Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq6139 569 2e-157 seq43812 428 5e-115 seq12239 206 3e-48 seq18917 192 7e-44 seq8879 82.4 9e-11 >seq6139 Length=10899 Score = 569 bits (630), Expect = 2e-157 Identities = 734/1010 (73%), Gaps = 6/1010 (1%) Strand=Plus/Plus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 ||||||||| | | || ||||| || ||||| || |||||||| || | || || Sbjct 5088 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 5147 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || ||| ||| | || | || |||||| | || || ||| | ||||| || ||| Sbjct 5148 CCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 5207 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTC 183372 ||||| |||||| | ||| ||||||| | |||||| || ||| | || || || || Sbjct 5208 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTT 5267 Query 183373 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAA 183432 || || |||||| | | | | |||||| | ||||||| ||||||||||| | ||| Sbjct 5268 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 5327 Query 183433 GGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGT 183492 || || ||| || ||||| ||| | || || || ||| |||||| || ||||||||| Sbjct 5328 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGT 5387 Query 183493 GCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATC 183552 || || || | || ||||| ||| | || || |||||||||||||| | || | Sbjct 5388 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTG 5447 Query 183553 CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTT 183612 || ||||| ||||| || || ||||||||||| |||||||||||||| ||| || || Sbjct 5448 CGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCTA 5507 Query 183613 ATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATC 183672 || |||||||| ||||| || ||||||||||| |||||||| || ||||| || || Sbjct 5508 ATTTATCCACTAGGTCAATCGGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATA 5567 Query 183673 TTTAGAT---TCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCAT 183729 ||| ||| |||| || |||| ||||||| || || ||||| || ||||| || ||| Sbjct 5568 TTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCATTTCAT 5624 Query 183730 ATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACA 183789 ||||||||||| |||||| |||| || | || || | | ||||| ||||||| || Sbjct 5625 ATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACT 5684 Query 183790 GTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCC 183849 ||||| ||||| || | ||||||||| || ||||| |||||| || ||| | | Sbjct 5685 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 5744 Query 183850 ACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTC 183909 ||||||| ||||| || ||||| ||||| || || || || || |||||||||||||| Sbjct 5745 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTT 5804 Query 183910 GGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATG 183969 |||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || | Sbjct 5805 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 5864 Query 183970 GGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGAT 184029 ||| | ||| | | || |||| | | || || ||| | || || ||||| ||||| Sbjct 5865 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGAC 5924 Query 184030 TTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAG 184089 || || || || ||| | ||||| |||||||| ||||||||||| ||||| || || Sbjct 5925 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAA 5984 Query 184090 AACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAG 184149 || || ||| | || ||||| | || || ||| | || || ||||| || ||||| Sbjct 5985 AATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 6044 Query 184150 AATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 || ||||||| || |||||||| |||| | || || ||||||| ||| Sbjct 6045 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATG 6094 >seq43812 Length=736 Score = 428 bits (474), Expect = 5e-115 Identities = 441/577 (76%), Gaps = 0/577 (0%) Strand=Plus/Plus Query 182212 CTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAA 182271 |||| ||||| |||| || | |||||||| || || |||| ||||| || |||| Sbjct 1 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 60 Query 182272 TCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATC 182331 |||| || || ||||||| |||| | || ||||| ||||||||||||||||||||||| | Sbjct 61 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 120 Query 182332 CCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACG 182391 | || |||||||| |||||||| ||||||||||| || || || |||||||| ||||| | Sbjct 121 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 180 Query 182392 GTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTATG 182451 |||||||||| || ||| | || | || || || || | || || || | | Sbjct 181 GTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 240 Query 182452 GTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTCG 182511 | |||| ||||||||||||||||| || || ||||| || || || || || || || | Sbjct 241 GGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 300 Query 182512 GTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 182571 | || |||||||||||||| || |||||||| || ||||| || || |||||| | | Sbjct 301 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 360 Query 182572 CTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTCA 182631 | || ||||| || || || || ||||| || || | ||| | || ||||| |||| Sbjct 361 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 420 Query 182632 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACA 182691 |||| || |||||||| |||||||| || | ||||| |||| || ||||| |||| | Sbjct 421 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 480 Query 182692 CTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 182751 ||||||| ||| | | ||||||||| ||||||||||||||||||||||| ||||| | Sbjct 481 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 540 Query 182752 CACACAACTTCCCACTAGATCTTGCTGCTGCTGAGTC 182788 | ||||||||||| ||||| || ||||||| |||||| Sbjct 541 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 577 >seq12239 Length=6102 Score = 206 bits (228), Expect = 3e-48 Identities = 382/552 (69%), Gaps = 10/552 (2%) Strand=Plus/Minus Query 183191 TTGATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTC 183250 ||||||||||| | | || ||||| || ||||| || |||||||| || | || Sbjct 613 TTGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 554 Query 183251 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTT 183310 |||| ||| ||| | || | || |||||| | || || ||| | ||||| || | Sbjct 553 TTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 494 Query 183311 GGTATACCCATGGACTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCT 183369 |||||| |||||| | ||| || |||| | ||||| ||| |||| | || | || Sbjct 493 GGTATATTCATGGATTGGCTAGTTTCTATTTAGAAGGTTGCAGTCTTT-TAACCGATGCA 435 Query 183370 GTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCT 183429 || || || |||||| | | | | |||||| | | ||||| | ||||| ||| | Sbjct 434 GTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTGT-GGGTCATGAAGCA 376 Query 183430 CAAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCAC 183489 ||||| || ||| || ||||| ||| | || || ||| |||||| | |||||| Sbjct 375 CAAGGAGATTTTAGTCGTTGGTGTCAATTAAACGGCCTGTGGGTTTTTGTTTCTCTCCAC 316 Query 183490 GGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGT 183549 |||| || || | || ||||| ||| | || || |||||||||||||| | || Sbjct 315 AGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAA 256 Query 183550 ATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTC 183609 | | ||||| ||||| || || ||||||||||| ||||||| |||| | || || Sbjct 255 TTGTGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGGTTTTATTCCTGCCTTT 196 Query 183610 CTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCA 183669 || || ||||| | ||||| ||| |||||||||||||||||||| || ||||| | Sbjct 195 CTAATTTATCCTC-AGGTCAATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGTT 137 Query 183670 ATCTTTAGAT---TCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTC 183726 || ||| | | |||| || |||| || |||| | || ||||| || |||| | Sbjct 136 ATATTTCGGTTCATCCTCTTTTTCC--AAGAGTTT-TATAATTGGACATTGAACCATCTA 80 Query 183727 CATATGATGGGA 183738 |||||||||||| Sbjct 79 CATATGATGGGA 68 >seq18917 Length=3610 Score = 192 bits (212), Expect = 7e-44 Identities = 282/396 (71%), Gaps = 6/396 (2%) Strand=Plus/Plus Query 181814 TACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGC 181873 |||| | || ||||| || | || ||||||||||| ||||||| || || | ||| | Sbjct 3213 TACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGAC 3272 Query 181874 GGCAACCATCTGTTTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTAT 181933 ||||| | ||| || | || ||| | || || ||||| || ||||| || ||||| Sbjct 3273 CGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTAT 3332 Query 181934 CCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 181993 || ||||| || |||| || || | || || ||||| || || || ||||| || | Sbjct 3333 TCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTAT 3392 Query 181994 CCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGA 182053 || | || || |||||| | || || || || |||||||||||||| || |||| Sbjct 3393 TCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATCTGGGAAGCTGCATCCGTTGA 3452 Query 182054 TGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCAT 182113 ||| ||||| || ||||||||||||| |||| ||||| | ||||| | | || | Sbjct 3453 TGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGG--T 3510 Query 182114 CTACGC---CTACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTG 182170 || || || ||||| ||||||||||||||| || ||| | ||||||||||| || Sbjct 3511 GTA-GCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTG 3569 Query 182171 GATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGC 182206 ||| ||| ||||| || ||||| || || || || Sbjct 3570 GATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGC 3605 >seq8879 Length=8198 Score = 82.4 bits (90), Expect = 9e-11 Identities = 118/164 (72%), Gaps = 3/164 (2%) Strand=Plus/Minus Query 183577 TCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCA 183636 |||| || |||||||||||||| ||| || || || |||||| | |||| | | Sbjct 6995 TCTGACCCAATTGCTGTTTTTGT--TTGTCTTTCTAATTTATCCATTATGTCAATGTGGT 6938 Query 183637 TGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAG 183696 ||||| ||||| |||||||| || |||| || || ||| ||||| | | || |||| Sbjct 6937 TGGTTATTTGCGCCTAGTTTTGGTGTAGTGGCTATATTTCGATTCATTCTCTT-TTTCAA 6879 Query 183697 GGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGT 183740 | || || || ||||| || |||| | |||||||| ||||| Sbjct 6878 AGGTTTCATAATTGGACATTGAACCTAATTCATATGATAGGAGT 6835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611201046181600