Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq6139 511 5e-140 seq43812 383 2e-101 seq18917 217 2e-51 seq12239 214 2e-50 >seq6139 Length=10899 Score = 511 bits (566), Expect = 5e-140 Identities = 731/1022 (72%), Gaps = 8/1022 (1%) Strand=Plus/Plus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGA 163680 |||||| | ||||||||||| | | | || || ||||| ||| | ||||||||||| Sbjct 5076 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 5135 Query 163681 TTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTC 163740 || | || |||| ||| ||| | || | || || ||| | || |||||||| || Sbjct 5136 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 5195 Query 163741 GTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCTC 163800 || || || ||||| || |||||| |||| | ||||||| | || ||| |||||| | Sbjct 5196 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 5255 Query 163801 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 163859 || || || || || || |||||| | | | | |||||| || || || || ||||| Sbjct 5256 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTGTTACTGTGGGG 5314 Query 163860 TCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGT 163919 |||||| || || || ||||| || ||| ||| | || || || ||| |||||| Sbjct 5315 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGT 5374 Query 163920 GGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCG 163979 || |||||||| || || || | || ||||| ||| | || ||||||||||||||||| Sbjct 5375 TGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 5434 Query 163980 -CCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCG 164038 ||| || | | |||| || ||||| || || ||||||||||| |||||||| || | Sbjct 5435 ATCTG-TTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTG 5493 Query 164039 TTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTG 164098 || ||||||||| || || || || |||||||| |||||||||| || || ||||| Sbjct 5494 TTTCTGTCTTTCTAATTTATCCACTAGGTCAATCGGGTTGGTTCTTTGCGCCTAGTTTTG 5553 Query 164099 GAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGA 164158 | || || || || || ||||| || | || | ||||| |||||||| ||||| |||| Sbjct 5554 GTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGA 5613 Query 164159 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTC 164218 |||| || |||||||||||||| |||||| |||| |||| || || ||| ||||||| Sbjct 5614 ACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTC 5673 Query 164219 ACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGG 164278 | || | || || |||||||| || | ||||||||| || ||||| || || | Sbjct 5674 ATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTG 5733 Query 164279 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 164338 | ||| | | || || | ||||| |||||||| |||||||| || |||||||| |||| Sbjct 5734 CTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 5793 Query 164339 CGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 164398 | || ||||| || ||||| ||||| || || || ||| | ||||| || ||||| |||| Sbjct 5794 CACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 5853 Query 164399 TGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTC 164458 | || || | ||| |||||| || |||| | | || || ||| | || || | Sbjct 5854 TACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTAC 5913 Query 164459 GTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTT 164518 |||| || || || || || || || | ||||| |||||||| || || ||||||| Sbjct 5914 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTT 5973 Query 164519 TCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGACC 164578 ||||||| || || || | || |||||||| | || || ||| | || | || | Sbjct 5974 TCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATC 6033 Query 164579 AGC--CAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTTA 164636 ||| || || ||| || | ||||| || || || || || | || || || ||||| Sbjct 6034 AGCCTCATGAAAAC--CTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTA 6091 Query 164637 AT 164638 || Sbjct 6092 AT 6093 >seq43812 Length=736 Score = 383 bits (424), Expect = 2e-101 Identities = 430/575 (75%), Gaps = 0/575 (0%) Strand=Plus/Plus Query 162805 GTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATC 162864 || ||| || |||| || | |||||||| ||| ||||| | ||||| | || ||| Sbjct 3 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 62 Query 162865 AGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCCC 162924 |||||| ||||||| ||| |||| ||||| || |||||||||||||| ||||| || Sbjct 63 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 122 Query 162925 TTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGT 162984 || |||||||| ||||| || ||||| ||||| || || || || ||||| ||||| ||| Sbjct 123 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 182 Query 162985 TCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGT 163044 |||||||| || ||| | || | || || || |||| ||| || || | || Sbjct 183 TCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGG 242 Query 163045 TACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCGGT 163104 |||| ||||||||||||||||| || |||||||| || || || || ||||| || || Sbjct 243 TACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 302 Query 163105 CGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCT 163164 || ||||||||||||||||| |||||||| || ||||| || || |||||| | || Sbjct 303 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 362 Query 163165 GCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAAC 163224 || ||||| || || || || ||||| || || | || | || ||||| |||||| Sbjct 363 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 422 Query 163225 CTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACC 163284 || || |||||||| |||||||| || | ||||| |||| || ||||| | || || Sbjct 423 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 482 Query 163285 TGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATGCT 163344 ||||| || || | |||||||| | ||||||||||||||||| || || |||||| Sbjct 483 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 542 Query 163345 CACAACTTCCCACTTGACCTGGCAGCTGCCGAGTC 163379 ||||||||||| || ||||| || |||| ||||| Sbjct 543 CACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 577 >seq18917 Length=3610 Score = 217 bits (240), Expect = 2e-51 Identities = 298/414 (72%), Gaps = 2/414 (0%) Strand=Plus/Plus Query 162385 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162444 ||||| | ||| ||||| |||| | ||||| || || | || ||||| || || || Sbjct 3193 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3252 Query 162445 ATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 162504 |||||||| || | ||| | ||||| | ||| || |||| ||| | |||||||| Sbjct 3253 ATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 3312 Query 162505 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAAC 162564 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 3313 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 3372 Query 162565 ATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATC 162624 || || || ||||| || |||| |||| || |||||| | || || ||||| ||| Sbjct 3373 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATC 3432 Query 162625 TGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTA 162684 |||||||| ||||| ||||||| ||||| || ||||||||||||| |||| | || Sbjct 3433 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 3492 Query 162685 TTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACCGT 162744 | ||||| | | || | | || ||||| ||||| |||||||| || |||| Sbjct 3493 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 3552 Query 162745 CTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAGC 162797 || ||||||||||| ||||| ||| || ||||| || || ||||||||||| || Sbjct 3553 CTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGC 3605 >seq12239 Length=6102 Score = 214 bits (236), Expect = 2e-50 Identities = 388/560 (69%), Gaps = 6/560 (1%) Strand=Plus/Minus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGA 163680 |||||| | | ||||||||| | | | || || ||||| ||| | ||||||||||| Sbjct 623 TTTGATATTATTGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 564 Query 163681 TTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTC 163740 || | || |||| ||| ||| | || | || || ||| | || |||||||| || Sbjct 563 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 504 Query 163741 GTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCTC 163800 || || || ||||| | |||||| |||| | || |||| | || ||| | | || | Sbjct 503 GTAACTTCATGGTATATTCATGGATTGGCTAGTTTCTATTTAGAAGGTTGCAGTCTTTTA 444 Query 163801 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTG-GGG 163859 || | || || || || |||||| | | | | |||||| || || || ||| ||| Sbjct 443 ACCGATGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTATTA-CTGTGGG 386 Query 163860 TCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGT 163919 || ||| || || || ||||| || ||| ||| | || || ||| |||||| Sbjct 385 TCATGAAGCACAAGGAGATTTTAGTCGTTGGTGTCAATTAAACGGCCTGTGGGTTTTTGT 326 Query 163920 GGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCG 163979 | |||||| | || || || | || ||||| ||| | || ||||||||||||||||| Sbjct 325 TTCTCTCCACAGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 266 Query 163980 C-CTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCG 164038 ||| || | | |||| || ||||| || || ||||||||||| ||||||| || Sbjct 265 ATCTG-TTCAATTGTGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGGTTTTA 207 Query 164039 TTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTG 164098 || || |||||| || || |||| |||||||| |||||||||| || || ||||| Sbjct 206 TTCCTGCCTTTCTAATTTATCCTC-AGGTCAATCTGGTTGGTTCTTTGCACCTAGTTTTG 148 Query 164099 GAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGA 164158 | || || | || || | ||| || | || | |||| ||| |||| ||||| |||| Sbjct 147 GTGTAGCGGTTATATTTCGGTTCATCCTCTTTTTCCAAGAGTTTTATAATTGGACATTGA 88 Query 164159 ACCCCTTCCATATGATGGGA 164178 ||| | |||||||||||| Sbjct 87 ACCATCTACATATGATGGGA 68 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557132830906400