Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq521 143 3e-29
seq13279 141 1e-28
seq9582 105 8e-18
seq9289 105 8e-18
seq12321 96.9 4e-15
seq549 96.9 4e-15
>seq521
Length=33513
Score = 143 bits (158), Expect = 3e-29
Identities = 302/446 (68%), Gaps = 6/446 (1%)
Strand=Plus/Minus
Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251
|| ||||| || ||||| | ||| | ||| ||||| ||||| | | || || ||
Sbjct 24617 CGGTCAAAACGGCCTGGTCTAAGCAAGGCGGAGTCAAGAATATCTGCTCTGTTGGTTGCA 24558
Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311
|| | || | | ||| || | | ||||||||||||||||| ||||| || ||||||
Sbjct 24557 GCAACTACGATCACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAAGAGCTGGTTA 24498
Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369
| || ||||| | || |||||| || | | | |||| | | ||| | || |
Sbjct 24497 AGCGTCTGTTCTCTCTCGTCATTCCCT--CCACCGATTCCAGTCCCTCTCTGCCTACCGA 24440
Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 9429
| || ||||||||||||| |||||||| || || ||| || ||| ||| || |
Sbjct 24439 CAGCGTCAATCTCATCAACAAAGACAATGCAGGGAGCATTCTCCTTGGCCTTTTTGAAAA 24380
Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489
|||| || ||||| || || ||||| || |||||||| ||||| | | | | |
Sbjct 24379 GATCACGGACCCTCGAAGCACCAACACCGACGAACATCTCAACAAACTCAGAACCAG-AG 24321
Query 9490 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548
|||| | || || ||| || |||||| |||||||| || | || || || ||
Sbjct 24320 ATTGAAAAAAAAGGCACACCAGCTTCACCGGCAATGGCCTTTGCCAAGAGTGTTTTTCCA 24261
Query 9549 GTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTAT 9608
||||| || ||| |||||||| |||| |||||| | |||||| || | |
Sbjct 24260 GTACCGGGAGGACCAACGAGGAGGACACCTTTCGGAATCCTCGCGCCAACAGCAGTGAAC 24201
Query 9609 CTCTCAGGTTGCTTGAGAAAATCCAC 9634
|||||||| | ||||||||| |||||
Sbjct 24200 CTCTCAGGCTTCTTGAGAAACTCCAC 24175
>seq13279
Length=5599
Score = 141 bits (156), Expect = 1e-28
Identities = 305/451 (68%), Gaps = 4/451 (1%)
Strand=Plus/Minus
Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251
|| ||||| |||||||| | || | ||| ||||| |||||| | | ||| || ||
Sbjct 917 CGGTCAAAACGACCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTGGTTGCA 858
Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311
|| | |||| || ||| || | | ||||| ||||||||||| ||||| || || |||
Sbjct 857 GCAACCACAATAACACCAGTGTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGATTA 798
Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCT-GGCATACCACCAGCACTGCGTTGCTTTCCCAC 9370
| || || || | ||||||||| || | | | |||| | | ||| | || ||
Sbjct 797 AGCGTCTGCTCTCTCTCATCATTCCCTCCACCGATC-CCAGTCCCTCTCTGCCTACCAAC 739
Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430
||||||||||| || | |||||||| || || ||| || || ||| || ||
Sbjct 738 AGCATCAATCTCGTCCACAAAGACAATGCAAGGAGCATTCTCCTTAGCCTTTTTGAAAAG 679
Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9490
||| || ||||| || || ||||| ||||||||||| || || | | | | | |
Sbjct 678 ATCACGGACCCTCGAAGCACCAACACCCACAAACATCTCAACGAACTCAGAACCAG-AGA 620
Query 9491 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9549
||| | ||| || ||| || |||||| |||||||| || | ||||| ||||| |
Sbjct 619 TTGAAAAGAAAGGCACACCAGCTTCACCAGCAATGGCCTTTGCTAACAGAGTTTTACCAG 560
Query 9550 TACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTATC 9609
| || || ||| |||||||| |||| || ||| || ||| || | | |
Sbjct 559 TGCCAGGAGGACCAACGAGGAGGACACCTTTCGGGATCCGAGCACCAACCGCAGTGAACC 500
Query 9610 TCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640
||||||| | ||||||||| ||||| | |||
Sbjct 499 TCTCAGGCTTCTTGAGAAACTCCACCACCTC 469
>seq9582
Length=7681
Score = 105 bits (116), Expect = 8e-18
Identities = 219/321 (68%), Gaps = 14/321 (4%)
Strand=Plus/Plus
Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341
|| ||||||||||| ||||| || || ||||| || || |||| ||||||||| || |
Sbjct 7100 AACCCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGCTCCCTCTCATCATTCCCT--C 7157
Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399
| ||| ||||| | | ||| | ||||| |||||||||||||| || || ||||| |
Sbjct 7158 CTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCGATAAAAACAATGC 7217
Query 9400 ATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455
| || ||| ||| || | || || | ||| | |||||| || ||||||
Sbjct 7218 AAGGCGCCTTGGCCTTC----GCCTTCTCGAACAAATCCCTAACCCTAGACGCACCCACA 7273
Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9515
|| || || | ||| ||||| | | || | || || ||| || || | ||
Sbjct 7274 CCGACGAAAAGCTCAACAAACTCAGAAGCCGCGCAGGAGAAGAACGGCACTCCCGCCTCT 7333
Query 9516 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9575
|| |||| |||| || | ||||||||||| ||||| || || | |||| | ||
Sbjct 7334 CCAGCAACAGCTCTAGCTAACAGAGTCTTACCAGTACCAGGAGGCCCAACAAGGA-GACA 7392
Query 9576 CCCCGT-GGAATCTTGGCGCC 9595
||| | ||||||||||||||
Sbjct 7393 CCCTTTGGGAATCTTGGCGCC 7413
>seq9289
Length=7890
Score = 105 bits (116), Expect = 8e-18
Identities = 229/339 (68%), Gaps = 14/339 (4%)
Strand=Plus/Plus
Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284
||||| || || | | ||| || || || | || | ||||| || | | |||||
Sbjct 2910 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACAACGATGATACCAGTGTTACCTTCAAAC 2969
Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344
||||||||||| || | | ||||| | ||| ||||||| |||||||| | |
Sbjct 2970 CCATCCATCTCAGTTAGCAACTGGTTCAAAGTCTGTTCCCTCTCATCATTACC------A 3023
Query 9345 CCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398
||||| | ||| | |||| | || || |||||||||||||||| ||||||||
Sbjct 3024 CCACCGATTCCTGTCCCTCTTTGCCTACCAACAGCATCAATCTCATCAACAAAGACAATG 3083
Query 9399 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458
|| || || || || | | || ||||| |||||||| ||| || |||||
Sbjct 3084 CAAGGAGCGTTCTCCTTAGCCTTCTTGAAAAGATCACGAACCCTCGAGGCACCAACACCG 3143
Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9517
||||||||||| || || | | ||| | || | || ||| || ||| || ||||||
Sbjct 3144 ACAAACATCTCAACGAACTCCGACCCGG-AGATGGAGAAGAACGGCACACCAGCTTCACC 3202
Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556
|| || ||| || ||||| ||||| || ||||| ||
Sbjct 3203 AGCGATAGCTTTCGCCAGAAGCGTCTTCCCAGTACCGGG 3241
>seq12321
Length=6064
Score = 96.9 bits (106), Expect = 4e-15
Identities = 155/222 (70%), Gaps = 3/222 (1%)
Strand=Plus/Minus
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
||| || ||||| |||| || || || || || |||||| || || |||||||| ||
Sbjct 1373 GTGAAGCCCCTCGTCTCTCGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGCCC 1314
Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404
|||||||| | ||| | || | |||||| |||||||||||||| || || || ||
Sbjct 1313 ACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCA 1254
Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGC 117464
|| || || | | | ||| ||||| | |||| | ||| | ||| ||||| ||
Sbjct 1253 GGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 1197
Query 117465 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506
||||| ||||||||| | | || || | || | ||||||
Sbjct 1196 CCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGGC 1155
>seq549
Length=32968
Score = 96.9 bits (106), Expect = 4e-15
Identities = 140/197 (71%), Gaps = 3/197 (2%)
Strand=Plus/Minus
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
|||||| || || |||| || || || || || |||||| || || |||||||| ||
Sbjct 20325 GTGGAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGCCC 20266
Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404
|||||||||| ||| | || | |||||| || ||||||||||| || ||||| ||
Sbjct 20265 ACGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTGCCCGAGAAGAAGATCCCTTCCACGCA 20206
Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGC 117464
|| ||||| | | | ||||||||||| ||| | || | ||| |||| ||
Sbjct 20205 AGCGAACGCCACGATCCTCTCGGCGAAGGCCTGAGGC---CCATCGATCCACTTCAAGGC 20149
Query 117465 CCATTTCGCCTTCTTCT 117481
||||| ||||| ||||
Sbjct 20148 CCATTGGGCCTTTTTCT 20132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589503417035680
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