Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_015281.1
Length=179563
Score E
Sequences producing significant alignments: (Bits) Value
seq6139 526 2e-144
seq43812 396 3e-105
seq18917 196 6e-45
seq12239 187 3e-42
>seq6139
Length=10899
Score = 526 bits (582), Expect = 2e-144
Identities = 727/1016 (72%), Gaps = 6/1016 (1%)
Strand=Plus/Plus
Query 169307 TTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGT 169366
|| ||| || | ||||||||| | | |||||||| || || | ||||||||||||
Sbjct 5076 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 5135
Query 169367 CTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTT 169426
||| | || |||| ||||||| | ||| | || || ||| |||| |||||| | |||
Sbjct 5136 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 5195
Query 169427 GTTACTTCCTGGTACACCCACGGACTCGC---TTCCAGTTACTTAGAAGGCGCTAACTTC 169483
|| ||||| ||||| || || ||| | || |||| || |||||||| || ||
Sbjct 5196 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCC---TATTTAGAAGGTTGCAATTTT 5252
Query 169484 CTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGG 169543
| || ||||| || ||| |||||| | | | | || || || | || || |||
Sbjct 5253 TTAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGG 5312
Query 169544 GGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTT 169603
||||| ||||||||||| ||||| ||| ||||||||||| || ||||| ||| |||
Sbjct 5313 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTT 5372
Query 169604 GTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCA 169663
|| || || || ||||| || ||||| || ||||| ||| | | || |||||| | ||
Sbjct 5373 GTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCT 5432
Query 169664 CGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTT 169723
|| | || | || ||||||||||| || |||||||||||||| |||||||| |||
Sbjct 5433 CGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTT 5492
Query 169724 GTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTT 169783
|| ||||||||| || || ||||| || || || ||||||||||| || |||
Sbjct 5493 GTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCGGGTTGGTTCTTTGCGCCTAGTTTT 5552
Query 169784 GGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTG 169843
|| ||| | || || || | ||| | | || | ||||| || || || ||||| |||
Sbjct 5553 GGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTG 5612
Query 169844 AATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATC 169903
|| ||||| || |||||||| || || || | |||||| || || | | |||||
Sbjct 5613 AACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATT 5672
Query 169904 CATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAG 169963
||||||| ||| ||||| || || || | |||||| ||||| |||||||| |||
Sbjct 5673 CATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGT 5732
Query 169964 GCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 170023
|| ||| | | || || | ||||| |||||||| |||||||| || |||||||| |||
Sbjct 5733 GCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 5792
Query 170024 TCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTT 170083
|| || ||||| || |||| ||||| || || |||||| | ||||| || ||||| |||
Sbjct 5793 TCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 5852
Query 170084 GTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTT 170143
|| || || | ||| | |||| || |||| | | || || ||| | || ||
Sbjct 5853 GTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTA 5912
Query 170144 CGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACC 170203
||||| || || ||||| ||||| ||| | ||||| |||||||| |||||||||||
Sbjct 5913 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACT 5972
Query 170204 TTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGAT 170263
||||| || ||||| || || || || ||||| |||| || ||| |||| || |||
Sbjct 5973 TTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGAT 6032
Query 170264 CAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319
|| || ||||||||| | || ||||| || || ||||| || | || ||||| ||
Sbjct 6033 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 6088
>seq43812
Length=736
Score = 396 bits (438), Expect = 3e-105
Identities = 420/554 (76%), Gaps = 0/554 (0%)
Strand=Plus/Plus
Query 168304 GGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATG 168363
|||||||| ||||| ||||||| ||||| || |||||||| || || ||||||| |||
Sbjct 24 GGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATG 83
Query 168364 TTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT 168423
| || ||||| ||||||||||| ||||| ||||| || || || ||| | || || |||
Sbjct 84 ATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCT 143
Query 168424 GGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTC 168483
|| ||||| || ||| | |||||||||||||| || |||||| |||||| | |
Sbjct 144 GGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTG 203
Query 168484 GTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAA 168543
| || || || || |||| ||||| || | || |||| ||||| |||||||||
Sbjct 204 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGGTACAGATTCGGTCAAGAAGAA 263
Query 168544 GAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCT 168603
||||| |||||||| ||||| ||||| ||||| || || || |||||||||||||| |||
Sbjct 264 GAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCT 323
Query 168604 TCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATC 168663
|||||||| || || || || || |||||| | || || ||||| || || || ||
Sbjct 324 AGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATT 383
Query 168664 TGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAAC 168723
||||| || || | || | || ||||| |||||||| || |||||||| ||||||
Sbjct 384 TGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAAC 443
Query 168724 CAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGC 168783
|| || | ||||| |||| || ||||| | || || ||||| ||| || | |||||
Sbjct 444 CAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGT 503
Query 168784 GCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTT 168843
||| || |||||||||||||||||||| ||||| || ||||||||||| || || ||
Sbjct 504 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTA 563
Query 168844 GCTGCTGCTGAGTC 168857
||||||| ||||||
Sbjct 564 GCTGCTGTTGAGTC 577
>seq18917
Length=3610
Score = 196 bits (216), Expect = 6e-45
Identities = 275/386 (71%), Gaps = 0/386 (0%)
Strand=Plus/Plus
Query 167890 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 167949
||||| || || | || ||||| || || |||||||||| || | ||| | ||||||
Sbjct 3220 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCAACT 3279
Query 167950 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 168009
| ||| || |||| ||| | |||||||| || || || || || || || ||||||
Sbjct 3280 TCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 3339
Query 168010 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTCCCTTCT 168069
|| || |||| || || | || || ||||| || || || ||||| || | ||| ||
Sbjct 3340 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACT 3399
Query 168070 TCTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGG 168129
||| |||||||| | || || ||||| ||||||||||| ||||| | ||||| |||
Sbjct 3400 TCTGCAGCTATTGGTTTGCATTTTTATCCGATCTGGGAAGCTGCATCCGTTGATGAATGG 3459
Query 168130 TTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTTCCTCATCGGTATCTATGCA 168189
| || ||||||||||||| ||||| | || | ||||| | | ||| | |
Sbjct 3460 CTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 3519
Query 168190 TACATGGGACGTGAATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTGTT 168249
|| ||||| ||||| ||||||||| | ||| | ||||||||||| ||||| ||||
Sbjct 3520 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 3579
Query 168250 GCATACTCTGCACCAGTCGCTGCAGC 168275
||||| || || || || || || ||
Sbjct 3580 GCATATTCAGCTCCTGTTGCAGCTGC 3605
>seq12239
Length=6102
Score = 187 bits (206), Expect = 3e-42
Identities = 384/562 (68%), Gaps = 12/562 (2%)
Strand=Plus/Minus
Query 169307 TTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGT 169366
|| ||| || | ||||||||| | | |||||||| || || | ||||||||||||
Sbjct 623 TTTGATATTATTGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 564
Query 169367 CTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTT 169426
||| | || |||| ||||||| | ||| | || || ||| |||| |||||| | |||
Sbjct 563 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 504
Query 169427 GTTACTTCCTGGTACACCCACGGACTCGCTTCCAGT---TACTTAGAAGG-CGCTAACTT 169482
|| ||||| ||||| | || ||| | ||| ||| || |||||||| || |||
Sbjct 503 GTAACTTCATGGTATATTCATGGATTGGCT---AGTTTCTATTTAGAAGGTTGCAGTCTT 447
Query 169483 CCTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATG 169542
| || | ||| || ||| |||||| | | | | || || || | || || |
Sbjct 446 -TTAACCGATGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTGT- 389
Query 169543 GGGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTT 169602
||||| ||||||||||| ||||| ||| ||||||||||| || || ||| ||
Sbjct 388 GGGTCATGAAGCACAAGGAGATTTTAGTCGTTGGTGTCAATTAAACGGCCTGTGGGTTTT 329
Query 169603 TGTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGC 169662
||| | || || |||| || ||||| || ||||| ||| | | || |||||| | ||
Sbjct 328 TGTTTCTCTCCACAGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGC 269
Query 169663 ACGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATT 169722
|| | || | | ||||||||||| || |||||||||||||| ||||||| ||
Sbjct 268 TCGATCTGTTCAATTGTGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGGTTT 209
Query 169723 TGTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTT 169782
| | || |||||| || || || | || || || ||||||||||| || ||
Sbjct 208 TATTCCTGCCTTTCTAATTTATCCTC-AGGTCAATCTGGTTGGTTCTTTGCACCTAGTTT 150
Query 169783 TGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTT 169842
||| ||| | | || || ||||| | | || | |||| || | || ||||| ||
Sbjct 149 TGGTGTAGCGGTTATATTTCGGTTCATCCTCTTTTTCCAAGAGTTTTATAATTGGACATT 90
Query 169843 GAATCCAT-TCCACATGATGGG 169863
||| |||| | || ||||||||
Sbjct 89 GAA-CCATCTACATATGATGGG 69
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 574008764686560
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