Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_015288.1
Length=191195
Score E
Sequences producing significant alignments: (Bits) Value
seq6139 569 2e-157
seq43812 428 5e-115
seq12239 206 3e-48
seq18917 192 7e-44
seq8879 82.4 9e-11
>seq6139
Length=10899
Score = 569 bits (630), Expect = 2e-157
Identities = 734/1010 (73%), Gaps = 6/1010 (1%)
Strand=Plus/Plus
Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252
||||||||| | | || ||||| || ||||| || |||||||| || | || ||
Sbjct 5088 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 5147
Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312
|| ||| ||| | || | || |||||| | || || ||| | ||||| || |||
Sbjct 5148 CCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 5207
Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTC 183372
||||| |||||| | ||| ||||||| | |||||| || ||| | || || || ||
Sbjct 5208 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTT 5267
Query 183373 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAA 183432
|| || |||||| | | | | |||||| | ||||||| ||||||||||| | |||
Sbjct 5268 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 5327
Query 183433 GGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGT 183492
|| || ||| || ||||| ||| | || || || ||| |||||| || |||||||||
Sbjct 5328 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGT 5387
Query 183493 GCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATC 183552
|| || || | || ||||| ||| | || || |||||||||||||| | || |
Sbjct 5388 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTG 5447
Query 183553 CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTT 183612
|| ||||| ||||| || || ||||||||||| |||||||||||||| ||| || ||
Sbjct 5448 CGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCTA 5507
Query 183613 ATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATC 183672
|| |||||||| ||||| || ||||||||||| |||||||| || ||||| || ||
Sbjct 5508 ATTTATCCACTAGGTCAATCGGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATA 5567
Query 183673 TTTAGAT---TCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCAT 183729
||| ||| |||| || |||| ||||||| || || ||||| || ||||| || |||
Sbjct 5568 TTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCATTTCAT 5624
Query 183730 ATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACA 183789
||||||||||| |||||| |||| || | || || | | ||||| ||||||| ||
Sbjct 5625 ATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACT 5684
Query 183790 GTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCC 183849
||||| ||||| || | ||||||||| || ||||| |||||| || ||| | |
Sbjct 5685 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 5744
Query 183850 ACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTC 183909
||||||| ||||| || ||||| ||||| || || || || || ||||||||||||||
Sbjct 5745 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTT 5804
Query 183910 GGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATG 183969
|||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || |
Sbjct 5805 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 5864
Query 183970 GGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGAT 184029
||| | ||| | | || |||| | | || || ||| | || || ||||| |||||
Sbjct 5865 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGAC 5924
Query 184030 TTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAG 184089
|| || || || ||| | ||||| |||||||| ||||||||||| ||||| || ||
Sbjct 5925 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAA 5984
Query 184090 AACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAG 184149
|| || ||| | || ||||| | || || ||| | || || ||||| || |||||
Sbjct 5985 AATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 6044
Query 184150 AATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199
|| ||||||| || |||||||| |||| | || || ||||||| |||
Sbjct 6045 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATG 6094
>seq43812
Length=736
Score = 428 bits (474), Expect = 5e-115
Identities = 441/577 (76%), Gaps = 0/577 (0%)
Strand=Plus/Plus
Query 182212 CTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAA 182271
|||| ||||| |||| || | |||||||| || || |||| ||||| || ||||
Sbjct 1 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 60
Query 182272 TCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATC 182331
|||| || || ||||||| |||| | || ||||| ||||||||||||||||||||||| |
Sbjct 61 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 120
Query 182332 CCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACG 182391
| || |||||||| |||||||| ||||||||||| || || || |||||||| ||||| |
Sbjct 121 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 180
Query 182392 GTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTATG 182451
|||||||||| || ||| | || | || || || || | || || || | |
Sbjct 181 GTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 240
Query 182452 GTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTCG 182511
| |||| ||||||||||||||||| || || ||||| || || || || || || || |
Sbjct 241 GGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 300
Query 182512 GTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 182571
| || |||||||||||||| || |||||||| || ||||| || || |||||| | |
Sbjct 301 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 360
Query 182572 CTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTCA 182631
| || ||||| || || || || ||||| || || | ||| | || ||||| ||||
Sbjct 361 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 420
Query 182632 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACA 182691
|||| || |||||||| |||||||| || | ||||| |||| || ||||| |||| |
Sbjct 421 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 480
Query 182692 CTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 182751
||||||| ||| | | ||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 481 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 540
Query 182752 CACACAACTTCCCACTAGATCTTGCTGCTGCTGAGTC 182788
| ||||||||||| ||||| || ||||||| ||||||
Sbjct 541 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 577
>seq12239
Length=6102
Score = 206 bits (228), Expect = 3e-48
Identities = 382/552 (69%), Gaps = 10/552 (2%)
Strand=Plus/Minus
Query 183191 TTGATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTC 183250
||||||||||| | | || ||||| || ||||| || |||||||| || | ||
Sbjct 613 TTGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 554
Query 183251 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTT 183310
|||| ||| ||| | || | || |||||| | || || ||| | ||||| || |
Sbjct 553 TTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 494
Query 183311 GGTATACCCATGGACTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCT 183369
|||||| |||||| | ||| || |||| | ||||| ||| |||| | || | ||
Sbjct 493 GGTATATTCATGGATTGGCTAGTTTCTATTTAGAAGGTTGCAGTCTTT-TAACCGATGCA 435
Query 183370 GTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCT 183429
|| || || |||||| | | | | |||||| | | ||||| | ||||| ||| |
Sbjct 434 GTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTGT-GGGTCATGAAGCA 376
Query 183430 CAAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCAC 183489
||||| || ||| || ||||| ||| | || || ||| |||||| | ||||||
Sbjct 375 CAAGGAGATTTTAGTCGTTGGTGTCAATTAAACGGCCTGTGGGTTTTTGTTTCTCTCCAC 316
Query 183490 GGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGT 183549
|||| || || | || ||||| ||| | || || |||||||||||||| | ||
Sbjct 315 AGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAA 256
Query 183550 ATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTC 183609
| | ||||| ||||| || || ||||||||||| ||||||| |||| | || ||
Sbjct 255 TTGTGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGGTTTTATTCCTGCCTTT 196
Query 183610 CTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCA 183669
|| || ||||| | ||||| ||| |||||||||||||||||||| || ||||| |
Sbjct 195 CTAATTTATCCTC-AGGTCAATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGTT 137
Query 183670 ATCTTTAGAT---TCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTC 183726
|| ||| | | |||| || |||| || |||| | || ||||| || |||| |
Sbjct 136 ATATTTCGGTTCATCCTCTTTTTCC--AAGAGTTT-TATAATTGGACATTGAACCATCTA 80
Query 183727 CATATGATGGGA 183738
||||||||||||
Sbjct 79 CATATGATGGGA 68
>seq18917
Length=3610
Score = 192 bits (212), Expect = 7e-44
Identities = 282/396 (71%), Gaps = 6/396 (2%)
Strand=Plus/Plus
Query 181814 TACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGC 181873
|||| | || ||||| || | || ||||||||||| ||||||| || || | ||| |
Sbjct 3213 TACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGAC 3272
Query 181874 GGCAACCATCTGTTTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTAT 181933
||||| | ||| || | || ||| | || || ||||| || ||||| || |||||
Sbjct 3273 CGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTAT 3332
Query 181934 CCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 181993
|| ||||| || |||| || || | || || ||||| || || || ||||| || |
Sbjct 3333 TCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTAT 3392
Query 181994 CCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGA 182053
|| | || || |||||| | || || || || |||||||||||||| || ||||
Sbjct 3393 TCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATCTGGGAAGCTGCATCCGTTGA 3452
Query 182054 TGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCAT 182113
||| ||||| || ||||||||||||| |||| ||||| | ||||| | | || |
Sbjct 3453 TGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGG--T 3510
Query 182114 CTACGC---CTACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTG 182170
|| || || ||||| ||||||||||||||| || ||| | ||||||||||| ||
Sbjct 3511 GTA-GCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTG 3569
Query 182171 GATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGC 182206
||| ||| ||||| || ||||| || || || ||
Sbjct 3570 GATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGC 3605
>seq8879
Length=8198
Score = 82.4 bits (90), Expect = 9e-11
Identities = 118/164 (72%), Gaps = 3/164 (2%)
Strand=Plus/Minus
Query 183577 TCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCA 183636
|||| || |||||||||||||| ||| || || || |||||| | |||| | |
Sbjct 6995 TCTGACCCAATTGCTGTTTTTGT--TTGTCTTTCTAATTTATCCATTATGTCAATGTGGT 6938
Query 183637 TGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAG 183696
||||| ||||| |||||||| || |||| || || ||| ||||| | | || ||||
Sbjct 6937 TGGTTATTTGCGCCTAGTTTTGGTGTAGTGGCTATATTTCGATTCATTCTCTT-TTTCAA 6879
Query 183697 GGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGT 183740
| || || || ||||| || |||| | |||||||| |||||
Sbjct 6878 AGGTTTCATAATTGGACATTGAACCTAATTCATATGATAGGAGT 6835
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 611201046181600
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