Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq521 143 3e-29 seq13279 141 1e-28 seq9582 105 8e-18 seq9289 105 8e-18 seq12321 96.9 4e-15 seq549 96.9 4e-15 >seq521 Length=33513 Score = 143 bits (158), Expect = 3e-29 Identities = 302/446 (68%), Gaps = 6/446 (1%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || ||||| | ||| | ||| ||||| ||||| | | || || || Sbjct 24617 CGGTCAAAACGGCCTGGTCTAAGCAAGGCGGAGTCAAGAATATCTGCTCTGTTGGTTGCA 24558 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | | ||| || | | ||||||||||||||||| ||||| || |||||| Sbjct 24557 GCAACTACGATCACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAAGAGCTGGTTA 24498 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369 | || ||||| | || |||||| || | | | |||| | | ||| | || | Sbjct 24497 AGCGTCTGTTCTCTCTCGTCATTCCCT--CCACCGATTCCAGTCCCTCTCTGCCTACCGA 24440 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 9429 | || ||||||||||||| |||||||| || || ||| || ||| ||| || | Sbjct 24439 CAGCGTCAATCTCATCAACAAAGACAATGCAGGGAGCATTCTCCTTGGCCTTTTTGAAAA 24380 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489 |||| || ||||| || || ||||| || |||||||| ||||| | | | | | Sbjct 24379 GATCACGGACCCTCGAAGCACCAACACCGACGAACATCTCAACAAACTCAGAACCAG-AG 24321 Query 9490 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 |||| | || || ||| || |||||| |||||||| || | || || || || Sbjct 24320 ATTGAAAAAAAAGGCACACCAGCTTCACCGGCAATGGCCTTTGCCAAGAGTGTTTTTCCA 24261 Query 9549 GTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTAT 9608 ||||| || ||| |||||||| |||| |||||| | |||||| || | | Sbjct 24260 GTACCGGGAGGACCAACGAGGAGGACACCTTTCGGAATCCTCGCGCCAACAGCAGTGAAC 24201 Query 9609 CTCTCAGGTTGCTTGAGAAAATCCAC 9634 |||||||| | ||||||||| ||||| Sbjct 24200 CTCTCAGGCTTCTTGAGAAACTCCAC 24175 >seq13279 Length=5599 Score = 141 bits (156), Expect = 1e-28 Identities = 305/451 (68%), Gaps = 4/451 (1%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| |||||||| | || | ||| ||||| |||||| | | ||| || || Sbjct 917 CGGTCAAAACGACCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTGGTTGCA 858 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | |||| || ||| || | | ||||| ||||||||||| ||||| || || ||| Sbjct 857 GCAACCACAATAACACCAGTGTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGATTA 798 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCT-GGCATACCACCAGCACTGCGTTGCTTTCCCAC 9370 | || || || | ||||||||| || | | | |||| | | ||| | || || Sbjct 797 AGCGTCTGCTCTCTCTCATCATTCCCTCCACCGATC-CCAGTCCCTCTCTGCCTACCAAC 739 Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430 ||||||||||| || | |||||||| || || ||| || || ||| || || Sbjct 738 AGCATCAATCTCGTCCACAAAGACAATGCAAGGAGCATTCTCCTTAGCCTTTTTGAAAAG 679 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9490 ||| || ||||| || || ||||| ||||||||||| || || | | | | | | Sbjct 678 ATCACGGACCCTCGAAGCACCAACACCCACAAACATCTCAACGAACTCAGAACCAG-AGA 620 Query 9491 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9549 ||| | ||| || ||| || |||||| |||||||| || | ||||| ||||| | Sbjct 619 TTGAAAAGAAAGGCACACCAGCTTCACCAGCAATGGCCTTTGCTAACAGAGTTTTACCAG 560 Query 9550 TACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTATC 9609 | || || ||| |||||||| |||| || ||| || ||| || | | | Sbjct 559 TGCCAGGAGGACCAACGAGGAGGACACCTTTCGGGATCCGAGCACCAACCGCAGTGAACC 500 Query 9610 TCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 ||||||| | ||||||||| ||||| | ||| Sbjct 499 TCTCAGGCTTCTTGAGAAACTCCACCACCTC 469 >seq9582 Length=7681 Score = 105 bits (116), Expect = 8e-18 Identities = 219/321 (68%), Gaps = 14/321 (4%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || ||||||||||| ||||| || || ||||| || || |||| ||||||||| || | Sbjct 7100 AACCCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGCTCCCTCTCATCATTCCCT--C 7157 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | ||| ||||| | | ||| | ||||| |||||||||||||| || || ||||| | Sbjct 7158 CTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCGATAAAAACAATGC 7217 Query 9400 ATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455 | || ||| ||| || | || || | ||| | |||||| || |||||| Sbjct 7218 AAGGCGCCTTGGCCTTC----GCCTTCTCGAACAAATCCCTAACCCTAGACGCACCCACA 7273 Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9515 || || || | ||| ||||| | | || | || || ||| || || | || Sbjct 7274 CCGACGAAAAGCTCAACAAACTCAGAAGCCGCGCAGGAGAAGAACGGCACTCCCGCCTCT 7333 Query 9516 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9575 || |||| |||| || | ||||||||||| ||||| || || | |||| | || Sbjct 7334 CCAGCAACAGCTCTAGCTAACAGAGTCTTACCAGTACCAGGAGGCCCAACAAGGA-GACA 7392 Query 9576 CCCCGT-GGAATCTTGGCGCC 9595 ||| | |||||||||||||| Sbjct 7393 CCCTTTGGGAATCTTGGCGCC 7413 >seq9289 Length=7890 Score = 105 bits (116), Expect = 8e-18 Identities = 229/339 (68%), Gaps = 14/339 (4%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | | ||| || || || | || | ||||| || | | ||||| Sbjct 2910 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACAACGATGATACCAGTGTTACCTTCAAAC 2969 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 ||||||||||| || | | ||||| | ||| ||||||| |||||||| | | Sbjct 2970 CCATCCATCTCAGTTAGCAACTGGTTCAAAGTCTGTTCCCTCTCATCATTACC------A 3023 Query 9345 CCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 ||||| | ||| | |||| | || || |||||||||||||||| |||||||| Sbjct 3024 CCACCGATTCCTGTCCCTCTTTGCCTACCAACAGCATCAATCTCATCAACAAAGACAATG 3083 Query 9399 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458 || || || || || | | || ||||| |||||||| ||| || ||||| Sbjct 3084 CAAGGAGCGTTCTCCTTAGCCTTCTTGAAAAGATCACGAACCCTCGAGGCACCAACACCG 3143 Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9517 ||||||||||| || || | | ||| | || | || ||| || ||| || |||||| Sbjct 3144 ACAAACATCTCAACGAACTCCGACCCGG-AGATGGAGAAGAACGGCACACCAGCTTCACC 3202 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || || ||| || ||||| ||||| || ||||| || Sbjct 3203 AGCGATAGCTTTCGCCAGAAGCGTCTTCCCAGTACCGGG 3241 >seq12321 Length=6064 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| |||| || || || || || |||||| || || |||||||| || Sbjct 1373 GTGAAGCCCCTCGTCTCTCGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGCCC 1314 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || | |||||| |||||||||||||| || || || || Sbjct 1313 ACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCA 1254 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGC 117464 || || || | | | ||| ||||| | |||| | ||| | ||| ||||| || Sbjct 1253 GGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 1197 Query 117465 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 ||||| ||||||||| | | || || | || | |||||| Sbjct 1196 CCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGGC 1155 >seq549 Length=32968 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/197 (71%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| || || |||| || || || || || |||||| || || |||||||| || Sbjct 20325 GTGGAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGCCC 20266 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||||| ||| | || | |||||| || ||||||||||| || ||||| || Sbjct 20265 ACGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTGCCCGAGAAGAAGATCCCTTCCACGCA 20206 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGC 117464 || ||||| | | | ||||||||||| ||| | || | ||| |||| || Sbjct 20205 AGCGAACGCCACGATCCTCTCGGCGAAGGCCTGAGGC---CCATCGATCCACTTCAAGGC 20149 Query 117465 CCATTTCGCCTTCTTCT 117481 ||||| ||||| |||| Sbjct 20148 CCATTGGGCCTTTTTCT 20132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589503417035680