Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1703 95.1 8e-15 seq4396 87.8 1e-12 seq7912 84.2 2e-11 >seq1703 Length=21771 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||||| ||||| || | || || || || ||||| |||||||| Sbjct 18823 GCCTCCACGTAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATATTGTAATCGGC 18882 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| |||| || | || || ||| | || || | |||||||||||||| || Sbjct 18883 CAAGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGG 18942 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| || || ||| | ||| | | | ||||| | |||||||| Sbjct 18943 GATCCCTTCCTTGTCCTGGATCTTGGCTTTCA-CGTTGTCGATGGTGTCGGAGCTTTCCA 19001 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | || ||||| || || || | |||||| |||||||| ||||| Sbjct 19002 CCTCGAGGGTGATTGTCTTCCCGGTGAGAGTTTTCACGAAGATTTGCAT 19050 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || || | ||||| ||| || || |||||||||||||| || | | | |||| Sbjct 18611 AGAACGAGATGCAGAGTCGACTCCTTCTGTATATTATAATCAGCAAGAGTCCTCCCATCC 18670 Query 39568 TCCAATTG-TTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC 39626 ||||| || |||||||| ||| || | | ||||||||||| || | ||||| || || Sbjct 18671 TCCAACTGCTTTCCCGC-AAAGATCAGCCTCTGCTGATCCGGAGGGATCCCTTCCTTATC 18729 Query 39627 GCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTG 39685 ||| || || | ||| | | | ||| || | ||| ||||| |||||||| || | Sbjct 18730 TTGTATCTTAGCCTTGA-CGTTGTCGATTGTATCAGAGCTCTCCACCTCCAAAGTGATAG 18788 Query 39686 TTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | || || || | ||| || ||||||||||||||| Sbjct 18789 TCTTTCCGGTAAGAGTCTTGACGAAGATCTGCATG 18823 >seq4396 Length=13502 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 |||||||| || || || || || | | || |||| || | ||| |||||| | || Sbjct 12021 TCTTTTTGGATGTTGTAGTCAGCGAGAGTACGCCCATCTTCAAGTTGCTTCCCGGCGAAG 11962 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | ||||||||||| ||| | |||||| ||||| | | | || | || | ||| Sbjct 11961 ATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTC-CTGAATCTTGGCTTTAACGTT 11903 Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | ||||||| ||||||||| || | || || || || || || | ||| || || Sbjct 11902 GTCGATGGTGTCTGAGCTTTCCACCTCGAGGGTGATCGTCTTTCCGGTGAGAGTCTTAAC 11843 Query 39708 GAAGATCTGCAT 39719 ||| |||||||| Sbjct 11842 GAATATCTGCAT 11831 >seq7912 Length=9007 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| ||||| ||||| || | ||| || ||||| || || || ||||| Sbjct 6335 GCCTCCACGCAGACGCAACACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGC 6394 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || ||| |||| || | |||||||| | || || | | |||||| |||| || Sbjct 6395 TAAGGTGCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGCCTCTGCTGGTCCGGAGG 6454 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCA 39670 | || || ||||| || || || | ||| | | || |||| | ||| || | Sbjct 6455 GATACCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTCTCAA 6513 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | ||||||||||| || || || || ||||| || || |||||||||||| Sbjct 6514 CCTCCAAAGTAATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCATG 6563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347095552740956