Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_015286.1
Length=175230
Score E
Sequences producing significant alignments: (Bits) Value
seq6139 605 3e-168
seq43812 354 9e-93
seq18917 242 4e-59
seq12239 233 2e-56
seq8879 84.2 2e-11
seq293 82.4 9e-11
>seq6139
Length=10899
Score = 605 bits (670), Expect = 3e-168
Identities = 737/1002 (74%), Gaps = 2/1002 (0%)
Strand=Plus/Plus
Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554
||||||||| | |||| || ||||||||||| ||||||||||| || | || |||
Sbjct 5088 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 5147
Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614
|| ||| ||| | ||| | || |||||| | || || || | || || || |||
Sbjct 5148 CCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 5207
Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTT 168674
|||||||| || ||||| ||||||||| | || || || ||| | || || ||||||
Sbjct 5208 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTT 5267
Query 168675 AGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAA 168734
|||||| || || | | | |||||| | || | || ||||||||||| ||||||
Sbjct 5268 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 5327
Query 168735 GGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGG 168794
|| ||||| | ||||||||| | || || || ||||||||||| || ||||||||
Sbjct 5328 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGT 5387
Query 168795 GCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTAT 168853
|||||||| |||| ||||| ||| | ||||| |||||||| || || ||| || | |
Sbjct 5388 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-T 5446
Query 168854 CCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCT 168913
|| || || ||||| || || ||||||||||| || |||||||||||| ||||||||
Sbjct 5447 GCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCT 5506
Query 168914 CATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAAT 168973
|| || || || ||||||||| ||||||| || || || ||| || || | || ||
Sbjct 5507 AATTTATCCACTAGGTCAATCGGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTAT 5566
Query 168974 CTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATAT 169033
|| |||||| | ||||| | ||||| || ||||| |||||| |||| |||||||||||
Sbjct 5567 ATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATAT 5626
Query 169034 GATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGT 169093
|||||| || || ||| | |||| | || || | | || |||||||||| ||| ||
Sbjct 5627 GATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACTGT 5686
Query 169094 AGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCAC 169153
||| |||||| | | | |||||||||| |||||||| ||| || ||| || ||
Sbjct 5687 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAAC 5746
Query 169154 TCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGG 169213
||| | || || || ||||||||||| || || ||||| || ||||| || ||||||||
Sbjct 5747 TCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGG 5806
Query 169214 TATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGG 169273
|||| || ||||| | ||||| |||||||||||| | ||||| || || | ||
Sbjct 5807 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGG 5866
Query 169274 TCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTT 169333
| | |||| ||| | | || | | ||||| ||| | ||||| ||||| ||||||||
Sbjct 5867 TTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTT 5926
Query 169334 TGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAA 169393
|||||||| || ||| | ||||| |||||||| || |||||||| ||||| || || ||
Sbjct 5927 CGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAA 5986
Query 169394 CATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGAGAA 169453
|| || || ||||||||| |||| || ||| | || || ||||| |||||||| ||
Sbjct 5987 TATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 6046
Query 169454 CTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495
| || | ||||||||||| || || || || || || || ||
Sbjct 6047 CCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 6088
>seq43812
Length=736
Score = 354 bits (392), Expect = 9e-93
Identities = 419/577 (73%), Gaps = 0/577 (0%)
Strand=Plus/Plus
Query 167506 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTA 167565
|||| ||| | |||| || | |||||||| ||| ||||| | |||||||| || |
Sbjct 1 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 60
Query 167566 TCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 167625
|||||||||| ||||||| ||| |||| ||||| || ||||||||||| || |||||||
Sbjct 61 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 120
Query 167626 CCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACG 167685
| || || ||| | || || ||||| ||||||||||| || || || ||||| ||||| |
Sbjct 121 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 180
Query 167686 GTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATG 167745
||||| |||| || ||| || | | |||||||| |||| ||| || || | |
Sbjct 181 GTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 240
Query 167746 GTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCG 167805
| |||| |||||||| |||||||| || || ||||| || |||||||| ||||| || |
Sbjct 241 GGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 300
Query 167806 GTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGG 167865
| || ||||||||||||| || |||||||| || || || | || |||||||| |
Sbjct 301 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 360
Query 167866 CAGCATGGCCTGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCA 167925
| || ||||| || || ||||| |||| ||||
Sbjct 361 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 420
Query 167926 ACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTA 167985
|||| || |||||||| |||||||| || | |||||||| || ||| | ||
Sbjct 421 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 480
Query 167986 CTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATG 168045
||||||| || | | ||||||||| || ||||||||||||||||| || |||||||
Sbjct 481 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 540
Query 168046 CTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAGTC 168082
|||||||||||||||| ||||| ||||||| ||||||
Sbjct 541 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 577
>seq18917
Length=3610
Score = 242 bits (268), Expect = 4e-59
Identities = 296/404 (73%), Gaps = 0/404 (0%)
Strand=Plus/Plus
Query 167097 TGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCT 167156
||| | || || || | |||||||| || | || ||||| || ||| ||||||| |||
Sbjct 3202 TGGATAACTAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCT 3261
Query 167157 ACGTTGCTTGCAGCAACCATCTGTTTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGAC 167216
|| || | | ||||| | ||| || ||||| ||| | | ||||||||| || ||
Sbjct 3262 ACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGAT 3321
Query 167217 ATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCT 167276
|| |||||||| || ||||| ||| |||| || || | || || ||||| || || ||
Sbjct 3322 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCA 3381
Query 167277 GGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCA 167336
||||| || ||||| ||||| ||||||||| | || || ||||| |||||||||||
Sbjct 3382 GGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATCTGGGAAGCT 3441
Query 167337 GCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTC 167396
||| || | || || ||| | ||||| |||||||||| |||| | ||| | |||||
Sbjct 3442 GCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTT 3501
Query 167397 CTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATG 167456
| |||| | | ||||||||||||||||||||||| || |||||| ||||||
Sbjct 3502 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 3561
Query 167457 CGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGC 167500
||||| ||||| ||||||||| || ||||| || || || ||
Sbjct 3562 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGC 3605
>seq12239
Length=6102
Score = 233 bits (258), Expect = 2e-56
Identities = 389/549 (71%), Gaps = 10/549 (2%)
Strand=Plus/Minus
Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554
||||||||| | |||| || ||||||||||| ||||||||||| || | || |||
Sbjct 611 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 552
Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614
|| ||| ||| | ||| | || |||||| | || || || | || || || |||
Sbjct 551 CCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 492
Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCT-GGAGGGCGCAAACTTTCTTACTGCGGCAGT 168673
|||| ||| || ||||| |||| |||| | | ||| ||| |||| | || | |||||
Sbjct 491 TATATTCATGGATTGGCTAGTTTCTATTTAGAAGGTTGCAGTCTTT-TAACCGATGCAGT 433
Query 168674 TAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACA 168733
| |||||| || || | | | |||||| | | | || | ||||| ||| |||||
Sbjct 432 TTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTGT-GGGTCATGAAGCACA 374
Query 168734 AGGGGA-TTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACG 168792
||| || ||| ||| | ||||||||| | || || |||| |||||| | ||||||
Sbjct 373 AGGAGATTTTAGTC-GTTGGTGTCAATTAAACGGCCTGTGGGTTTTTGTTTCTCTCCACA 315
Query 168793 GGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGT 168851
| |||||||| |||| ||||| ||| | ||||| |||||||| || || ||| || |
Sbjct 314 GTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT 255
Query 168852 ATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTT 168911
| | || || ||||| || || ||||||||||| || |||| |||| || | ||||
Sbjct 254 -TGTGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGGTTTTATTCCTGCCTTT 196
Query 168912 CTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCA 168971
|| || || |||| |||||||| ||||||| || || || ||| || || | |
Sbjct 195 CTAATTTATCCTC-AGGTCAATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGTT 137
Query 168972 ATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCAT-TTCA 169030
|| || || ||| | ||||| | |||| || |||| |||||| |||| |||| | ||
Sbjct 136 ATATTTCGGTTCATCCTCTTTTTCCAAGAGTTTTATAATTGGACATTGAA-CCATCTACA 78
Query 169031 TATGATGGG 169039
|||||||||
Sbjct 77 TATGATGGG 69
>seq8879
Length=8198
Score = 84.2 bits (92), Expect = 2e-11
Identities = 119/165 (72%), Gaps = 3/165 (2%)
Strand=Plus/Minus
Query 168879 TCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGT 168938
|||| || || |||||||||||| |||||||| || || || | |||||| ||
Sbjct 6995 TCTGACCCAATTGCTGTTTTTGTT--TGTCTTTCTAATTTATCCATTATGTCAATGTGGT 6938
Query 168939 TGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAA 168998
||||| || || || ||| || || || || || |||||| ||||||| | |||
Sbjct 6937 TGGTTATTTGCGCCTAGTTTTGGTGTAGTGGCTATATTTCGATTCATTCTCTT-TTTCAA 6879
Query 168999 GGATTCCATAACTGGACACTGAATCCATTTCATATGATGGGTGTA 169043
| || ||||| |||||| |||| | | |||||||||| || |||
Sbjct 6878 AGGTTTCATAATTGGACATTGAACCTAATTCATATGATAGGAGTA 6834
>seq293
Length=39549
Score = 82.4 bits (90), Expect = 9e-11
Identities = 118/165 (72%), Gaps = 1/165 (1%)
Strand=Plus/Plus
Query 167176 TCTGTTTC-ATCATCGCCTTCGTCGGTGCTCCTCCTGTGGACATCGATGGTATCCGCGAA 167234
||||||| || ||||| ||| | | ||||||| || || || | |||||| | |||
Sbjct 25995 TCTGTTTTTATTATCGCATTCATTGCTGCTCCTTTAGTAGATATTGGTGGTATTTGTGAA 26054
Query 167235 CCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCT 167294
|| || || | | || | ||||| ||| | || || || ||||| || ||| | ||
Sbjct 26055 CCTATTTCTCGATATCTTCTTTATGGAAACGATATTATTTCAGGTGCCATTATTCATACT 26114
Query 167295 TCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCA 167339
|||| ||||||||| | || || ||| | ||||||||||| |||
Sbjct 26115 TCTACAGCTATTGGTTTGCATTTTTATTCAATCTGGGAAGCTGCA 26159
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 560154384036800
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