Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_015279.1
Length=190789
Score E
Sequences producing significant alignments: (Bits) Value
seq6139 587 9e-163
seq43812 383 2e-101
seq12239 235 7e-57
seq18917 228 1e-54
seq10249 123 3e-23
seq4821 114 2e-20
seq10427 109 7e-19
seq8879 89.7 6e-13
seq11249 82.4 9e-11
>seq6139
Length=10899
Score = 587 bits (650), Expect = 9e-163
Identities = 740/1014 (73%), Gaps = 2/1014 (0%)
Strand=Plus/Plus
Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483
||||| || | ||||||||| | | |||||||| || ||||| || ||||||||
Sbjct 5076 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 5135
Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543
||| | || ||||| ||| ||| | || | ||||| ||| |||| || || || |||
Sbjct 5136 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 5195
Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTT 181603
|| || || ||||| || || |||||||| |||||| | || ||| ||||| |
Sbjct 5196 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 5255
Query 181604 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 181663
|| || || || || || |||||| | | | | |||||| | | |||| ||||||
Sbjct 5256 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 5315
Query 181664 CCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTG 181723
|||||||| || || ||||| || ||| ||| | || || || |||||||||||
Sbjct 5316 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 5375
Query 181724 GCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG- 181782
|| |||||||| || ||||| | || ||||||||| | | |||||||||||||||||
Sbjct 5376 GCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 5435
Query 181783 TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGT 181842
||| || | | ||||| || ||||| || || || || ||||| |||||||| || ||
Sbjct 5436 TCTGTTCA-ATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 5494
Query 181843 CTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGG 181902
||||| ||||| || ||||| || || ||||| |||||||||||||||| ||||| ||
Sbjct 5495 TTCTGTCTTTCTAATTTATCCACTAGGTCAATCGGGTTGGTTCTTTGCGCCTAGTTTTGG 5554
Query 181903 TGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAA 181962
||| ||||| || || || ||| | ||||| |||| || |||||||||||||| | ||
Sbjct 5555 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 5614
Query 181963 TCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCA 182022
|| || ||||||||||| || |||||| | ||||| | || | | | || |||||
Sbjct 5615 CCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCA 5674
Query 182023 CGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGC 182082
|||| || || || |||||| | | | |||| ||||| |||||||| ||| ||
Sbjct 5675 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 5734
Query 182083 ATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTC 182142
|| | ||||||||| |||||||| ||||||||||| || || |||||||| |||||
Sbjct 5735 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 5794
Query 182143 TCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 182202
|| ||||| || |||| ||| |||||| | ||||| |||||||||||| | |||||
Sbjct 5795 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 5854
Query 182203 TCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 182262
|| || | ||| | |||| ||| | | || | | ||||| ||| | ||||| ||
Sbjct 5855 ACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACG 5914
Query 182263 TGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTT 182322
||| |||||||| || ||||| |||||| | ||| | ||||| || || || ||||| ||
Sbjct 5915 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 5974
Query 182323 CTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCA 182382
||| || || || ||||| || || |||||| | || || ||| | || | |||||
Sbjct 5975 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCA 6034
Query 182383 ACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436
|| ||||| ||| || | ||||||||||| || |||| | || ||||| ||
Sbjct 6035 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 6088
>seq43812
Length=736
Score = 383 bits (424), Expect = 2e-101
Identities = 431/577 (75%), Gaps = 0/577 (0%)
Strand=Plus/Plus
Query 180166 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCA 180225
|||| ||| | |||| || | |||||||| || ||||| | ||||| || || |
Sbjct 1 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 60
Query 180226 TTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCACC 180285
| ||||| || ||||||| ||| |||| ||||| || ||||||||||| || |||||||
Sbjct 61 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 120
Query 180286 CCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCACG 180345
| || |||||| | || ||||| ||||| |||||||| || || || || ||||| |
Sbjct 121 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 180
Query 180346 GTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTACG 180405
|||| |||| || ||| || | | |||||||| |||| ||| || || | |
Sbjct 181 GTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 240
Query 180406 GTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATACTTCG 180465
| |||| || |||||||||||||| || |||||||| || ||||| || || || || |
Sbjct 241 GGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 300
Query 180466 GTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTGG 180525
| || |||||||||| ||||| |||||||| || ||||| | || |||||| | |
Sbjct 301 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 360
Query 180526 CAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCA 180585
| || ||||| || || || || ||||| ||||| | || | || || ||||| ||||
Sbjct 361 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 420
Query 180586 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACA 180645
|||| || |||||||| |||||||| || | ||||| ||||||| ||||| | || |
Sbjct 421 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 480
Query 180646 CTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATG 180705
||||||| || | | ||||| ||| || ||||||||||||||||| || |||||||
Sbjct 481 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 540
Query 180706 CTCACAACTTCCCACTTGACCTGGCAGCTGCTGAGTC 180742
||||||||||||| || ||||| || |||| ||||||
Sbjct 541 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 577
>seq12239
Length=6102
Score = 235 bits (260), Expect = 7e-57
Identities = 390/558 (70%), Gaps = 4/558 (1%)
Strand=Plus/Minus
Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483
||||| || ||||||||||| | | |||||||| || ||||| || ||||||||
Sbjct 623 TTTGATATTATTGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 564
Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543
||| | || ||||| ||| ||| | || | ||||| ||| |||| || || || |||
Sbjct 563 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 504
Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTT 181603
|| || || ||||| | || |||||||| || ||| | || ||| | | | |
Sbjct 503 GTAACTTCATGGTATATTCATGGATTGGCTAGTTTCTATTTAGAAGGTTGCAGTCTTTTA 444
Query 181604 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 181663
|| | || || || || |||||| | | | | |||||| | | |||| | ||||
Sbjct 443 ACCGATGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTGT-GGGT 385
Query 181664 CCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTG 181723
| |||||| || || ||||| || ||| ||| | || || |||| ||||||
Sbjct 384 CATGAAGCACAAGGAGATTTTAGTCGTTGGTGTCAATTAAACGGCCTGTGGGTTTTTGTT 325
Query 181724 GCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG- 181782
| |||||| | || ||||| | || ||||||||| | | |||||||||||||||||
Sbjct 324 TCTCTCCACAGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 265
Query 181783 TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGT 181842
||| || | | |||| || ||||| || || || || ||||| ||||||| || |
Sbjct 264 TCTGTTC-AATTGTGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGGTTTTAT 206
Query 181843 CTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGG 181902
||| ||||| || ||||||| || ||||| ||||||||||||| || ||||| ||
Sbjct 205 TCCTGCCTTTCTAATTTATCCTC-AGGTCAATCTGGTTGGTTCTTTGCACCTAGTTTTGG 147
Query 181903 TGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAA 181962
||| |||| || || || ||| | ||||| |||| | ||| |||||||||| | ||
Sbjct 146 TGTAGCGGTTATATTTCGGTTCATCCTCTTTTTCCAAGAGTTTTATAATTGGACATTGAA 87
Query 181963 TCCCTTCCATATGATGGG 181980
| | |||||||||||
Sbjct 86 CCATCTACATATGATGGG 69
>seq18917
Length=3610
Score = 228 bits (252), Expect = 1e-54
Identities = 306/423 (72%), Gaps = 2/423 (0%)
Strand=Plus/Plus
Query 179739 TGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 179798
|||| | |||||| | ||| |||| |||| | ||||| || || | || |||||
Sbjct 3184 TGGGGTCGCTTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATTGGATGGTTT 3243
Query 179799 GGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATC 179858
|| ||| |||||||||| || | ||| | |||||| | || || |||| |||||
Sbjct 3244 GGTGTTTTGATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATT 3303
Query 179859 GCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTAT 179918
|||||||| || || || || ||||| || |||||||| || |||| || || | ||
Sbjct 3304 GCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTAC 3363
Query 179919 GGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTC 179978
|| ||||| || || || ||||| || ||||| |||| || |||||| | || ||
Sbjct 3364 GGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTT 3423
Query 179979 TATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAA 180038
||||| ||||||||||| ||||| |||| || ||||| || ||||||||||||| ||
Sbjct 3424 TATCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAA 3483
Query 180039 CTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTT 180098
|| | || | ||||| | |||| | | || |||||||||||||||||||||
Sbjct 3484 CTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTT 3543
Query 180099 TCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTGC 180157
|| || |||||||||| || ||||| ||| || |||||||| ||||| || || ||
Sbjct 3544 AGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGC 3602
Query 180158 AGC 180160
||
Sbjct 3603 TGC 3605
>seq10249
Length=7246
Score = 123 bits (136), Expect = 3e-23
Identities = 131/173 (76%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 171909 CTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGT 171968
|| |||||||| || ||||| ||| | || || || || |||||||||||| | ||
Sbjct 5644 CTCGACGCTGCGGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGTTCTTGC 5703
Query 171969 TCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTT 172028
|| ||||| || |||||| ||| | |||||| || || ||||| || || ||||||
Sbjct 5704 TCGAGCTGCGCAGGTAAAGTTGTGTCTGGTACCGTTGACCAGTCTGACCAGAGTTTCCTC 5763
Query 172029 GATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081
|||||||| || || | | |||||||||||| || |||| |||||||||||
Sbjct 5764 GATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTAC 5816
>seq4821
Length=12785
Score = 114 bits (126), Expect = 2e-20
Identities = 129/173 (75%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 171909 CTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGT 171968
|| |||||||| || ||||| || |||| || || || |||||||| ||| | ||
Sbjct 11176 CTCGACGCTGCTGAGGAAGCAGGAATTGACTTGCCTTACTCTTGCCGTGCTGGTTCTTGC 11117
Query 171969 TCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTT 172028
|| |||||||| |||||| ||| | ||| | || || ||||| || || ||||||
Sbjct 11116 TCGAGCTGTGCCGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTC 11057
Query 172029 GATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081
|||||||| || || | | |||||||||||| || |||| |||||||||||
Sbjct 11056 GATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTAC 11004
>seq10427
Length=7142
Score = 109 bits (120), Expect = 7e-19
Identities = 128/173 (74%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 171909 CTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGT 171968
|| |||||||| || ||||| || | || || || || |||||||| ||| | ||
Sbjct 1512 CTCGACGCTGCTGAGGAAGCAGGAATCGACTTGCCTTACTCTTGCCGTGCTGGTTCTTGC 1453
Query 171969 TCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTT 172028
|| |||||||| |||||| ||| | ||| | || || ||||| || || ||||||
Sbjct 1452 TCGAGCTGTGCCGGTAAAGTTGTGTCTGGATCAGTTGACCAGTCTGACCAGAGTTTCCTC 1393
Query 172029 GATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081
|||||||| || || | | |||||||||||| || |||| |||||||||||
Sbjct 1392 GATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTAC 1340
>seq8879
Length=8198
Score = 89.7 bits (98), Expect = 6e-13
Identities = 116/158 (73%), Gaps = 3/158 (2%)
Strand=Plus/Minus
Query 181826 CCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTC 181885
|| |||||||| || || | || ||||| || ||||| | | |||| |||||||
Sbjct 6989 CCAATTGCTGTTTTTGTTT--GTCTTTCTAATTTATCCATTATGTCAATGTGGTTGGTTA 6932
Query 181886 TTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTT 181945
|||||||| ||||| ||||| | ||| || || || ||| ||||||| || | || |||
Sbjct 6931 TTTGCGCCTAGTTTTGGTGTAGTGGCTATATTTCGATTCATTCTCTTTTTCAAAGG-TTT 6873
Query 181946 CATAATTGGACGCTCAATCCCTTCCATATGATGGGTGT 181983
||||||||||| | || | | |||||||| || ||
Sbjct 6872 CATAATTGGACATTGAACCTAATTCATATGATAGGAGT 6835
>seq11249
Length=6651
Score = 82.4 bits (90), Expect = 9e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313
|||||||||||||||| || ||||| | || ||||||| | ||||||||||||| |||
Sbjct 963 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTAGGTTCGAAT 904
Query 141314 CCTACCTGGGGAG 141326
||||| |||||||
Sbjct 903 CCTACTTGGGGAG 891
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 609902897429280
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