-ACAGTAATAACAAAGAATGCGCTAAACTATTAGCAGG 425 Query 7078 AGTTGATACAGCAGCAGTAAGGAAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTG 7137 ||| || || ||| | || | | | | || || || | ||| || ||| | || || Sbjct 426 AGTAGAAACTGCATCGGTTAAAAGACTGCAACCTTCTAAATAGAAACTAGCCAATCCATG 485 Query 7138 AGTGTACCAGCTCGTGACGAAAGTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGC 7197 | | ||||| || || || ||||| || |||| |||||| |||| || | || || Sbjct 486 AATATACCATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCCAAAGCGAAATAGGC 545 Query 7198 AGTAGGGAACAGAAGAAGACCTGACCAACCAACAAAAACGAACCTATCACGCTTAAGCCA 7257 | ||| || || | ||||| |||||||| ||||||||||| | || | | | ||| Sbjct 546 ACAAGGAAAGAGCAATAGACCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCA 605 Query 7258 GTCATCGAGTACATCAAA 7275 |||||| | | |||||| Sbjct 606 GTCATCAATAATATCAAA 623 >seq4821 Length=12785 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 10249 GTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC 10308 || ||||||| |||| || |||| ||| || || | |||||||||||||| ||||| Sbjct 11004 GTAGGATAAGCCGCACAAGTGAGAACGAATCCTTCAGCAATCTGGTCATCATCGAGGAAA 11063 Query 10309 GATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCA 10368 || || || || || | || || | | ||| || ||||| ||||| || | | Sbjct 11064 CTCTGGTCAGACTGGTCAACAGATCCAGACACAACTTTACCGGCACAGCTCGAGCAAGAA 11123 Query 10369 CCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTAC 10428 ||||| ||||| ||||| | |||||| |||||||| |||||||| || || | ||| Sbjct 11124 CCAGCACGGCAAGAGTAAGGCAAGTCAATTCCTGCTTCCTCAGCAGCGTCGAGGACGTAG 11183 Query 10429 TGATCGTCAGCACACTCAA 10447 ||||| | ||||||| Sbjct 11184 ACGTCGTCGTCGCACTCAA 11202 >seq10427 Length=7142 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 10249 GTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC 10308 || ||||||| |||| || |||| ||| || || | |||||||||||||| ||||| Sbjct 1340 GTAGGATAAGCCGCACAAGTGAGAACGAATCCTTCAGCAATCTGGTCATCATCGAGGAAA 1399 Query 10309 GATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCA 10368 || || || || || | || || | | ||| || ||||| ||||| || | | Sbjct 1400 CTCTGGTCAGACTGGTCAACTGATCCAGACACAACTTTACCGGCACAGCTCGAGCAAGAA 1459 Query 10369 CCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTAC 10428 ||||| ||||| ||||| | ||| || |||||||| |||||||| || || | ||| Sbjct 1460 CCAGCACGGCAAGAGTAAGGCAAGTCGATTCCTGCTTCCTCAGCAGCGTCGAGGACGTAG 1519 Query 10429 TGATCGTCAGCACACTCAA 10447 ||||| | ||||||| Sbjct 1520 ACGTCGTCGTCGCACTCAA 1538 >seq10249 Length=7246 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 10249 GTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC 10308 || ||||||| |||| || |||| ||| || || | |||||||||||||| ||||| Sbjct 5816 GTAGGATAAGCCGCACAAGTGAGAACGAATCCTTCAGCAATCTGGTCATCATCGAGGAAA 5757 Query 10309 GATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCA 10368 || || || || || ||||| || | | ||| ||||| || ||||| || | | Sbjct 5756 CTCTGGTCAGACTGGTCAACGGTACCAGACACAACTTTACCTGCGCAGCTCGAGCAAGAA 5697 Query 10369 CCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTAC 10428 || || ||||| ||||| | ||| || |||||||| || ||||| || || | ||| Sbjct 5696 CCGGCACGGCAAGAGTAAGGCAAGTCGATCCCTGCTTCCTCCGCAGCGTCGAGGACGTAA 5637 Query 10429 TGATCGTCAGCACACTCAA 10447 ||||| | ||||||| Sbjct 5636 ACGTCGTCGTCGCACTCAA 5618 >seq293 Length=39549 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 8246 TTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATA 8305 ||||| ||||| ||| ||| | | || ||||||||||| | ||| || || | ||||||| Sbjct 26182 TTGTATAGCCATTCACCAACAAATGCAGCTTCCCAGATTGAATAAAAATGCAAACCAATA 26123 Query 8306 GCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCA 8365 || |||||| | ||| || ||||| || || || | ||| ||||| | || | | | Sbjct 26122 GCTGTAGAAGTATGAATAATGGCACCTGAAATAATATCGTTTCCATAAAGAAGATATCGA 26063 Query 8366 GCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATG 8425 | | ||||||| || || |||| || || ||||||||| | ||| |||| || Sbjct 26062 GAAATAGGTTCACAAATACCACCAATATCTACTAAAGGAGCAGCAATGAATGCGATAATA 26003 Query 8426 AAA 8428 ||| Sbjct 26002 AAA 26000 >seq49459 Length=611 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 7994 ATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGC 8053 ||||||||||| || ||||| |||| ||| ||||||| ||||||||||| || |||||| Sbjct 562 ATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGC 503 Query 8054 ATAGCGTCAGAGAAA 8068 ||| | ||||| ||| Sbjct 502 ATACCATCAGAAAAA 488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621621407718080