Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq13279 143 3e-29 seq521 136 5e-27 seq12321 116 5e-21 seq9289 111 2e-19 seq549 111 2e-19 seq9582 100 4e-16 seq2238 93.3 5e-14 seq2418 84.2 3e-11 >seq13279 Length=5599 Score = 143 bits (158), Expect = 3e-29 Identities = 308/454 (68%), Gaps = 10/454 (2%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| |||||||| | || | ||| ||||| |||||| | | ||| ||||| Sbjct 917 CGGTCAAAACGACCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTGGTTGCA 858 Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 || | |||| || ||| || |||| ||||| ||||||||||| ||||| ||||| Sbjct 857 GCAACCACAATAACACCAGT---GTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGA 801 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCT-GGCATACCACCAGCACTGCGTTGCTTTCC 16060 |||| || || || | ||||||||| || | | | |||| | | ||| | || Sbjct 800 TTAAGCGTCTGCTCTCTCTCATCATTCCCTCCACCGATC-CCAGTCCCTCTCTGCCTACC 742 Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAA 16120 || ||||||||||| || | ||||| ||||| || ||| || ||| || || Sbjct 741 AACAGCATCAATCTCGTCCACAAAGACAATGCAAGGAGCATTCTCCTTAGCCTTTTTGAA 682 Query 16121 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 16180 ||||| || || | | || || ||||| ||||||||||| || || | | | | Sbjct 681 AAGATCACGGACCCTCGAAGCACCAACACCCACAAACATCTCAACGAACTCAGAACCAG- 623 Query 16181 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 16239 | |||| | ||| || ||| || |||||| |||||||| || | ||||| |||| Sbjct 622 AGATTGAAAAGAAAGGCACACCAGCTTCACCAGCAATGGCCTTTGCTAACAGAGTTTTAC 563 Query 16240 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT 16299 | || || || ||| |||||||| ||||| || ||| || ||| || | Sbjct 562 CAGTGCCAGGAGGACCAACGAGGAGGACACCTTTCGGGATCCGAGCACCAACCGCAGTGA 503 Query 16300 ATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 | |||||||| | ||| ||||| ||||| | ||| Sbjct 502 ACCTCTCAGGCTTCTTGAGAAACTCCACCACCTC 469 >seq521 Length=33513 Score = 136 bits (150), Expect = 5e-27 Identities = 303/448 (68%), Gaps = 10/448 (2%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| | ||| | ||| ||||| ||||| | | || ||||| Sbjct 24617 CGGTCAAAACGGCCTGGTCTAAGCAAGGCGGAGTCAAGAATATCTGCTCTGTTGGTTGCA 24558 Query 15945 GCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 || | || | | ||| |||| | || |||||||||||||||| ||||| ||||||| Sbjct 24557 GCAACTACGATCACACCAGTGTTACCTT--CAAAACCATCCATCTCCGTCAAGAGCTGGT 24500 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 16060 ||| || ||||| | || |||||| || | | | |||| | | ||| | || Sbjct 24499 TAAGCGTCTGTTCTCTCTCGTCATTCCCT--CCACCGATTCCAGTCCCTCTCTGCCTACC 24442 Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAA 16120 || || ||||||||||||| ||||| ||||| || ||| || || || || Sbjct 24441 GACAGCGTCAATCTCATCAACAAAGACAATGCAGGGAGCATTCTCCTTGGCCTTTTTGAA 24382 Query 16121 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 16180 ||||| || || | | || || ||||| || |||||||| ||||| | | | | Sbjct 24381 AAGATCACGGACCCTCGAAGCACCAACACCGACGAACATCTCAACAAACTCAGAACCAG- 24323 Query 16181 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 16239 | |||| | || || ||| || |||||| |||||||| || | || || || | Sbjct 24322 AGATTGAAAAAAAAGGCACACCAGCTTCACCGGCAATGGCCTTTGCCAAGAGTGTTTTTC 24263 Query 16240 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT 16299 | ||||| || ||| |||||||| ||||| |||||| | |||||| || | Sbjct 24262 CAGTACCGGGAGGACCAACGAGGAGGACACCTTTCGGAATCCTCGCGCCAACAGCAGTGA 24203 Query 16300 ATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 | |||||||| | ||| ||||| ||||| Sbjct 24202 ACCTCTCAGGCTTCTTGAGAAACTCCAC 24175 >seq12321 Length=6064 Score = 116 bits (128), Expect = 5e-21 Identities = 143/195 (73%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGA 102185 ||||| || | ||||| ||||||||| | || | || | | || || ||| | Sbjct 1182 AAGAAGGCCCAATGGGCCATGAAGTGGATCGACGGA---TCTCAGACTTTCGCGGAGAGG 1238 Query 102186 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 102245 || |||| || || || || || || ||||||||||| || ||||||| | || | Sbjct 1239 ATCGTCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCGATCTTC 1298 Query 102246 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 102305 |||||||||||||| || |||||||| ||||| ||||||||||||||| ||||| | Sbjct 1299 TGGCTCAAGAAGCGTGGGCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCGAGA 1358 Query 102306 GACGAGGGACTCCAC 102320 |||||||| || ||| Sbjct 1359 GACGAGGGGCTTCAC 1373 >seq9289 Length=7890 Score = 111 bits (122), Expect = 2e-19 Identities = 285/426 (67%), Gaps = 20/426 (5%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 ||||| || || | | ||| ||||| || | || | ||||| |||| | || ||| Sbjct 2910 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACAACGATGATACCAGTGTTACCTT--CAA 2967 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 | ||||||||||| || | | |||||| | ||| ||||||| |||||||| | Sbjct 2968 ACCCATCCATCTCAGTTAGCAACTGGTTCAAAGTCTGTTCCCTCTCATCATTACC----- 3022 Query 16036 TACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 16089 |||||| | ||| | |||| | || || |||||||||||||||| ||||| | Sbjct 3023 -ACCACCGATTCCTGTCCCTCTTTGCCTACCAACAGCATCAATCTCATCAACAAAGACAA 3081 Query 16090 TGCATGGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 |||| || || || || | ||| ||| ||||| || || | | ||| || ||| Sbjct 3082 TGCAAGGAGCGTTCTCCTTAGCCTTCTTGAAA-AGATCACGAACCCTCGAGGCACCAACA 3140 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 16207 || ||||||||||| || || | | ||| | || | || ||| || ||| || ||| Sbjct 3141 CCGACAAACATCTCAACGAACTCCGACCCGG-AGATGGAGAAGAACGGCACACCAGCTTC 3199 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 16267 ||| || || ||| || ||||| ||||| || ||||| || ||| || || | Sbjct 3200 ACCAGCGATAGCTTTCGCCAGAAGCGTCTTCCCAGTACCGGGAGGACCGATAAGCAGAAC 3259 Query 16268 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 |||| || ||| || ||| || | | |||||||| | ||| ||||| || || Sbjct 3260 ACCTTTCGGGATCCGAGCACCAACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCAAC 3319 Query 16328 AATCTC 16333 | ||| Sbjct 3320 CACCTC 3325 >seq549 Length=32968 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 |||| || ||| | || | || || || || || || || ||||||||||| || || Sbjct 20177 CCTTCGCCGAGAGGATCGTGGCGTTCGCTTGCGTGGAAGGGATCTTCTTCTCGGGCAGCT 20236 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 ||||| | || | ||||| |||||||| || |||||||| |||||| ||||||||||| Sbjct 20237 TCTGCTCGATCTTCTGGCTGAAGAAGCGTGGGCTCATGCCGGGTCTCACCTTCTCCAACG 20296 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCAC 102320 |||| ||||| | ||||| || |||||| Sbjct 20297 AGCTGATCTCGAGAGACGAAGGCCTCCAC 20325 >seq9582 Length=7681 Score = 100 bits (110), Expect = 4e-16 Identities = 219/322 (68%), Gaps = 16/322 (5%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || ||||||||||| ||||| ||||| ||||| || || |||| ||||||||| || | Sbjct 7100 AACCCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGCTCCCTCTCATCATTCCCT--C 7157 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | ||| ||||| | | ||| | ||||| |||||||||||||| || || || |||| Sbjct 7158 CTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCGATAAAAACAATGC 7217 Query 16093 ATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCA 16146 | || ||| ||||| | || || | ||||| || || || | || |||| Sbjct 7218 AAGGCGCCTTGGCCTTCGCCTTC----TCGAACAAATCCC-TA-ACCCTAGACGCACCCA 7271 Query 16147 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 16206 |||| || || | ||| ||||| | | || | || || ||| || || | | Sbjct 7272 CACCGACGAAAAGCTCAACAAACTCAGAAGCCGCGCAGGAGAAGAACGGCACTCCCGCCT 7331 Query 16207 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGG 16266 | || |||| |||| || | ||||||||||| ||||| || || | ||||| Sbjct 7332 CTCCAGCAACAGCTCTAGCTAACAGAGTCTTACCAGTACCAGGAGGCCCAACAAGGAGAC 7391 Query 16267 CACCTCGTGGAATCTTGGCGCC 16288 ||| |||||||||||||| Sbjct 7392 ACCCTTTGGGAATCTTGGCGCC 7413 >seq2238 Length=19260 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 102198 GCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAG 102257 || |||| || || ||||||||||| ||| ||||||| | || | ||||||||||| Sbjct 11497 GCCTGTGCCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTTCTGGCTCAAGAAA 11438 Query 102258 CGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||||| ||||| || ||| | ||||||||| ||| | |||||||| ||||| || Sbjct 11437 CGAGGGCTCATACCTGGTTTGACCTTCTCCAATGAGTTGATCTCTCGAGACGACGG 11382 >seq2418 Length=18691 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 113188 TTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCA 113247 |||| ||||| | |||||||| |||| || ||||||||||||||| ||||| || || Sbjct 1379 TTGATATGGCAGTTGATCGTGGATGCTTTATCGATCAAAGTCAAAGTTTGAATATACACA 1438 Query 113248 TGGA-AAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGG 113304 |||| || ||||| || |||| ||| ||||| | ||| | ||| |||||||||| Sbjct 1439 TGGACAAACCCAACTTTG-CCAAACTCACTTCTTTACACTTCCACACCTGGAAGAAGG 1495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620240126287040