Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_015287.1
Length=232878
Score E
Sequences producing significant alignments: (Bits) Value
seq43812 367 2e-96
seq18917 165 1e-35
seq49459 91.5 2e-13
>seq43812
Length=736
Score = 367 bits (406), Expect = 2e-96
Identities = 426/573 (74%), Gaps = 1/573 (0%)
Strand=Plus/Plus
Query 215717 TTCCTTG-TGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTC 215775
|| |||| | || ||| | ||||| || ||| ||||||| |||||| || ||||||||
Sbjct 5 TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTC 64
Query 215776 TGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATT 215835
||| || ||||||| ||| |||| ||||||||||||||||||||||| |||||||||||
Sbjct 65 TGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATT 124
Query 215836 CCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTC 215895
|||||||||||||| |||||||| ||||| || || | || ||| ||||| |||||
Sbjct 125 TCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC 184
Query 215896 ACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTA 215955
| || || ||| | | ||||| || || || || | |||||| || | || ||
Sbjct 185 TTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGGTA 244
Query 215956 CAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCG 216015
|| ||||| ||||| || ||||| |||||||| |||||||| |||||||| ||||| ||
Sbjct 245 CAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCG 304
Query 216016 CCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGC 216075
| ||||||||||| || ||||||||| || | | | || |||||| | || ||
Sbjct 305 ATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGC 364
Query 216076 ATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCT 216135
| || || | |||| ||| ||||| | ||| | |||||||| ||||||||
Sbjct 365 TTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCT 424
Query 216136 TAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTG 216195
|| |||||||| |||||||| || || || || || |||||| ||||||
Sbjct 425 AAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTG 484
Query 216196 GGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCA 216255
||| || || ||||| | || |||||||||||||| ||||| || ||||| |||||
Sbjct 485 GGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 544
Query 216256 CAACTTCCCATTAGACTTGGCTGCTGCTGAATC 216288
||||||||| ||||| | ||||||| ||| ||
Sbjct 545 CAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 577
>seq18917
Length=3610
Score = 165 bits (182), Expect = 1e-35
Identities = 287/416 (69%), Gaps = 6/416 (1%)
Strand=Plus/Plus
Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353
|| ||| | ||| | ||| ||| || || ||| | ||| |||| ||||||||||| |
Sbjct 3193 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3252
Query 215354 ATGATTCCTTGCCTCCT---CGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCA 215410
||||||||| | | | |||| || || || | | |||| ||||||| |||||
Sbjct 3253 ATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCG---CATTCATTGCTGCT 3309
Query 215411 CCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAAC 215470
||||| || ||||| || || || | || || ||| |||| ||| | | || || |||
Sbjct 3310 CCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAAC 3369
Query 215471 AACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCT 215530
|| || || || ||||| || | |||| ||| || || || || || || || ||
Sbjct 3370 AATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCG 3429
Query 215531 ATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTT 215590
||||||||||| ||| | ||||| |||||||| ||||| ||||| |||| |||| ||
Sbjct 3430 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATT 3489
Query 215591 ATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTAC 215650
| | ||||| | ||||| | || || || | ||||||||||| || |
Sbjct 3490 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 3549
Query 215651 AGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGC 215706
| | |||||| | |||||||| |||||| || || || ||||| | |||||
Sbjct 3550 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGC 3605
>seq49459
Length=611
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 215746 TTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCA 215805
||| ||||||| |||||| || ||||||||||| || ||||||| ||| |||| |||||
Sbjct 488 TTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCA 547
Query 215806 GGCTGAGCACAACAT 215820
|||||||||||||||
Sbjct 548 GGCTGAGCACAACAT 562
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 744478717223360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |