Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq549 141 1e-28 seq12321 125 9e-24 seq13279 86.0 8e-12 >seq549 Length=32968 Score = 141 bits (156), Expect = 1e-28 Identities = 198/275 (72%), Gaps = 7/275 (3%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| || ||||| | ||||| || || || |||||| ||||| |||||||| || Sbjct 20325 GTGGAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGCCC 20266 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||||| |||||| |||| || || ||| |||||||||||||| ||||| || Sbjct 20265 ACGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTGCCCGAGAAGAAGATCCCTTCCACGCA 20206 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 |||||||| | | | |||||| |||| | | | ||| | |||||||| || Sbjct 20205 AGCGAACGCCACGATCCTCTCGGCGAAGGCCTGAGGC---CCATCGATCCACTTCAAGGC 20149 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 ||| || |||||||||| | || |||| |||| |||||| ||||| | | | | Sbjct 20148 CCATTGGGCCTTTTTCTTTACGCAAGGGATCGTCTCGATCGCGCGGAAGAGATGGTCCCT 20089 Query 127771 TTC--TGATGGATCTTTGATGTACTTATCTATGAG 127803 || || || ||||||||||| | |||| ||| Sbjct 20088 CTCCTTGTTG--TCTTTGATGTAAGTGTCTAAGAG 20056 >seq12321 Length=6064 Score = 125 bits (138), Expect = 9e-24 Identities = 187/263 (71%), Gaps = 7/263 (3%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || |||||||| | |||||||| || || |||||| |||||| |||||||| || Sbjct 1373 GTGAAGCCCCTCGTCTCTCGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGCCC 1314 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| |||| || || || |||||||||||||| || || || Sbjct 1313 ACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCA 1254 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 ||||| || | | | ||| || || | | || | || | ||||||||| || Sbjct 1253 GGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 1197 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 ||| || ||||| ||| ||| || |||| ||||| ||| || ||||| | | | | Sbjct 1196 CCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGGCCCGGAAGAGGTGGTCCCT 1137 Query 127771 TTC--TGATGGATCTTTGATGTA 127791 || || || ||||||||||| Sbjct 1136 CTCCTTGTTG--TCTTTGATGTA 1116 >seq13279 Length=5599 Score = 86.0 bits (94), Expect = 8e-12 Identities = 196/293 (67%), Gaps = 18/293 (6%) Strand=Plus/Minus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || ||||| |||||||| | || | |||| |||||| |||||| | || || || Sbjct 917 CGGTCAAAACGACCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTGGTTGCA 858 Query 12762 GCGATGACAACGATGCCCGTCTCGTTA---TCGAAGCCATCCATCTCAGTCAAGAGTTGA 12818 || | |||| | || || |||| || || |||||||||||||||||||| ||| Sbjct 857 GCAACCACAATAACACCAGT---GTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGA 801 Query 12819 TTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACC---CGCACTGCGT---TGC 12872 || | || || || | ||||||||| | ||||| | || | | | ||| Sbjct 800 TTAAGCGTCTGCTCTCTCTCATCATTCCC------TCCACCGATCCCAGTCCCTCTCTGC 747 Query 12873 TTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACT 12932 |||| || || ||||| ||||| | || || || || || ||| || || | Sbjct 746 CTACCAACAGCATCAATCTCGTCCACAAAGACAATGCAAGGAGCATTCTCCTTAGCCTTT 687 Query 12933 TCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 | || | ||| || || ||| ||||| ||||||||||||||||| || || Sbjct 686 TTGAAAAGATCACGGACCCTCGAAGCACCAACACCCACAAACATCTCAACGAA 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613010780649120