Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq13279 143 3e-29
seq521 136 5e-27
seq12321 116 5e-21
seq9289 111 2e-19
seq549 111 2e-19
seq9582 100 4e-16
seq2238 93.3 5e-14
seq2418 84.2 3e-11
>seq13279
Length=5599
Score = 143 bits (158), Expect = 3e-29
Identities = 308/454 (68%), Gaps = 10/454 (2%)
Strand=Plus/Minus
Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944
|| ||||| |||||||| | || | ||| ||||| |||||| | | ||| |||||
Sbjct 917 CGGTCAAAACGACCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTGGTTGCA 858
Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001
|| | |||| || ||| || |||| ||||| ||||||||||| ||||| |||||
Sbjct 857 GCAACCACAATAACACCAGT---GTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGA 801
Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCT-GGCATACCACCAGCACTGCGTTGCTTTCC 16060
|||| || || || | ||||||||| || | | | |||| | | ||| | ||
Sbjct 800 TTAAGCGTCTGCTCTCTCTCATCATTCCCTCCACCGATC-CCAGTCCCTCTCTGCCTACC 742
Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAA 16120
|| ||||||||||| || | ||||| ||||| || ||| || ||| || ||
Sbjct 741 AACAGCATCAATCTCGTCCACAAAGACAATGCAAGGAGCATTCTCCTTAGCCTTTTTGAA 682
Query 16121 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 16180
||||| || || | | || || ||||| ||||||||||| || || | | | |
Sbjct 681 AAGATCACGGACCCTCGAAGCACCAACACCCACAAACATCTCAACGAACTCAGAACCAG- 623
Query 16181 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 16239
| |||| | ||| || ||| || |||||| |||||||| || | ||||| ||||
Sbjct 622 AGATTGAAAAGAAAGGCACACCAGCTTCACCAGCAATGGCCTTTGCTAACAGAGTTTTAC 563
Query 16240 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT 16299
| || || || ||| |||||||| ||||| || ||| || ||| || |
Sbjct 562 CAGTGCCAGGAGGACCAACGAGGAGGACACCTTTCGGGATCCGAGCACCAACCGCAGTGA 503
Query 16300 ATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333
| |||||||| | ||| ||||| ||||| | |||
Sbjct 502 ACCTCTCAGGCTTCTTGAGAAACTCCACCACCTC 469
>seq521
Length=33513
Score = 136 bits (150), Expect = 5e-27
Identities = 303/448 (68%), Gaps = 10/448 (2%)
Strand=Plus/Minus
Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944
|| ||||| || ||||| | ||| | ||| ||||| ||||| | | || |||||
Sbjct 24617 CGGTCAAAACGGCCTGGTCTAAGCAAGGCGGAGTCAAGAATATCTGCTCTGTTGGTTGCA 24558
Query 15945 GCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002
|| | || | | ||| |||| | || |||||||||||||||| ||||| |||||||
Sbjct 24557 GCAACTACGATCACACCAGTGTTACCTT--CAAAACCATCCATCTCCGTCAAGAGCTGGT 24500
Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 16060
||| || ||||| | || |||||| || | | | |||| | | ||| | ||
Sbjct 24499 TAAGCGTCTGTTCTCTCTCGTCATTCCCT--CCACCGATTCCAGTCCCTCTCTGCCTACC 24442
Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAA 16120
|| || ||||||||||||| ||||| ||||| || ||| || || || ||
Sbjct 24441 GACAGCGTCAATCTCATCAACAAAGACAATGCAGGGAGCATTCTCCTTGGCCTTTTTGAA 24382
Query 16121 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 16180
||||| || || | | || || ||||| || |||||||| ||||| | | | |
Sbjct 24381 AAGATCACGGACCCTCGAAGCACCAACACCGACGAACATCTCAACAAACTCAGAACCAG- 24323
Query 16181 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 16239
| |||| | || || ||| || |||||| |||||||| || | || || || |
Sbjct 24322 AGATTGAAAAAAAAGGCACACCAGCTTCACCGGCAATGGCCTTTGCCAAGAGTGTTTTTC 24263
Query 16240 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT 16299
| ||||| || ||| |||||||| ||||| |||||| | |||||| || |
Sbjct 24262 CAGTACCGGGAGGACCAACGAGGAGGACACCTTTCGGAATCCTCGCGCCAACAGCAGTGA 24203
Query 16300 ATCTCTCAGGTTGCTTAAGAAAATCCAC 16327
| |||||||| | ||| ||||| |||||
Sbjct 24202 ACCTCTCAGGCTTCTTGAGAAACTCCAC 24175
>seq12321
Length=6064
Score = 116 bits (128), Expect = 5e-21
Identities = 143/195 (73%), Gaps = 3/195 (2%)
Strand=Plus/Plus
Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGA 102185
||||| || | ||||| ||||||||| | || | || | | || || ||| |
Sbjct 1182 AAGAAGGCCCAATGGGCCATGAAGTGGATCGACGGA---TCTCAGACTTTCGCGGAGAGG 1238
Query 102186 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 102245
|| |||| || || || || || || ||||||||||| || ||||||| | || |
Sbjct 1239 ATCGTCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCGATCTTC 1298
Query 102246 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 102305
|||||||||||||| || |||||||| ||||| ||||||||||||||| ||||| |
Sbjct 1299 TGGCTCAAGAAGCGTGGGCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCGAGA 1358
Query 102306 GACGAGGGACTCCAC 102320
|||||||| || |||
Sbjct 1359 GACGAGGGGCTTCAC 1373
>seq9289
Length=7890
Score = 111 bits (122), Expect = 2e-19
Identities = 285/426 (67%), Gaps = 20/426 (5%)
Strand=Plus/Plus
Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975
||||| || || | | ||| ||||| || | || | ||||| |||| | || |||
Sbjct 2910 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACAACGATGATACCAGTGTTACCTT--CAA 2967
Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035
| ||||||||||| || | | |||||| | ||| ||||||| |||||||| |
Sbjct 2968 ACCCATCCATCTCAGTTAGCAACTGGTTCAAAGTCTGTTCCCTCTCATCATTACC----- 3022
Query 16036 TACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 16089
|||||| | ||| | |||| | || || |||||||||||||||| ||||| |
Sbjct 3023 -ACCACCGATTCCTGTCCCTCTTTGCCTACCAACAGCATCAATCTCATCAACAAAGACAA 3081
Query 16090 TGCATGGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148
|||| || || || || | ||| ||| ||||| || || | | ||| || |||
Sbjct 3082 TGCAAGGAGCGTTCTCCTTAGCCTTCTTGAAA-AGATCACGAACCCTCGAGGCACCAACA 3140
Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 16207
|| ||||||||||| || || | | ||| | || | || ||| || ||| || |||
Sbjct 3141 CCGACAAACATCTCAACGAACTCCGACCCGG-AGATGGAGAAGAACGGCACACCAGCTTC 3199
Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 16267
||| || || ||| || ||||| ||||| || ||||| || ||| || || |
Sbjct 3200 ACCAGCGATAGCTTTCGCCAGAAGCGTCTTCCCAGTACCGGGAGGACCGATAAGCAGAAC 3259
Query 16268 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327
|||| || ||| || ||| || | | |||||||| | ||| ||||| || ||
Sbjct 3260 ACCTTTCGGGATCCGAGCACCAACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCAAC 3319
Query 16328 AATCTC 16333
| |||
Sbjct 3320 CACCTC 3325
>seq549
Length=32968
Score = 111 bits (122), Expect = 2e-19
Identities = 114/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231
|||| || ||| | || | || || || || || || || ||||||||||| || ||
Sbjct 20177 CCTTCGCCGAGAGGATCGTGGCGTTCGCTTGCGTGGAAGGGATCTTCTTCTCGGGCAGCT 20236
Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291
||||| | || | ||||| |||||||| || |||||||| |||||| |||||||||||
Sbjct 20237 TCTGCTCGATCTTCTGGCTGAAGAAGCGTGGGCTCATGCCGGGTCTCACCTTCTCCAACG 20296
Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCAC 102320
|||| ||||| | ||||| || ||||||
Sbjct 20297 AGCTGATCTCGAGAGACGAAGGCCTCCAC 20325
>seq9582
Length=7681
Score = 100 bits (110), Expect = 4e-16
Identities = 219/322 (68%), Gaps = 16/322 (5%)
Strand=Plus/Plus
Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034
|| ||||||||||| ||||| ||||| ||||| || || |||| ||||||||| || |
Sbjct 7100 AACCCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGCTCCCTCTCATCATTCCCT--C 7157
Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092
| ||| ||||| | | ||| | ||||| |||||||||||||| || || || ||||
Sbjct 7158 CTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCGATAAAAACAATGC 7217
Query 16093 ATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCA 16146
| || ||| ||||| | || || | ||||| || || || | || ||||
Sbjct 7218 AAGGCGCCTTGGCCTTCGCCTTC----TCGAACAAATCCC-TA-ACCCTAGACGCACCCA 7271
Query 16147 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 16206
|||| || || | ||| ||||| | | || | || || ||| || || | |
Sbjct 7272 CACCGACGAAAAGCTCAACAAACTCAGAAGCCGCGCAGGAGAAGAACGGCACTCCCGCCT 7331
Query 16207 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGG 16266
| || |||| |||| || | ||||||||||| ||||| || || | |||||
Sbjct 7332 CTCCAGCAACAGCTCTAGCTAACAGAGTCTTACCAGTACCAGGAGGCCCAACAAGGAGAC 7391
Query 16267 CACCTCGTGGAATCTTGGCGCC 16288
||| ||||||||||||||
Sbjct 7392 ACCCTTTGGGAATCTTGGCGCC 7413
>seq2238
Length=19260
Score = 93.3 bits (102), Expect = 5e-14
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 102198 GCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAG 102257
|| |||| || || ||||||||||| ||| ||||||| | || | |||||||||||
Sbjct 11497 GCCTGTGCCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTTCTGGCTCAAGAAA 11438
Query 102258 CGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313
||||| ||||| || ||| | ||||||||| ||| | |||||||| ||||| ||
Sbjct 11437 CGAGGGCTCATACCTGGTTTGACCTTCTCCAATGAGTTGATCTCTCGAGACGACGG 11382
>seq2418
Length=18691
Score = 84.2 bits (92), Expect = 3e-11
Identities = 91/118 (77%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 113188 TTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCA 113247
|||| ||||| | |||||||| |||| || ||||||||||||||| ||||| || ||
Sbjct 1379 TTGATATGGCAGTTGATCGTGGATGCTTTATCGATCAAAGTCAAAGTTTGAATATACACA 1438
Query 113248 TGGA-AAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGG 113304
|||| || ||||| || |||| ||| ||||| | ||| | ||| ||||||||||
Sbjct 1439 TGGACAAACCCAACTTTG-CCAAACTCACTTCTTTACACTTCCACACCTGGAAGAAGG 1495
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620240126287040
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