Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq43812 385 6e-102 seq6139 372 4e-98 seq18917 138 1e-27 seq12239 132 6e-26 seq2063 89.7 6e-13 seq49459 84.2 3e-11 >seq43812 Length=736 Score = 385 bits (426), Expect = 6e-102 Identities = 434/581 (75%), Gaps = 0/581 (0%) Strand=Plus/Plus Query 172238 CTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 172297 |||| ||| | | || ||| | ||||| || || |||||||||||||| ||||| | Sbjct 1 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 60 Query 172298 TCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATC 172357 |||| ||||| |||||||||||| | || ||||| || ||||| |||||||| ||||| | Sbjct 61 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 120 Query 172358 CTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACG 172417 | || |||||| ||| ||||| || | || || || || |||| || ||||| | Sbjct 121 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 180 Query 172418 GTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACG 172477 ||||||| || || ||| | | ||||| || || || ||| ||||| || | | Sbjct 181 GTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 240 Query 172478 GATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTG 172537 | |||| ||||| |||||||||||||| |||||||| ||||| || |||||||| |||| Sbjct 241 GGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 300 Query 172538 GTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAG 172597 | || | |||||||| |||||| ||||||||| || | | | || |||||| ||| Sbjct 301 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 360 Query 172598 CAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCA 172657 | | || || || ||| || | ||||| || || | ||||| |||| ||||| |||| Sbjct 361 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 420 Query 172658 ACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTA 172717 |||| || |||||||| |||||||||||||| || ||| | | || || || || Sbjct 421 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 480 Query 172718 CATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATG 172777 | |||| ||| || ||||| | || ||||| ||||||||||||||||||||| | |||| Sbjct 481 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 540 Query 172778 CACACAACTTCCCATTAGACCTTGCTTCTGCAGAGTCTTCA 172818 | ||||||||||| ||||||| ||| ||| |||||| || Sbjct 541 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTCTCCA 581 >seq6139 Length=10899 Score = 372 bits (412), Expect = 4e-98 Identities = 703/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || ||||||||| ||| || || ||||| || | || ||||||||| Sbjct 5076 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 5135 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | |||||||| || | || | || ||||||||| ||| || ||||| Sbjct 5136 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 5195 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || ||||||||||| ||||| | || ||| ||| | ||||| || |||||| Sbjct 5196 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 5255 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 173190 || || ||||| || || |||| | | | ||| | | |||| || ||||| Sbjct 5256 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 5315 Query 173191 CCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTTTGTA 173250 |||||||||||||| || ||||||| ||| | || || || ||| ||||| Sbjct 5316 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 5375 Query 173251 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGA 173310 || | || || | || | | | |||||||| ||| | ||||| ||||| | || || Sbjct 5376 GCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 5435 Query 173311 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 173370 ||| | ||||||| || ||| |||||||||||| | || || || || | Sbjct 5436 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 5495 Query 173371 AGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGT 173430 ||||| |||| || |||||||| || |||||||||| || ||| || ||| Sbjct 5496 TCTGTCTTTCTAATTTATCCACTAGGTCAATCGGGTTGGTTCTTTGCGCCTAGTTTTGGT 5555 Query 173431 GTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 173490 || || || || ||||| | ||| | || | ||||| || || || |||||||| Sbjct 5556 GTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 5615 Query 173491 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCAT 173550 |||||||| |||||||| || || || |||| || | || | |||| || |||||| Sbjct 5616 CCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCAT 5675 Query 173551 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAAGATT 173610 ||||| || || | || || || | ||||| || ||| ||| Sbjct 5676 GGTGCTACTGTAGAAAATACTTTATTTGAAG------------ATGGTGATGGT------ 5717 Query 173611 CAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGATT 173670 | | || ||| | || ||| | || || || | |||||||||||| ||| | Sbjct 5718 ---GCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTC 5774 Query 173671 ACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTA 173730 || || ||| | || |||||||| || ||||| | || ||||| || ||| | | ||| Sbjct 5775 ACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 5834 Query 173731 CACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTA 173790 || ||| | ||||| || ||||| || | ||| | |||| | | || | || Sbjct 5835 CATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTC 5894 Query 173791 GGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 173850 ||||| || | ||||| | || || ||||| || || || || || | ||||| ||| Sbjct 5895 GGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAA 5954 Query 173851 GATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 173910 ||||| || || ||||||||||| ||||| ||||| ||| | || |||||||| | || Sbjct 5955 GATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCT 6014 Query 173911 TGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCA 173970 |||||| | || |||||| || ||||| ||| | |||| || || || || ||||| Sbjct 6015 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 6074 Query 173971 AGAGGTAACGCACTTTAA 173988 | || ||||| |||||| Sbjct 6075 CGTGGAAACGCTCTTTAA 6092 >seq18917 Length=3610 Score = 138 bits (152), Expect = 1e-27 Identities = 260/380 (68%), Gaps = 2/380 (1%) Strand=Plus/Plus Query 171854 TTTATGTTGGTTGGTTCGGTGTACTCATGATCCCATGTTTGCTCACAGCAGCAGCATGCT 171913 |||| |||| ||||| ||||| | ||||| || || | || ||| | | | Sbjct 3227 TTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCAACTTCCGTTT 3286 Query 171914 TCATCGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTG 171973 | || | ||||||||||| || ||||| || ||||| || || || | ||||| ||| Sbjct 3287 TTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTT 3346 Query 171974 CGGGTTCT-TTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAAC 172032 | || ||| ||||| || || ||||| || || || ||||| || |||| | || Sbjct 3347 CTGGATCTCTTCTT-TACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCA 3405 Query 172033 GCAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTAC 172092 || || ||| | || || || || ||||||||||| ||| |||| ||||||||| | ||| Sbjct 3406 GCTATTGGTTTGCATTTTTATCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATAC 3465 Query 172093 AATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATG 172152 || |||||||||||| | | | | | ||||| | | ||| | | || ||| Sbjct 3466 AACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATG 3525 Query 172153 GGAAGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATAT 172212 || | |||||||||| | | | | |||||| | || ||||| ||| |||||| Sbjct 3526 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 3585 Query 172213 TCAGCACCTGTATCAGCAGC 172232 ||||| ||||| |||| || Sbjct 3586 TCAGCTCCTGTTGCAGCTGC 3605 >seq12239 Length=6102 Score = 132 bits (146), Expect = 6e-26 Identities = 373/562 (66%), Gaps = 12/562 (2%) Strand=Plus/Minus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || |||| ||||||||| ||| || || ||||| || | || ||||||||| Sbjct 623 TTTGATATTATTGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 564 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | |||||||| || | || | || ||||||||| ||| || ||||| Sbjct 563 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 504 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGG-AGCAAACTTTTT 173129 || || |||||||||| ||||| | || || ||| | ||||| ||| | |||| Sbjct 503 GTAACTTCATGGTATATTCATGGATTGGCTAGTTTCTATTTAGAAGGTTGCAGTC-TTTT 445 Query 173130 AACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGG 173189 ||| | ||||| || || |||| | | | ||| | | | || || | ||| Sbjct 444 AACCGATGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTGT-GGG 386 Query 173190 ACCTGAAGCACAAGG---TTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTT 173246 | |||||||||||| || || || ||||||| ||| | || || ||| || Sbjct 385 TCATGAAGCACAAGGAGATT--TTAGT-CGTTGGTGTCAATTAAACGGCCTGTGGGTTTT 329 Query 173247 TGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGC 173306 ||| | | || | | || | | | |||||||| ||| | ||||| ||||| | || Sbjct 328 TGTTTCTCTCCACAGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGC 269 Query 173307 AGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTT 173366 || ||| | ||||||| || ||| |||||||||||| | || || | || Sbjct 268 TCGATCTGTTCAATTGTGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGGTTT 209 Query 173367 CACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATT 173426 | | |||| |||| || || | ||| || |||||||||| |||||| || Sbjct 208 TATTCCTGCCTTTCTAATTTATCCTC-AGGTCAATCTGGTTGGTTCTTTGCACCTAGTTT 150 Query 173427 CGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATT 173486 ||||| || | || ||||| | ||| | || | |||| || | || ||||| Sbjct 149 TGGTGTAGCGGTTATATTTCGGTTCATCCTCTTTTTCCAAGAGTTTTATAATTGGACATT 90 Query 173487 GAATCCAT-TTCACATGATGGG 173507 ||| |||| | || |||||||| Sbjct 89 GAA-CCATCTACATATGATGGG 69 >seq2063 Length=19953 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| || ||||| || ||||| || | || ||||| ||||||||||| ||||||||||| Sbjct 6551 TGGAGCGGATGTGTGCCATCTCAATCTCCACAAGACTTTCTGTATTCCTCATGGAGGTGG 6492 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTT 159801 || ||||| | ||||| |||||||| |||||| | |||||||| Sbjct 6491 TGGGCCTGGAATGGGTCCCATTGGTGTGAAGAAACATTTAGCACCATTT 6443 >seq49459 Length=611 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 172273 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAA 172332 || |||||||||||||| ||||| ||||| ||||| |||||||||||| | || ||||| Sbjct 489 TTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAG 548 Query 172333 GCAGAGCATAACAT 172346 || ||||| ||||| Sbjct 549 GCTGAGCACAACAT 562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587575378371520