Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq549 158 2e-33 >seq549 Length=32968 Score = 158 bits (174), Expect = 2e-33 Identities = 544/838 (65%), Gaps = 18/838 (2%) Strand=Plus/Minus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 |||||||||| || || || || |||| | || || | ||||| | | || || | Sbjct 20611 TCTTCTCGAAGAAATTCGTTTTACCCTGAAGCGAGATCAACTCCATCCAATCAAAAGGAT 20552 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 || ||| || |||| | ||||| ||| ||| | ||| || ||||| || | Sbjct 20551 TCGCCACACCGTACACCTTCCCGCACCCGAGCGCCCCCAAAAGCCTATCCGCCACGAACT 20492 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-CTAACGGGGAGCGCTTCC 159826 | || || || |||| ||| | ||| ||||||| || | | ||||| ||||| || Sbjct 20491 CAATATACTGACTCATCAACTCCCGGTTCATCCCCACCAACGCGCACGGG-AGCGCGTCG 20433 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTAC 159886 ||| ||||||| |||| ||||| ||||| ||| ||| ||| | || || || | | Sbjct 20432 CACACAAACTCCCTCTCGATCTCCACCGCGTCGCACACGATCGACCTCACGCGCTCCTCC 20373 Query 159887 CCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCC 159946 |||| | || | || | | |||| ||||| ||||||||||| || || Sbjct 20372 GAGAGCTTCGTCCTAAGGAGGGAGTAGATCAGG---CACGCGAAGTCGCAGTGGAGGCCT 20316 Query 159947 TCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTG 160006 ||||| | ||||| | ||||||||| | | |||| |||||||||| ||||||| || Sbjct 20315 TCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGCCCACGCTTCTTC 20256 Query 160007 AGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGC 160065 ||||| || || | ||| |||| | | | || |||||||| |||||| || ||||| Sbjct 20255 AGCCAGAAGATCG-AGCAGAAGCTGCCCGAGAAGAAGATCCCTTCCACGCAAGCGAACGC 20197 Query 160066 CACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 ||||| |||||| | | |||| | | ||| | ||||| | |||||||| || Sbjct 20196 CACGATCCTCTCGGCGA---AGGCCTGAGGCCCATCGATCCACTTCAAGGCCCATTGGGC 20140 Query 160126 CTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCAC 160185 ||| || | ||| || || ||||| ||| || | |||| |||||| Sbjct 20139 CTTTTTCTTTACGCAAGGGATCGTCTCGATCGCGCGGAAGAGATGGTCCCTCTCCTTGTT 20080 Query 160186 ATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGC 160245 || ||||| ||| | | || |||||| || | ||| | || ||||| || Sbjct 20079 GTCTTTGATGTAAGTGTCTAAGAGGAGACTGTACATCTCGGAGTGGATGTTCTCGATCGC 20020 Query 160246 CATCTGAAAGTTGTAGAAATATGTCGCCTC-CAGATACTGCACCTCCTGTGTGAACCTTT 160304 ||||| ||| |||||| ||||| ||| ||| || || |||| | Sbjct 20019 GATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGAGA-CCTGGACGTCGGACATGAAACGGG 19961 Query 160305 GACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGA 160364 | ||||| | || | |||||||| ||| || ||||| || | ||||| || Sbjct 19960 AGGCGAGATTCTCGAGGACGATCCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGTTTGA 19901 Query 160365 TGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT---GTGTCACGTCTTGGGCCA 160421 ||| |||| |||| | | |||||| | | ||||||| | || |||||||| | Sbjct 19900 CGAAGTGTCGCTCGCCGTCGTTGAGGTTTTGCTCCCAGTCGCGGGT---GTCTTGGGAGA 19844 Query 160422 AATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 || || || || ||| |||| || || | || | |||||||| ||||||| Sbjct 19843 GGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCTTTCTTGTACATCTCCCAGAT 19786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794511800169920