Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq7912 134 2e-26 seq1045 131 2e-25 seq3667 129 7e-25 seq806 127 2e-24 seq1703 116 4e-21 seq37186 113 5e-20 seq14782 113 5e-20 seq964 113 5e-20 seq11485 111 2e-19 seq4396 109 6e-19 seq20570 107 2e-18 seq12662 107 2e-18 seq23940 105 8e-18 seq6096 105 8e-18 seq24793 104 3e-17 seq7348 102 9e-17 >seq7912 Length=9007 Score = 134 bits (148), Expect = 2e-26 Identities = 162/219 (74%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| || | ||| ||||||||||||||||||||||| || ||||| | Sbjct 6119 ACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATATTGTAGTCGGCTAAGGTGCGACC 6178 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||| ||||| || | ||||||||||| | || | | ||||| Sbjct 6179 ATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTT 6238 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 ||| |||||| ||||| | | | ||||| |||| ||||| |||| ||| Sbjct 6239 ATCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTC---TCCACCTCCAACGT 6295 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| ||||| || || || || |||||||| ||||| Sbjct 6296 GATGGTCTTGCCGGTAAGTGTCTTGACAAAGATCTGCAT 6334 Score = 113 bits (124), Expect = 5e-20 Identities = 167/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||||||||| || | ||| |||||||||||| |||||||||| Sbjct 6334 TGCCTCCACGCAGACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGG 6393 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || ||||| || || ||||| || | | ||||||||| | | Sbjct 6394 CTAAGGTGCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGCCTCTGCTGGTCCGGAG 6453 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGAT 46540 | | | ||||||||| |||||| ||||| ||| | | | ||||| |||| Sbjct 6454 GGATACCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTC--- 6509 Query 46541 TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||| || ||||| || || |||| || || |||||||| ||||| Sbjct 6510 TCAACCTCCAAAGTAATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 6562 Score = 105 bits (116), Expect = 8e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| |||||||||||| |||||||| | | || | |||| ||| Sbjct 6582 ACGAGATGAAGCGTAGACTCCTTTTGGATGTTGTAGTCTGCCAATGTTCTGCCGTCTTCG 6641 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||||||||| || | | |||||| |||| || | | ||||||||| Sbjct 6642 AGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGATCGGGAGGGATACCTTCCTTGTCCTGA 6701 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| |||| ||| | | | |||||| |||||| || | |||||||| || Sbjct 6702 ATCTTGGCTTTGA-CGTTGTCGATTGTGTCGGAGCTTTCCACCTCGAGGGTGATGGTCTT 6760 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || || ||||| ||||| ||||| Sbjct 6761 TCCCGTGAGAGTCTTAACGAAGATCTGCAT 6790 >seq1045 Length=26565 Score = 131 bits (144), Expect = 2e-25 Identities = 148/196 (76%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || |||||| |||| |||||||| || |||||||| Sbjct 2827 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTGTTTCCCGGCGAA 2886 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||| | || | || ||||||||| |||||| ||||| ||| Sbjct 2887 GATCAGCCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 2945 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || || | ||||| || || ||||| || ||||| | Sbjct 2946 TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTCA 3005 Query 46581 CAAAGATTTGCATTTT 46596 | ||||| ||||| || Sbjct 3006 CGAAGATCTGCATCTT 3021 >seq3667 Length=14967 Score = 129 bits (142), Expect = 7e-25 Identities = 148/198 (75%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || |||||| |||| |||||||| || |||||||| Sbjct 5530 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTGTTTCCCGGCGAA 5589 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||| | || | || ||||||||| |||||| |||| | Sbjct 5590 GATCAGCCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATT 5649 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| ||||| || || | ||||| || || ||||| || ||||| || Sbjct 5650 GTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCAC 5709 Query 46582 AAAGATTTGCAT-TTTGC 46598 ||||| ||||| ||||| Sbjct 5710 GAAGATCTGCATCTTTGC 5727 >seq806 Length=29032 Score = 127 bits (140), Expect = 2e-24 Identities = 150/199 (75%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || ||||| |||| ||||||||||| |||||||| Sbjct 17985 CTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGGCCGTCTTCGAGCTGCTTCCCGGCGAA 18044 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||| | ||| | | ||||||||| |||||| ||||| ||| Sbjct 18045 GATCAGTCGCTGCTGGTCCGGCGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 18103 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || || | || || || || ||||| || ||||| | Sbjct 18104 TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTTATCGTCTTCCCCGTTAGGGTTTTCA 18163 Query 46581 CAAAGATTTGCAT-TTTGC 46598 | ||||| ||||| ||||| Sbjct 18164 CGAAGATCTGCATCTTTGC 18182 >seq1703 Length=21771 Score = 116 bits (128), Expect = 4e-21 Identities = 167/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | || |||||| |||| || | ||| |||||| ||||||||||| |||| Sbjct 18822 TGCCTCCACGTAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATATTGTAATCGG 18881 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| | || ||||||||||| |||||||| || | |||||||| || | | Sbjct 18882 CCAAGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAG 18941 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | | ||||||||| |||||| ||| ||| | | | |||||| |||| Sbjct 18942 GGATCCCTTCCTTGTCCTGGATCTT-GGCTTTCACGTTGTCGATGGTGTCGGAGCTTTCC 19000 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || | ||||| || || || || || ||||| || ||||||||||| || Sbjct 19001 ACCTCGAGGGTGATTGTCTTCCCGGTGAGAGTTTTCACGAAGATTTGCATCTT 19053 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| | | ||||| | || ||||||||||| || ||||| Sbjct 17947 CTCCTTCTGGATATTGTAGTCTGCCAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAA 18006 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | ||||||||| |||||| ||| | ||| Sbjct 18007 GATGAGACGCTGCTGATCCGGAGGGATACCTTCCTTGTCCTGGATCTTAGCCTTCA-CGT 18065 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| |||| || || |||| ||||| || || || || || || | Sbjct 18066 TGTCAATAGTGTCAGAGCTC---TCAACCTCCAATGTGATAGTCTTCCCGGTAAGAGTCT 18122 Query 46578 TAACAAAGATTTGCAT 46593 | |||||||| ||||| Sbjct 18123 TGACAAAGATCTGCAT 18138 >seq37186 Length=985 Score = 113 bits (124), Expect = 5e-20 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || |||||||| || |||||||||||| |||||||| | ||||| | || | ||| Sbjct 229 ACGAGATGCAAAGTTGACTCCTTTTGGATGTTGTAGTCAGCGAGAGTCCTGCCGACCTCG 288 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||||||||| || ||||| | ||||||||| | || | | |||||||||| Sbjct 289 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGA 348 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTT 46561 ||||| ||||| | | | ||||| |||| ||||| || | |||||||| Sbjct 349 ATCTTAGCCTTGACATTATCGATGGTGTCCGAGCTC---TCCACCTCGAGAGTGATGGTC 405 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || || ||||| ||||| Sbjct 406 TTTCCGGTAAGGGTCTTGACGAAGATCTGCAT 437 Score = 104 bits (114), Expect = 3e-17 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||||| ||| |||||| ||||| |||||||| | | || | |||| || Sbjct 1 ACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAATGTTCTGCCGTCTTCA 60 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||||||||| ||||| | ||||||||| | || | | ||||||||| | Sbjct 61 AGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCTTGG 120 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTT 46561 ||||| |||| | | | ||||| |||| ||||| |||| || ||||| Sbjct 121 ATCTTAGCTTTGACATTGTCAATGGTGTCGGAGCTC---TCCACCTCCAAAGTAATGGTC 177 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| |||| || ||||| || || ||||| Sbjct 178 TTGCCGGTCAATGTCTTAACGAAAATCTGCAT 209 >seq14782 Length=4961 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | ||||| || | || |||||| ||||| ||||| || | Sbjct 1969 CCTCCTCTCAGACGGAGAACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCCGCG 2028 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | |||| || |||||||| |||||||| |||| ||||||||||| | || Sbjct 2029 AGGGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGG 2088 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| ||||| ||||| | | | ||||||| ||||| || Sbjct 2089 ATCCCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCGGATGATTCGACC 2148 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || | || || || || ||||| || ||||| || ||||| |||||||| Sbjct 2149 TCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 2198 >seq964 Length=27231 Score = 113 bits (124), Expect = 5e-20 Identities = 167/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | || | ||| ||||||| ||| ||| || || || |||||||| | Sbjct 10177 TGCCACCTCTGAGTCGAAGCACAAGATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCAG 10118 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 ||| ||||| | || || |||||||| ||||| || || | | ||||||||| | | Sbjct 10117 CTAGCGTGCGTCCATCCTCCAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCCGGTG 10058 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTC---GCTCGAT 46540 | | | ||| || ||| |||||| ||||| ||| | || | |||| |||| Sbjct 10057 GGATACCCTCTTTATCCTGGATCTTAGCCTTGA-CGTTGTCAATGGTGTCTGAGCTC--- 10002 Query 46541 TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||| ||||||||||| || || || || || |||||||||||||| Sbjct 10001 TCAACCTCCAAAGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCAT 9949 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||| || || | || |||||| ||||||||||| || | || || || | Sbjct 10392 ACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCTGCAAGCGTACGACC 10333 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||| || || ||||| || | | ||||||||| | || | | ||||| Sbjct 10332 ATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGTGGGATCCCTTCCTT 10273 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 |||| ||||| ||||| | | | |||||| |||| ||||| |||| || Sbjct 10272 GTCCTGAATCTTAGCCTTGACGTTATCGATCGTGTCAGAGCTC---TCCACCTCCAAAGT 10216 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||||||| || || || || ||||| || ||||| Sbjct 10215 GATGGTTTTGCCAGTGAGGGTCTTCACAAAAATCTGCAT 10177 Score = 89.7 bits (98), Expect = 6e-13 Identities = 147/208 (71%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||||||||| |||| | || || | || |||||||| || |||||||| Sbjct 9684 CTCCTTCTGGATATTGTAATCGGCCAAGGTACGTCCATCCTCGAGCTGTTTACCGGCGAA 9625 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||| | || | | ||||||||| |||||| ||||| | Sbjct 9624 GATGAGCCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTAGCCTTGACGTT 9565 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | || || |||| || || || | |||||||| ||||| || || ||||| Sbjct 9564 ATCGATGGTATCGGAGCTC---TCGACTTCGAGAGTGATGGTCTTGCCGGTGAGAGTTTT 9508 Query 46579 AACAAAGATTTGCATTTTGCACAAACAA 46606 || || ||||||| | |||| |||||| Sbjct 9507 CACGAAAATTTGCA-TCTGCA-AAACAA 9482 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| | || ||||| | || || |||||||| || ||||| Sbjct 10596 CTCCTTCTGGATATTGTAGTCAGCAAGCGTGCGACCATCCTCAAGCTGCTTACCAGCGAA 10537 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||| ||||| | || | | ||||||||| || || ||| | | Sbjct 10536 GATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCCTGAATTTTAGCCTTCACATT 10477 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| || || |||| || || || ||||| ||||| || || Sbjct 10476 GTCGATTGTGTCTGAGCTC---TCAACTTCCAAGGTAATAGTCTTGCCTGTCAGAGTCTT 10420 Query 46579 AACAAAGATTTGCAT 46593 |||||||||||||| Sbjct 10419 CACAAAGATTTGCAT 10405 >seq11485 Length=6519 Score = 111 bits (122), Expect = 2e-19 Identities = 151/208 (73%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| |||| || ||||| |||| || |||||||| || ||||| Sbjct 4669 CTCCTTCTGGATGTTGTAATCGGCCAGGGTGCGTCCGTCTTCTAGCTGCTTCCCAGCGAA 4610 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||||| || | || ||||||||| |||||| ||||| | Sbjct 4609 GATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATT 4550 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| || || || | |||||||| ||||| || || ||||| Sbjct 4549 GTCTATAGTGTCGGAGCTC---TCGACCTCGAGAGTGATGGTCTTGCCGGTGAGTGTTTT 4493 Query 46579 AACAAAGATTTGCATTTTGCACAAACAA 46606 || || ||||||| | |||| |||||| Sbjct 4492 CACGAAAATTTGCA-TCTGCAAAAACAA 4466 >seq4396 Length=13502 Score = 109 bits (120), Expect = 6e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||||||||| || | |||| |||||| ||||| || ||||| | Sbjct 328 CCTCCACGCAGACGCAACACCAAGTGAAGTGTAGACTCCTTCTGGATGTTATAGTCAGCC 269 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||||| | || |||||||||||||| ||||| || | ||||||||||| | || Sbjct 268 AAGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 209 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | | |||||||||| ||||| ||||| ||| | | | ||||| |||| || Sbjct 208 ATTCCCTCCTTGTCCTGAATCTTAGCCTTGA-CGTTGTCAATGGTGTCGGAGCTC---TC 153 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | ||||| || || || || || || || |||||||| ||||| Sbjct 152 AACTTCGAGGGTGATTGTCTTTCCGGTTAGTGTCTTGACAAAGATCTGCAT 102 Score = 109 bits (120), Expect = 6e-19 Identities = 157/220 (71%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| || | |||| |||||| |||||||||||||| | ||||| | | Sbjct 545 ACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGGATATTGTAGTCAGCGAGAGTCCTGCC 486 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| ||||||||||| || ||||| || | ||||||||||| | || | | ||||| Sbjct 485 GTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATCCCTTCCTT 426 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 || |||||| || | | | | |||||| |||| ||||| |||| || Sbjct 425 ATCTTGGATCTTGGCTTTCACGTTATCAATCGTGTCCGAGCTC---TCCACCTCCAGTGT 369 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||||| || || |||| || || || |||||||||||| Sbjct 368 GATGGTCTTACCAGTCAAGGTCTTGACGAAGATTTGCATT 329 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| ||||||| || | || ||| || || || ||||| || | | ||||| | Sbjct 12706 ACGTAACACCAAGTGAAGGGTTGACTCTTTCTGAATGTTGTAATCAGCCAAGGTGCGACC 12647 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||| ||||| || | ||||||||||| | || | | |||||| Sbjct 12646 ATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATCCCCTCCTT 12587 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCG 46553 |||| ||||| ||||| ||| | | | ||||| |||| ||||| |||| | Sbjct 12586 GTCCTGAATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTC---TCCACCTCCAAAG 12531 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || || ||||| || |||||||| || ||||| Sbjct 12530 TGATAGTCTTCCCGGTCAGTGTCTTAACAAAAATCTGCAT 12491 >seq20570 Length=3172 Score = 107 bits (118), Expect = 2e-18 Identities = 154/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || |||||||| || |||||| ||||| |||||||| | ||||| | | || ||| Sbjct 82 ACGAGATGCAAAGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCG 141 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||||||||| || ||||| | ||||||||| | || | | |||||| ||| | Sbjct 142 AGTTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGTGGGATCCCCTCCTTATCCTGG 201 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560 ||||| ||| | ||| | | | ||||| |||| ||||| |||| ||||| || Sbjct 202 ATCTTAGCCTT-AACGTTGTCAATAGTGTCGGAGCTC---TCCACCTCCAAAGTGATTGT 257 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||| || || |||||||| ||||| Sbjct 258 CTTTCCGGTCAATGTCTTGACAAAGATCTGCAT 290 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || ||||||||||| || | ||| |||||| ||||| |||||||| | Sbjct 292 CCACCACGTAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 351 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || | | |||| || | |||||| || ||||| || | | |||||| || | || Sbjct 352 AAGGTTCTCCCGTCCTCCAACTGCTTTCCTGCGAAGATAAGCCTCTGCTGATCCGGAGGA 411 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | | ||||||||| |||||| ||| | ||| | | | ||||| ||| ||| Sbjct 412 ATCCCTTCCTTGTCCTGGATCTTGGCCTT-AACGTTGTCGATGGTGTCAGAGCT---TTC 467 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || | ||||| || || || || || ||||| || ||||| ||||| Sbjct 468 CACCTCGAGGGTGATTGTCTTTCCTGTGAGAGTTTTCACGAAGATCTGCAT 518 >seq12662 Length=5898 Score = 107 bits (118), Expect = 2e-18 Identities = 154/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||||| ||| |||||| ||||| |||||||| | ||||| | |||| || Sbjct 3697 ACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCGAGAGTTCTGCCGTCTTCA 3638 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| ||||| ||||| | ||||||||| | || | | ||||||||| | Sbjct 3637 AGCTGCTTGCCTGCGAAGATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCTTGG 3578 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560 ||||| | ||| ||| | | | ||||| |||| ||||| || | || || || Sbjct 3577 ATCTT-TGCTTTGACGTTGTCGATGGTGTCGGAGCTC---TCCACCTCTAGGGTAATCGT 3522 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||||| || ||||| ||||| ||||| Sbjct 3521 CTTTCCCGTCAAGGTCTTAACGAAGATCTGCAT 3489 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || | ||||| | |||| ||||||||||| |||||||| Sbjct 3452 CTCCTTCTGGATGTTGTAATCAGCGAGAGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 3393 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | |||||| || | || | || |||||||||| ||||| ||| | ||| Sbjct 3392 GATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTT-GGCTTTAACGT 3334 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| ||| |||||| || | ||||| || || ||||| || || | Sbjct 3333 TGTCGATGGTGTCTGAGCT---TTCCACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTCT 3277 Query 46578 TAACAAAGATTTGCAT 46593 ||||||| || ||||| Sbjct 3276 TAACAAAAATCTGCAT 3261 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| || | || |||||| ||||| |||||||||| || ||||| | Sbjct 3932 ACGCAACACCAAGTGAATGGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACC 3873 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| || ||||| || | ||||||||||| | || | || ||||| Sbjct 3872 ATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTT 3813 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 || |||||| || | | | | |||||| |||| || || || | || Sbjct 3812 ATCTTGGATCTTGGCTTTCACGTTATCAATCGTGTCCGAGCTC---TCAACTTCGAGGGT 3756 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || || |||| || || || ||||| ||||| Sbjct 3755 GATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 3717 >seq23940 Length=2465 Score = 105 bits (116), Expect = 8e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | ||||| || | || |||||| ||||| |||||||||| Sbjct 2301 CCTCCTCTCAGACGGAGAACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 2360 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| ||||||||||| |||||||| || | |||||||||||| | || Sbjct 2361 AGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCCGGAGGG 2420 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 | || |||||||| |||||| ||||| Sbjct 2421 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGA 2451 >seq6096 Length=10951 Score = 105 bits (116), Expect = 8e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | ||||| || | || |||||| ||||| |||||||||| Sbjct 10775 CCTCCTCTCAGACGGAGAACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 10834 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| ||||||||||| |||||||| || | |||||||||||| | || Sbjct 10835 AGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCCGGAGGG 10894 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 | || |||||||| |||||| ||||| Sbjct 10895 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGA 10925 >seq24793 Length=2311 Score = 104 bits (114), Expect = 3e-17 Identities = 153/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||||| ||| |||||| ||||| |||||||| | | || | |||| || Sbjct 1405 ACGAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAATGTTCTGCCGTCTTCA 1464 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||||||||| ||||| | ||||||||| | || | | ||||||||| | Sbjct 1465 AGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCTTGG 1524 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560 ||||| | ||| ||| | | | ||||| |||| ||||| || | || || || Sbjct 1525 ATCTT-TGCTTTGACGTTGTCGATGGTGTCGGAGCTC---TCCACCTCTAGGGTAATCGT 1580 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||||| || ||||| ||||| ||||| Sbjct 1581 CTTTCCCGTCAAGGTCTTAACGAAGATCTGCAT 1613 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| || | |||| |||||| |||||||||||||| | ||||| || | Sbjct 1170 ACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGGATATTGTAGTCAGCGAGAGTCCGACC 1229 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || ||||||||||| || ||||| || | ||||||||||| | || | | ||||| Sbjct 1230 ATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATCCCTTCCTT 1289 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 || |||||| || | | | | |||||| |||| || || || | || Sbjct 1290 ATCTTGGATCTTGGCTTTCACGTTATCAATCGTGTCCGAGCTC---TCAACTTCGAGGGT 1346 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || || |||| || || |||||||| ||||| Sbjct 1347 GATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 1385 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || | ||||| | |||| ||||||||||| |||||||| Sbjct 1650 CTCCTTCTGGATGTTGTAATCAGCGAGAGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 1709 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | |||||| || | || | || |||||||||| ||||| ||| | ||| Sbjct 1710 GATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTT-GGCTTTAACGT 1768 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| ||| |||||| || | ||||| || || ||||| || || | Sbjct 1769 TGTCGATGGTGTCTGAGCT---TTCCACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTCT 1825 Query 46578 TAACAAAGATTTGCAT 46593 ||||||| || ||||| Sbjct 1826 TAACAAAAATCTGCAT 1841 >seq7348 Length=9517 Score = 102 bits (112), Expect = 9e-17 Identities = 139/190 (73%), Gaps = 8/190 (4%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| |||||||| | || ||||||||||| || ||||| Sbjct 188 CTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGACCATCCTCGAGCTGCTTTCCAGCGAA 129 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||||||||| |||||| ||| | ||| Sbjct 128 GATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATCTTAGCCTTCA-CGT 70 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| |||| || || |||| |||||||| ||||| || || || | Sbjct 69 TGTCAATGGTGTCGGAGCTC---TCAACTTCCAATGTGATGGTCTTGCCGGTAAGAGTCT 13 Query 46578 TAACAAAGAT 46587 | || ||||| Sbjct 12 TCACGAAGAT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564781037348640