Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq549 141 1e-28
seq12321 125 9e-24
seq13279 86.0 8e-12
>seq549
Length=32968
Score = 141 bits (156), Expect = 1e-28
Identities = 198/275 (72%), Gaps = 7/275 (3%)
Strand=Plus/Minus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
|||||| || ||||| | ||||| || || || |||||| ||||| |||||||| ||
Sbjct 20325 GTGGAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGCCC 20266
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
|||||||||| |||||| |||| || || ||| |||||||||||||| ||||| ||
Sbjct 20265 ACGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTGCCCGAGAAGAAGATCCCTTCCACGCA 20206
Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710
|||||||| | | | |||||| |||| | | | ||| | |||||||| ||
Sbjct 20205 AGCGAACGCCACGATCCTCTCGGCGAAGGCCTGAGGC---CCATCGATCCACTTCAAGGC 20149
Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770
||| || |||||||||| | || |||| |||| |||||| ||||| | | | |
Sbjct 20148 CCATTGGGCCTTTTTCTTTACGCAAGGGATCGTCTCGATCGCGCGGAAGAGATGGTCCCT 20089
Query 127771 TTC--TGATGGATCTTTGATGTACTTATCTATGAG 127803
|| || || ||||||||||| | |||| |||
Sbjct 20088 CTCCTTGTTG--TCTTTGATGTAAGTGTCTAAGAG 20056
>seq12321
Length=6064
Score = 125 bits (138), Expect = 9e-24
Identities = 187/263 (71%), Gaps = 7/263 (3%)
Strand=Plus/Minus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
||| || |||||||| | |||||||| || || |||||| |||||| |||||||| ||
Sbjct 1373 GTGAAGCCCCTCGTCTCTCGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGCCC 1314
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
|||||||| | |||||| |||| || || || |||||||||||||| || || ||
Sbjct 1313 ACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCA 1254
Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710
||||| || | | | ||| || || | | || | || | ||||||||| ||
Sbjct 1253 GGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 1197
Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770
||| || ||||| ||| ||| || |||| ||||| ||| || ||||| | | | |
Sbjct 1196 CCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGGCCCGGAAGAGGTGGTCCCT 1137
Query 127771 TTC--TGATGGATCTTTGATGTA 127791
|| || || |||||||||||
Sbjct 1136 CTCCTTGTTG--TCTTTGATGTA 1116
>seq13279
Length=5599
Score = 86.0 bits (94), Expect = 8e-12
Identities = 196/293 (67%), Gaps = 18/293 (6%)
Strand=Plus/Minus
Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761
|| ||||| |||||||| | || | |||| |||||| |||||| | || || ||
Sbjct 917 CGGTCAAAACGACCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTGGTTGCA 858
Query 12762 GCGATGACAACGATGCCCGTCTCGTTA---TCGAAGCCATCCATCTCAGTCAAGAGTTGA 12818
|| | |||| | || || |||| || || |||||||||||||||||||| |||
Sbjct 857 GCAACCACAATAACACCAGT---GTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGA 801
Query 12819 TTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACC---CGCACTGCGT---TGC 12872
|| | || || || | ||||||||| | ||||| | || | | | |||
Sbjct 800 TTAAGCGTCTGCTCTCTCTCATCATTCCC------TCCACCGATCCCAGTCCCTCTCTGC 747
Query 12873 TTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACT 12932
|||| || || ||||| ||||| | || || || || || ||| || || |
Sbjct 746 CTACCAACAGCATCAATCTCGTCCACAAAGACAATGCAAGGAGCATTCTCCTTAGCCTTT 687
Query 12933 TCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985
| || | ||| || || ||| ||||| ||||||||||||||||| || ||
Sbjct 686 TTGAAAAGATCACGGACCCTCGAAGCACCAACACCCACAAACATCTCAACGAA 634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613010780649120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |