Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq43812 367 2e-96 seq18917 165 1e-35 seq49459 91.5 2e-13 >seq43812 Length=736 Score = 367 bits (406), Expect = 2e-96 Identities = 426/573 (74%), Gaps = 1/573 (0%) Strand=Plus/Plus Query 215717 TTCCTTG-TGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTC 215775 || |||| | || ||| | ||||| || ||| ||||||| |||||| || |||||||| Sbjct 5 TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTC 64 Query 215776 TGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATT 215835 ||| || ||||||| ||| |||| ||||||||||||||||||||||| ||||||||||| Sbjct 65 TGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATT 124 Query 215836 CCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTC 215895 |||||||||||||| |||||||| ||||| || || | || ||| ||||| ||||| Sbjct 125 TCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC 184 Query 215896 ACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTA 215955 | || || ||| | | ||||| || || || || | |||||| || | || || Sbjct 185 TTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGGTA 244 Query 215956 CAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCG 216015 || ||||| ||||| || ||||| |||||||| |||||||| |||||||| ||||| || Sbjct 245 CAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCG 304 Query 216016 CCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGC 216075 | ||||||||||| || ||||||||| || | | | || |||||| | || || Sbjct 305 ATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGC 364 Query 216076 ATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCT 216135 | || || | |||| ||| ||||| | ||| | |||||||| |||||||| Sbjct 365 TTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCT 424 Query 216136 TAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTG 216195 || |||||||| |||||||| || || || || || |||||| |||||| Sbjct 425 AAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTG 484 Query 216196 GGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCA 216255 ||| || || ||||| | || |||||||||||||| ||||| || ||||| ||||| Sbjct 485 GGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 544 Query 216256 CAACTTCCCATTAGACTTGGCTGCTGCTGAATC 216288 ||||||||| ||||| | ||||||| ||| || Sbjct 545 CAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 577 >seq18917 Length=3610 Score = 165 bits (182), Expect = 1e-35 Identities = 287/416 (69%), Gaps = 6/416 (1%) Strand=Plus/Plus Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353 || ||| | ||| | ||| ||| || || ||| | ||| |||| ||||||||||| | Sbjct 3193 TTCTGTAACTGGATAACTAGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 3252 Query 215354 ATGATTCCTTGCCTCCT---CGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCA 215410 ||||||||| | | | |||| || || || | | |||| ||||||| ||||| Sbjct 3253 ATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCG---CATTCATTGCTGCT 3309 Query 215411 CCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAAC 215470 ||||| || ||||| || || || | || || ||| |||| ||| | | || || ||| Sbjct 3310 CCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAAC 3369 Query 215471 AACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCT 215530 || || || || ||||| || | |||| ||| || || || || || || || || Sbjct 3370 AATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCG 3429 Query 215531 ATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTT 215590 ||||||||||| ||| | ||||| |||||||| ||||| ||||| |||| |||| || Sbjct 3430 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATT 3489 Query 215591 ATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTAC 215650 | | ||||| | ||||| | || || || | ||||||||||| || | Sbjct 3490 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 3549 Query 215651 AGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGC 215706 | | |||||| | |||||||| |||||| || || || ||||| | ||||| Sbjct 3550 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGC 3605 >seq49459 Length=611 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 215746 TTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCA 215805 ||| ||||||| |||||| || ||||||||||| || ||||||| ||| |||| ||||| Sbjct 488 TTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCA 547 Query 215806 GGCTGAGCACAACAT 215820 ||||||||||||||| Sbjct 548 GGCTGAGCACAACAT 562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744478717223360