Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq13279 132 6e-26 seq12321 123 3e-23 seq521 123 3e-23 seq9289 102 1e-16 >seq13279 Length=5599 Score = 132 bits (146), Expect = 6e-26 Identities = 320/475 (67%), Gaps = 16/475 (3%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || ||||||||||| | || | || ||||||||||| | | || || || Sbjct 917 CGGTCAAAACGACCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTGGTTGCA 858 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | || ||||| | | || || || ||||| || || | ||||| || Sbjct 857 GCAACCACAATAACACCAGTGTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGATTA 798 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCCGAACGCT-TCT---TA 11676 | |||||| || | |||||| || | | ||||| | || | || ||| || Sbjct 797 AGCGTCTGCTCTCTCTCATCATTC-----CCT-CCACCGATCCCAGTCCCTCTCTGCCTA 744 Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCG 11736 || ||||| |||||||| || | || || || || || || | |||| || | Sbjct 743 CCAACAGCATCAATCTCGTCCACAAAGACAATGCAAGGAGCATTCTCCTTAGCCTTTTTG 684 Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCA 11796 ||||| ||||| || | | || |||||||| || |||||||||||||| | | || Sbjct 683 AAAAGATCACGGACCCTCGAAGCACCAACACCCACAAACATCTCAACGAACTCAGAACCA 624 Query 11797 GAACACTGAAT-GAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 || | |||| ||| || ||| || |||||||| ||||| || | ||||| || Sbjct 623 GAG-ATTGAAAAGAAAGGCACACCAGCTTCACCAGCAATGGCCTTTGCTAACAGAGTTTT 565 Query 11856 ACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAA 11915 ||| || ||||| | |||| |||| ||| | || |||||| |||||| || Sbjct 564 ACCAGTGCCAGGAGGACCAACGAGGAGGACACCTTTCGGGATCCGAGCACCAACCGCAGT 505 Query 11916 GTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC-TCAAGTTCCTCCTTGGC 11969 | | | ||||||||||||||| || ||||| | |||| | ||| |||| |||||| Sbjct 504 GAACCTCTCAGGCTTCTTGAGAAACTCCACCACCTCCATGAAG-TCCTGCTTGGC 451 >seq12321 Length=6064 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 |||||||| || || | ||||||||||| || |||| || ||||||||||| || Sbjct 1372 TGAAGCCCCTCGTCTCTCGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGCCCA 1313 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||| | || || ||||| || |||||||| || || || ||| Sbjct 1312 CGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCAG 1253 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAG 119687 ||||| |||| | | ||| || |||| |||| ||||| |||||| | ||||| Sbjct 1252 GCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGATCCGTCGATCCACTTCATGGCCCAT 1193 Query 119688 TTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 | |||||| | | | |||||||| || | |||||| Sbjct 1192 TGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGGC 1155 >seq521 Length=33513 Score = 123 bits (136), Expect = 3e-23 Identities = 318/475 (67%), Gaps = 16/475 (3%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || ||||| ||||| | || | || ||||||||||| | | ||| || || Sbjct 24617 CGGTCAAAACGGCCTGGTCTAAGCAAGGCGGAGTCAAGAATATCTGCTCTGTTGGTTGCA 24558 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | | ||||| | | || ||||| ||||| || || | |||||||| Sbjct 24557 GCAACTACGATCACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAAGAGCTGGTTA 24498 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCCGAACGCT-TCT---TA 11676 | ||||||||| | ||| || || | | ||||| | || | || ||| || Sbjct 24497 AGCGTCTGTTCTCTCTCGTCATTC-----CCT-CCACCGATTCCAGTCCCTCTCTGCCTA 24444 Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCG 11736 |||||||||||||||||||| | || || || || || || | |||| || | Sbjct 24443 CCGACAGCGTCAATCTCATCAACAAAGACAATGCAGGGAGCATTCTCCTTGGCCTTTTTG 24384 Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCA 11796 ||||| ||||| || | | || |||||||| |||||||||||||| || | | || Sbjct 24383 AAAAGATCACGGACCCTCGAAGCACCAACACCGACGAACATCTCAACAAACTCAGAACCA 24324 Query 11797 GAACACTG-AATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 | | | || || || || ||| || ||||| || ||||| || | ||| || || Sbjct 24323 G-AGATTGAAAAAAAAGGCACACCAGCTTCACCGGCAATGGCCTTTGCCAAGAGTGTTTT 24265 Query 11856 ACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAA 11915 || ||||| || | |||| |||| ||| | || || ||| | || ||| || Sbjct 24264 TCCAGTACCGGGAGGACCAACGAGGAGGACACCTTTCGGAATCCTCGCGCCAACAGCAGT 24205 Query 11916 GTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC-TCAAGTTCCTCCTTGGC 11969 | | | ||||||||||||||| || ||||| | ||| | ||| || | |||||| Sbjct 24204 GAACCTCTCAGGCTTCTTGAGAAACTCCACCACTTCCATGAAG-TCTTGCTTGGC 24151 >seq9289 Length=7890 Score = 102 bits (112), Expect = 1e-16 Identities = 322/492 (65%), Gaps = 8/492 (2%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || || || ||||| | | | |||| |||||||| || | | || || || Sbjct 2877 CGGTCAAACCGTCCTGGCCTCAACAAAGCAGAGTCAAGAATGTCTGCTCTATTGGTTGCA 2936 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | || ||||| | | || || || ||||| || || || | |||||| Sbjct 2937 GCAACAACGATGATACCAGTGTTACCTTCAAACCCATCCATCTCAGTTAGCAACTGGTTC 2996 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA--CCTGCCGAACGCTTCTTACCGA 11680 | |||||||| | |||||| || | | | | |||| | | | | |||| | Sbjct 2997 AAAGTCTGTTCCCTCTCATCATT--ACCACCACCGATTCCTGTCCCTCTTTGCCTACCAA 3054 Query 11681 CAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAA 11740 |||| ||||||||||| | || || || || || ||| | |||| | ||||| Sbjct 3055 CAGCATCAATCTCATCAACAAAGACAATGCAAGGAGCGTTCTCCTTAGCCTTCTTGAAAA 3114 Query 11741 GTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAAC 11800 | ||||| || | | || |||||||| || |||||||||||||| | | | | | Sbjct 3115 GATCACGAACCCTCGAGGCACCAACACCGACAAACATCTCAACGAACTCCG-ACCCGGAG 3173 Query 11801 ACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCC 11859 | || | ||| || ||| || ||||||||||| ||| || || || ||||| || Sbjct 3174 ATGGAGAAGAACGGCACACCAGCTTCACCAGCGATAGCTTTCGCCAGAAGCGTCTTCCCA 3233 Query 11860 GTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAG 11919 ||||| || | ||| || || | || |||||| |||||| || | | Sbjct 3234 GTACCGGGAGGACCGATAAGCAGAACACCTTTCGGGATCCGAGCACCAACCGCAGTGAAC 3293 Query 11920 CGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC-TCAAGTTCCTCCTTGGCGGAGTCGAT 11978 | |||||||||||| || || || || | |||| | ||| |||| ||| || |||| Sbjct 3294 CTCTCAGGCTTCTTCAGAAACTCAACCACCTCCATGAAG-TCCTGCTTCGCTTCATCGAC 3352 Query 11979 ACCCTCAACATC 11990 ||| ||||||| Sbjct 3353 ACCAGCAACATC 3364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588499430069600