Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq7912 134 2e-26
seq1045 131 2e-25
seq3667 129 7e-25
seq806 127 2e-24
seq1703 116 4e-21
seq37186 113 5e-20
seq14782 113 5e-20
seq964 113 5e-20
seq11485 111 2e-19
seq4396 109 6e-19
seq20570 107 2e-18
seq12662 107 2e-18
seq23940 105 8e-18
seq6096 105 8e-18
seq24793 104 3e-17
seq7348 102 9e-17
>seq7912
Length=9007
Score = 134 bits (148), Expect = 2e-26
Identities = 162/219 (74%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||||||||| || | ||| ||||||||||||||||||||||| || ||||| |
Sbjct 6119 ACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATATTGTAGTCGGCTAAGGTGCGACC 6178
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || ||||||||||| ||||| || | ||||||||||| | || | | |||||
Sbjct 6179 ATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTT 6238
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554
||| |||||| ||||| | | | ||||| |||| ||||| |||| |||
Sbjct 6239 ATCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTC---TCCACCTCCAACGT 6295
Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||||| ||||| || || || || |||||||| |||||
Sbjct 6296 GATGGTCTTGCCGGTAAGTGTCTTGACAAAGATCTGCAT 6334
Score = 113 bits (124), Expect = 5e-20
Identities = 167/233 (72%), Gaps = 8/233 (3%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
||||||| | | ||||||||||| || | ||| |||||||||||| ||||||||||
Sbjct 6334 TGCCTCCACGCAGACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGG 6393
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
|| ||||| | || || ||||| || || ||||| || | | ||||||||| | |
Sbjct 6394 CTAAGGTGCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGCCTCTGCTGGTCCGGAG 6453
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGAT 46540
| | | ||||||||| |||||| ||||| ||| | | | ||||| ||||
Sbjct 6454 GGATACCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTC--- 6509
Query 46541 TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || |||| || ||||| || || |||| || || |||||||| |||||
Sbjct 6510 TCAACCTCCAAAGTAATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 6562
Score = 105 bits (116), Expect = 8e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||| | ||| |||||||||||| |||||||| | | || | |||| |||
Sbjct 6582 ACGAGATGAAGCGTAGACTCCTTTTGGATGTTGTAGTCTGCCAATGTTCTGCCGTCTTCG 6641
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||||||||| || | | |||||| |||| || | | |||||||||
Sbjct 6642 AGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGATCGGGAGGGATACCTTCCTTGTCCTGA 6701
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||||| |||| ||| | | | |||||| |||||| || | |||||||| ||
Sbjct 6702 ATCTTGGCTTTGA-CGTTGTCGATTGTGTCGGAGCTTTCCACCTCGAGGGTGATGGTCTT 6760
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||||| || || ||||| ||||| |||||
Sbjct 6761 TCCCGTGAGAGTCTTAACGAAGATCTGCAT 6790
>seq1045
Length=26565
Score = 131 bits (144), Expect = 2e-25
Identities = 148/196 (76%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||||| || |||||| |||| |||||||| || ||||||||
Sbjct 2827 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTGTTTCCCGGCGAA 2886
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| ||||||||||| | || | || ||||||||| |||||| ||||| |||
Sbjct 2887 GATCAGCCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 2945
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | |||||| || || || || | ||||| || || ||||| || ||||| |
Sbjct 2946 TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCA 3005
Query 46581 CAAAGATTTGCATTTT 46596
| ||||| ||||| ||
Sbjct 3006 CGAAGATCTGCATCTT 3021
>seq3667
Length=14967
Score = 129 bits (142), Expect = 7e-25
Identities = 148/198 (75%), Gaps = 1/198 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||||| || |||||| |||| |||||||| || ||||||||
Sbjct 5530 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTGTTTCCCGGCGAA 5589
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| ||||||||||| | || | || ||||||||| |||||| |||| |
Sbjct 5590 GATCAGCCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATT 5649
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| ||||| || || | ||||| || || ||||| || ||||| ||
Sbjct 5650 GTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCAC 5709
Query 46582 AAAGATTTGCAT-TTTGC 46598
||||| ||||| |||||
Sbjct 5710 GAAGATCTGCATCTTTGC 5727
>seq806
Length=29032
Score = 127 bits (140), Expect = 2e-24
Identities = 150/199 (75%), Gaps = 3/199 (2%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||||| || ||||| |||| ||||||||||| ||||||||
Sbjct 17985 CTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGGCCGTCTTCGAGCTGCTTCCCGGCGAA 18044
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| ||||||||||| | ||| | | ||||||||| |||||| ||||| |||
Sbjct 18045 GATCAGTCGCTGCTGGTCCGGCGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 18103
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | |||||| || || || || | || || || || ||||| || ||||| |
Sbjct 18104 TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTTATCGTCTTCCCCGTTAGGGTTTTCA 18163
Query 46581 CAAAGATTTGCAT-TTTGC 46598
| ||||| ||||| |||||
Sbjct 18164 CGAAGATCTGCATCTTTGC 18182
>seq1703
Length=21771
Score = 116 bits (128), Expect = 4e-21
Identities = 167/233 (72%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
||||||| | || |||||| |||| || | ||| |||||| ||||||||||| ||||
Sbjct 18822 TGCCTCCACGTAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATATTGTAATCGG 18881
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| ||||| | || ||||||||||| |||||||| || | |||||||| || | |
Sbjct 18882 CCAAGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAG 18941
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543
| | | ||||||||| |||||| ||| ||| | | | |||||| ||||
Sbjct 18942 GGATCCCTTCCTTGTCCTGGATCTT-GGCTTTCACGTTGTCGATGGTGTCGGAGCTTTCC 19000
Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596
|| || | ||||| || || || || || ||||| || ||||||||||| ||
Sbjct 19001 ACCTCGAGGGTGATTGTCTTCCCGGTGAGAGTTTTCACGAAGATTTGCATCTT 19053
Score = 91.5 bits (100), Expect = 2e-13
Identities = 140/196 (71%), Gaps = 8/196 (4%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| |||||||||||||| | | ||||| | || ||||||||||| || |||||
Sbjct 17947 CTCCTTCTGGATATTGTAGTCTGCCAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAA 18006
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||| || | || | | ||||||||| |||||| ||| | |||
Sbjct 18007 GATGAGACGCTGCTGATCCGGAGGGATACCTTCCTTGTCCTGGATCTTAGCCTTCA-CGT 18065
Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577
| | | ||||| |||| || || |||| ||||| || || || || || || |
Sbjct 18066 TGTCAATAGTGTCAGAGCTC---TCAACCTCCAATGTGATAGTCTTCCCGGTAAGAGTCT 18122
Query 46578 TAACAAAGATTTGCAT 46593
| |||||||| |||||
Sbjct 18123 TGACAAAGATCTGCAT 18138
>seq37186
Length=985
Score = 113 bits (124), Expect = 5e-20
Identities = 153/212 (72%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| |||||||| || |||||||||||| |||||||| | ||||| | || | |||
Sbjct 229 ACGAGATGCAAAGTTGACTCCTTTTGGATGTTGTAGTCAGCGAGAGTCCTGCCGACCTCG 288
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|||||||||||||| || ||||| | ||||||||| | || | | ||||||||||
Sbjct 289 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGA 348
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTT 46561
||||| ||||| | | | ||||| |||| ||||| || | ||||||||
Sbjct 349 ATCTTAGCCTTGACATTATCGATGGTGTCCGAGCTC---TCCACCTCGAGAGTGATGGTC 405
Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || || || || || || ||||| |||||
Sbjct 406 TTTCCGGTAAGGGTCTTGACGAAGATCTGCAT 437
Score = 104 bits (114), Expect = 3e-17
Identities = 151/212 (71%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||||| ||| |||||| ||||| |||||||| | | || | |||| ||
Sbjct 1 ACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAATGTTCTGCCGTCTTCA 60
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||||||||| ||||| | ||||||||| | || | | ||||||||| |
Sbjct 61 AGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCTTGG 120
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTT 46561
||||| |||| | | | ||||| |||| ||||| |||| || |||||
Sbjct 121 ATCTTAGCTTTGACATTGTCAATGGTGTCGGAGCTC---TCCACCTCCAAAGTAATGGTC 177
Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||||| |||| || ||||| || || |||||
Sbjct 178 TTGCCGGTCAATGTCTTAACGAAAATCTGCAT 209
>seq14782
Length=4961
Score = 113 bits (124), Expect = 5e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|||||||| | ||| | ||||| || | || |||||| ||||| ||||| || |
Sbjct 1969 CCTCCTCTCAGACGGAGAACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCCGCG 2028
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| || | |||| || |||||||| |||||||| |||| ||||||||||| | ||
Sbjct 2029 AGGGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGG 2088
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| | ||||||||| ||||| ||||| | | | ||||||| ||||| ||
Sbjct 2089 ATCCCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCGGATGATTCGACC 2148
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596
|| | || || || || ||||| || ||||| || ||||| ||||||||
Sbjct 2149 TCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 2198
>seq964
Length=27231
Score = 113 bits (124), Expect = 5e-20
Identities = 167/233 (72%), Gaps = 8/233 (3%)
Strand=Plus/Minus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| ||||| | || | ||| ||||||| ||| ||| || || || |||||||| |
Sbjct 10177 TGCCACCTCTGAGTCGAAGCACAAGATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCAG 10118
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
||| ||||| | || || |||||||| ||||| || || | | ||||||||| | |
Sbjct 10117 CTAGCGTGCGTCCATCCTCCAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCCGGTG 10058
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTC---GCTCGAT 46540
| | | ||| || ||| |||||| ||||| ||| | || | |||| ||||
Sbjct 10057 GGATACCCTCTTTATCCTGGATCTTAGCCTTGA-CGTTGTCAATGGTGTCTGAGCTC--- 10002
Query 46541 TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || |||| ||||||||||| || || || || || ||||||||||||||
Sbjct 10001 TCAACCTCCAAAGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCAT 9949
Score = 98.7 bits (108), Expect = 1e-15
Identities = 154/219 (70%), Gaps = 6/219 (3%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||||||| || || | || |||||| ||||||||||| || | || || || |
Sbjct 10392 ACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCTGCAAGCGTACGACC 10333
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || ||||| || || ||||| || | | ||||||||| | || | | |||||
Sbjct 10332 ATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGTGGGATCCCTTCCTT 10273
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554
|||| ||||| ||||| | | | |||||| |||| ||||| |||| ||
Sbjct 10272 GTCCTGAATCTTAGCCTTGACGTTATCGATCGTGTCAGAGCTC---TCCACCTCCAAAGT 10216
Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||||||||||| || || || || ||||| || |||||
Sbjct 10215 GATGGTTTTGCCAGTGAGGGTCTTCACAAAAATCTGCAT 10177
Score = 89.7 bits (98), Expect = 6e-13
Identities = 147/208 (71%), Gaps = 8/208 (4%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||||||||| |||| | || || | || |||||||| || ||||||||
Sbjct 9684 CTCCTTCTGGATATTGTAATCGGCCAAGGTACGTCCATCCTCGAGCTGTTTACCGGCGAA 9625
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | | ||||||||| | || | | ||||||||| |||||| ||||| |
Sbjct 9624 GATGAGCCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTAGCCTTGACGTT 9565
Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | || || |||| || || || | |||||||| ||||| || || |||||
Sbjct 9564 ATCGATGGTATCGGAGCTC---TCGACTTCGAGAGTGATGGTCTTGCCGGTGAGAGTTTT 9508
Query 46579 AACAAAGATTTGCATTTTGCACAAACAA 46606
|| || ||||||| | |||| ||||||
Sbjct 9507 CACGAAAATTTGCA-TCTGCA-AAACAA 9482
Score = 82.4 bits (90), Expect = 9e-11
Identities = 136/195 (70%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| |||||||||||||| | || ||||| | || || |||||||| || |||||
Sbjct 10596 CTCCTTCTGGATATTGTAGTCAGCAAGCGTGCGACCATCCTCAAGCTGCTTACCAGCGAA 10537
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | | ||| ||||| | || | | ||||||||| || || ||| | |
Sbjct 10536 GATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCCTGAATTTTAGCCTTCACATT 10477
Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | ||||| |||| || || |||| || || || ||||| ||||| || ||
Sbjct 10476 GTCGATTGTGTCTGAGCTC---TCAACTTCCAAGGTAATAGTCTTGCCTGTCAGAGTCTT 10420
Query 46579 AACAAAGATTTGCAT 46593
||||||||||||||
Sbjct 10419 CACAAAGATTTGCAT 10405
>seq11485
Length=6519
Score = 111 bits (122), Expect = 2e-19
Identities = 151/208 (73%), Gaps = 7/208 (3%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| |||| || ||||| |||| || |||||||| || |||||
Sbjct 4669 CTCCTTCTGGATGTTGTAATCGGCCAGGGTGCGTCCGTCTTCTAGCTGCTTCCCAGCGAA 4610
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | | ||||||||||| || | || ||||||||| |||||| ||||| |
Sbjct 4609 GATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATT 4550
Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | ||||| |||| || || || | |||||||| ||||| || || |||||
Sbjct 4549 GTCTATAGTGTCGGAGCTC---TCGACCTCGAGAGTGATGGTCTTGCCGGTGAGTGTTTT 4493
Query 46579 AACAAAGATTTGCATTTTGCACAAACAA 46606
|| || ||||||| | |||| ||||||
Sbjct 4492 CACGAAAATTTGCA-TCTGCAAAAACAA 4466
>seq4396
Length=13502
Score = 109 bits (120), Expect = 6e-19
Identities = 165/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| | | ||||||||||| || | |||| |||||| ||||| || ||||| |
Sbjct 328 CCTCCACGCAGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGGATGTTATAGTCAGCC 269
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| ||||| | || |||||||||||||| ||||| || | ||||||||||| | ||
Sbjct 268 AAGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 209
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542
| | |||||||||| ||||| ||||| ||| | | | ||||| |||| ||
Sbjct 208 ATTCCCTCCTTGTCCTGAATCTTAGCCTTGA-CGTTGTCAATGGTGTCGGAGCTC---TC 153
Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || | ||||| || || || || || || || |||||||| |||||
Sbjct 152 AACTTCGAGGGTGATTGTCTTTCCGGTTAGTGTCTTGACAAAGATCTGCAT 102
Score = 109 bits (120), Expect = 6e-19
Identities = 157/220 (71%), Gaps = 6/220 (3%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
|||||| |||| || | |||| |||||| |||||||||||||| | ||||| | |
Sbjct 545 ACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGGATATTGTAGTCAGCGAGAGTCCTGCC 486
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| ||||||||||| || ||||| || | ||||||||||| | || | | |||||
Sbjct 485 GTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATCCCTTCCTT 426
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554
|| |||||| || | | | | |||||| |||| ||||| |||| ||
Sbjct 425 ATCTTGGATCTTGGCTTTCACGTTATCAATCGTGTCCGAGCTC---TCCACCTCCAGTGT 369
Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|||||| || || |||| || || || ||||||||||||
Sbjct 368 GATGGTCTTACCAGTCAAGGTCTTGACGAAGATTTGCATT 329
Score = 93.3 bits (102), Expect = 5e-14
Identities = 155/220 (70%), Gaps = 8/220 (4%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| ||||||| || | || ||| || || || ||||| || | | ||||| |
Sbjct 12706 ACGTAACACCAAGTGAAGGGTTGACTCTTTCTGAATGTTGTAATCAGCCAAGGTGCGACC 12647
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || ||||||||||| ||||| || | ||||||||||| | || | | ||||||
Sbjct 12646 ATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATCCCCTCCTT 12587
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCG 46553
|||| ||||| ||||| ||| | | | ||||| |||| ||||| |||| |
Sbjct 12586 GTCCTGAATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTC---TCCACCTCCAAAG 12531
Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||| || || || ||||| || |||||||| || |||||
Sbjct 12530 TGATAGTCTTCCCGGTCAGTGTCTTAACAAAAATCTGCAT 12491
>seq20570
Length=3172
Score = 107 bits (118), Expect = 2e-18
Identities = 154/213 (72%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| |||||||| || |||||| ||||| |||||||| | ||||| | | || |||
Sbjct 82 ACGAGATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCG 141
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|| ||||||||||| || ||||| | ||||||||| | || | | |||||| ||| |
Sbjct 142 AGTTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGTGGGATCCCCTCCTTATCCTGG 201
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560
||||| ||| | ||| | | | ||||| |||| ||||| |||| ||||| ||
Sbjct 202 ATCTTAGCCTT-AACGTTGTCAATAGTGTCGGAGCTC---TCCACCTCCAAAGTGATTGT 257
Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || |||| || || |||||||| |||||
Sbjct 258 CTTTCCGGTCAATGTCTTGACAAAGATCTGCAT 290
Score = 86.0 bits (94), Expect = 7e-12
Identities = 160/231 (69%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| || | || ||||||||||| || | ||| |||||| ||||| |||||||| |
Sbjct 292 CCACCACGTAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 351
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| || | | |||| || | |||||| || ||||| || | | |||||| || | ||
Sbjct 352 AAGGTTCTCCCGTCCTCCAACTGCTTTCCTGCGAAGATAAGCCTCTGCTGATCCGGAGGA 411
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542
| | ||||||||| |||||| ||| | ||| | | | ||||| ||| |||
Sbjct 412 ATCCCTTCCTTGTCCTGGATCTTGGCCTT-AACGTTGTCGATGGTGTCAGAGCT---TTC 467
Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| || | ||||| || || || || || ||||| || ||||| |||||
Sbjct 468 CACCTCGAGGGTGATTGTCTTTCCTGTGAGAGTTTTCACGAAGATCTGCAT 518
>seq12662
Length=5898
Score = 107 bits (118), Expect = 2e-18
Identities = 154/213 (72%), Gaps = 8/213 (4%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||||| ||| |||||| ||||| |||||||| | ||||| | |||| ||
Sbjct 3697 ACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCGAGAGTTCTGCCGTCTTCA 3638
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||| ||||| ||||| | ||||||||| | || | | ||||||||| |
Sbjct 3637 AGCTGCTTGCCTGCGAAGATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCTTGG 3578
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560
||||| | ||| ||| | | | ||||| |||| ||||| || | || || ||
Sbjct 3577 ATCTT-TGCTTTGACGTTGTCGATGGTGTCGGAGCTC---TCCACCTCTAGGGTAATCGT 3522
Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| ||||||| || ||||| ||||| |||||
Sbjct 3521 CTTTCCCGTCAAGGTCTTAACGAAGATCTGCAT 3489
Score = 95.1 bits (104), Expect = 1e-14
Identities = 141/196 (72%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| || | ||||| | |||| ||||||||||| ||||||||
Sbjct 3452 CTCCTTCTGGATGTTGTAATCAGCGAGAGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 3393
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | | |||||| || | || | || |||||||||| ||||| ||| | |||
Sbjct 3392 GATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTT-GGCTTTAACGT 3334
Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577
| | | ||||| ||| |||||| || | ||||| || || ||||| || || |
Sbjct 3333 TGTCGATGGTGTCTGAGCT---TTCCACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTCT 3277
Query 46578 TAACAAAGATTTGCAT 46593
||||||| || |||||
Sbjct 3276 TAACAAAAATCTGCAT 3261
Score = 89.7 bits (98), Expect = 6e-13
Identities = 152/219 (69%), Gaps = 6/219 (3%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||||||||| || | || |||||| ||||| |||||||||| || ||||| |
Sbjct 3932 ACGCAACACCAAGTGAATGGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACC 3873
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || |||||||| || ||||| || | ||||||||||| | || | || |||||
Sbjct 3872 ATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTT 3813
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554
|| |||||| || | | | | |||||| |||| || || || | ||
Sbjct 3812 ATCTTGGATCTTGGCTTTCACGTTATCAATCGTGTCCGAGCTC---TCAACTTCGAGGGT 3756
Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||||| || || |||| || || || ||||| |||||
Sbjct 3755 GATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 3717
>seq23940
Length=2465
Score = 105 bits (116), Expect = 8e-18
Identities = 114/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|||||||| | ||| | ||||| || | || |||||| ||||| ||||||||||
Sbjct 2301 CCTCCTCTCAGACGGAGAACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 2360
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| ||||| |||| ||||||||||| |||||||| || | |||||||||||| | ||
Sbjct 2361 AGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCCGGAGGG 2420
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517
| || |||||||| |||||| |||||
Sbjct 2421 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGA 2451
>seq6096
Length=10951
Score = 105 bits (116), Expect = 8e-18
Identities = 114/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|||||||| | ||| | ||||| || | || |||||| ||||| ||||||||||
Sbjct 10775 CCTCCTCTCAGACGGAGAACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 10834
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| ||||| |||| ||||||||||| |||||||| || | |||||||||||| | ||
Sbjct 10835 AGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCCGGAGGG 10894
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517
| || |||||||| |||||| |||||
Sbjct 10895 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGA 10925
>seq24793
Length=2311
Score = 104 bits (114), Expect = 3e-17
Identities = 153/213 (72%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||||| ||| |||||| ||||| |||||||| | | || | |||| ||
Sbjct 1405 ACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAATGTTCTGCCGTCTTCA 1464
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||||||||| ||||| | ||||||||| | || | | ||||||||| |
Sbjct 1465 AGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCTTGG 1524
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560
||||| | ||| ||| | | | ||||| |||| ||||| || | || || ||
Sbjct 1525 ATCTT-TGCTTTGACGTTGTCGATGGTGTCGGAGCTC---TCCACCTCTAGGGTAATCGT 1580
Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| ||||||| || ||||| ||||| |||||
Sbjct 1581 CTTTCCCGTCAAGGTCTTAACGAAGATCTGCAT 1613
Score = 98.7 bits (108), Expect = 1e-15
Identities = 154/219 (70%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
|||||| |||| || | |||| |||||| |||||||||||||| | ||||| || |
Sbjct 1170 ACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGGATATTGTAGTCAGCGAGAGTCCGACC 1229
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| ||||||||||| || ||||| || | ||||||||||| | || | | |||||
Sbjct 1230 ATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATCCCTTCCTT 1289
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554
|| |||||| || | | | | |||||| |||| || || || | ||
Sbjct 1290 ATCTTGGATCTTGGCTTTCACGTTATCAATCGTGTCCGAGCTC---TCAACTTCGAGGGT 1346
Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||||| || || |||| || || |||||||| |||||
Sbjct 1347 GATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 1385
Score = 95.1 bits (104), Expect = 1e-14
Identities = 141/196 (72%), Gaps = 8/196 (4%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| || | ||||| | |||| ||||||||||| ||||||||
Sbjct 1650 CTCCTTCTGGATGTTGTAATCAGCGAGAGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 1709
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | | |||||| || | || | || |||||||||| ||||| ||| | |||
Sbjct 1710 GATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTT-GGCTTTAACGT 1768
Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577
| | | ||||| ||| |||||| || | ||||| || || ||||| || || |
Sbjct 1769 TGTCGATGGTGTCTGAGCT---TTCCACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTCT 1825
Query 46578 TAACAAAGATTTGCAT 46593
||||||| || |||||
Sbjct 1826 TAACAAAAATCTGCAT 1841
>seq7348
Length=9517
Score = 102 bits (112), Expect = 9e-17
Identities = 139/190 (73%), Gaps = 8/190 (4%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||||| |||||||| | || ||||||||||| || |||||
Sbjct 188 CTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGACCATCCTCGAGCTGCTTTCCAGCGAA 129
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||| | || | | ||||||||| |||||| ||| | |||
Sbjct 128 GATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATCTTAGCCTTCA-CGT 70
Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577
| | | ||||| |||| || || |||| |||||||| ||||| || || || |
Sbjct 69 TGTCAATGGTGTCGGAGCTC---TCAACTTCCAATGTGATGGTCTTGCCGGTAAGAGTCT 13
Query 46578 TAACAAAGAT 46587
| || |||||
Sbjct 12 TCACGAAGAT 3
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 564781037348640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |