Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq549 158 2e-33
>seq549
Length=32968
Score = 158 bits (174), Expect = 2e-33
Identities = 544/838 (65%), Gaps = 18/838 (2%)
Strand=Plus/Minus
Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707
|||||||||| || || || || |||| | || || | ||||| | | || || |
Sbjct 20611 TCTTCTCGAAGAAATTCGTTTTACCCTGAAGCGAGATCAACTCCATCCAATCAAAAGGAT 20552
Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767
|| ||| || |||| | ||||| ||| ||| | ||| || ||||| || |
Sbjct 20551 TCGCCACACCGTACACCTTCCCGCACCCGAGCGCCCCCAAAAGCCTATCCGCCACGAACT 20492
Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-CTAACGGGGAGCGCTTCC 159826
| || || || |||| ||| | ||| ||||||| || | | ||||| ||||| ||
Sbjct 20491 CAATATACTGACTCATCAACTCCCGGTTCATCCCCACCAACGCGCACGGG-AGCGCGTCG 20433
Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTAC 159886
||| ||||||| |||| ||||| ||||| ||| ||| ||| | || || || | |
Sbjct 20432 CACACAAACTCCCTCTCGATCTCCACCGCGTCGCACACGATCGACCTCACGCGCTCCTCC 20373
Query 159887 CCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCC 159946
|||| | || | || | | |||| ||||| ||||||||||| || ||
Sbjct 20372 GAGAGCTTCGTCCTAAGGAGGGAGTAGATCAGG---CACGCGAAGTCGCAGTGGAGGCCT 20316
Query 159947 TCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTG 160006
||||| | ||||| | ||||||||| | | |||| |||||||||| ||||||| ||
Sbjct 20315 TCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGCCCACGCTTCTTC 20256
Query 160007 AGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGC 160065
||||| || || | ||| |||| | | | || |||||||| |||||| || |||||
Sbjct 20255 AGCCAGAAGATCG-AGCAGAAGCTGCCCGAGAAGAAGATCCCTTCCACGCAAGCGAACGC 20197
Query 160066 CACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125
||||| |||||| | | |||| | | ||| | ||||| | |||||||| ||
Sbjct 20196 CACGATCCTCTCGGCGA---AGGCCTGAGGCCCATCGATCCACTTCAAGGCCCATTGGGC 20140
Query 160126 CTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCAC 160185
||| || | ||| || || ||||| ||| || | |||| ||||||
Sbjct 20139 CTTTTTCTTTACGCAAGGGATCGTCTCGATCGCGCGGAAGAGATGGTCCCTCTCCTTGTT 20080
Query 160186 ATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGC 160245
|| ||||| ||| | | || |||||| || | ||| | || ||||| ||
Sbjct 20079 GTCTTTGATGTAAGTGTCTAAGAGGAGACTGTACATCTCGGAGTGGATGTTCTCGATCGC 20020
Query 160246 CATCTGAAAGTTGTAGAAATATGTCGCCTC-CAGATACTGCACCTCCTGTGTGAACCTTT 160304
||||| ||| |||||| ||||| ||| ||| || || |||| |
Sbjct 20019 GATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGAGA-CCTGGACGTCGGACATGAAACGGG 19961
Query 160305 GACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGA 160364
| ||||| | || | |||||||| ||| || ||||| || | ||||| ||
Sbjct 19960 AGGCGAGATTCTCGAGGACGATCCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGTTTGA 19901
Query 160365 TGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT---GTGTCACGTCTTGGGCCA 160421
||| |||| |||| | | |||||| | | ||||||| | || |||||||| |
Sbjct 19900 CGAAGTGTCGCTCGCCGTCGTTGAGGTTTTGCTCCCAGTCGCGGGT---GTCTTGGGAGA 19844
Query 160422 AATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479
|| || || || ||| |||| || || | || | |||||||| |||||||
Sbjct 19843 GGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCTTTCTTGTACATCTCCCAGAT 19786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 794511800169920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |