Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_015289.1
Length=176184
Score E
Sequences producing significant alignments: (Bits) Value
seq6139 594 6e-165
seq43812 401 7e-107
seq18917 264 1e-65
seq12239 219 5e-52
seq49459 86.0 7e-12
seq293 82.4 9e-11
>seq6139
Length=10899
Score = 594 bits (658), Expect = 6e-165
Identities = 726/988 (73%), Gaps = 2/988 (0%)
Strand=Plus/Plus
Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250
|| || ||||||||||| ||||||||||| || | || |||| ||| ||| | |||
Sbjct 5106 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 5165
Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310
| || |||||| |||| || || || || || || ||||||||||||||| | ||
Sbjct 5166 TTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCT 5225
Query 166311 AGCAGTTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCT 166370
|| ||| | || ||| || ||| | || || |||||||||||||| || || |
Sbjct 5226 AGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAGT 5285
Query 166371 ATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGG 166430
| | |||||| | | | || ||||||||||| || ||||| ||||| | |||
Sbjct 5286 TTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGG 5345
Query 166431 TGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGT 166490
|| ||| | || || || ||||| ||||||||||||||||||||||| || |||| |||
Sbjct 5346 TGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGT 5405
Query 166491 TTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCAAT 166549
|| ||| | || || |||||| | ||||| ||| | | | || || || ||||||||
Sbjct 5406 TTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAAT 5464
Query 166550 CGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCA 166609
||| || |||||||| |||||||| || ||| ||||||||| || || || || |||||
Sbjct 5465 CGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCA 5524
Query 166610 ATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTT 166669
|||| ||||||| || || || ||| || || | || || || |||||| |||| ||
Sbjct 5525 ATCGGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTT 5584
Query 166670 CCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTAT 166729
| ||||| || || || |||||| |||||||||||||||||||||| || || ||| |
Sbjct 5585 TTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCTGGTGT 5644
Query 166730 TCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCA 166789
|| || | || || | | || || ||||||| ||| ||||| || ||| | | | |
Sbjct 5645 ACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGA 5704
Query 166790 AGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTA 166849
||||||||| |||||||| ||| || || || | ||||||| |||||||| ||
Sbjct 5705 AGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTA 5764
Query 166850 TTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAA 166909
||||||||| || || ||||||| |||||| || ||||| || |||| ||| |||||
Sbjct 5765 TTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAA 5824
Query 166910 GAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCAT 166969
| ||||| |||||||||||| | ||||| || || | ||| | |||| ||| | |
Sbjct 5825 ACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCT 5884
Query 166970 CGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAG 167029
|| | | ||||| ||| | ||||| ||||| |||||||| |||||||| ||| | |
Sbjct 5885 TGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCG 5944
Query 167030 GGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGG 167089
||||| || ||||| || ||||| || |||||||| || || ||||| || || || ||
Sbjct 5945 TGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGG 6004
Query 167090 TATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGA 167149
||| || |||||||||| || ||||| |||||||| | | |||||||||| ||
Sbjct 6005 TATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGA 6064
Query 167150 GGTTCTTCCTAGAGGTAACGCTCTCTAA 167177
|||||| || | || |||||||| |||
Sbjct 6065 GGTTCTACCACGTGGAAACGCTCTTTAA 6092
>seq43812
Length=736
Score = 401 bits (444), Expect = 7e-107
Identities = 432/569 (76%), Gaps = 2/569 (0%)
Strand=Plus/Plus
Query 165184 GTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATC 165243
|||||| || |||| || | |||||||| ||||| ||||||||||||||||| || |||
Sbjct 3 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 62
Query 165244 TCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCG 165303
||||||||||| |||| |||| | || ||||| || || || |||||||||||||| ||
Sbjct 63 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 122
Query 165304 TTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGA 165363
|| |||||| | || || ||||| |||||||| || || || || ||||||||||||
Sbjct 123 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 182
Query 165364 AGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAGAACTACGGT 165423
| | || ||||| | || | || || || |||| || | || | ||
Sbjct 183 TCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGG 242
Query 165424 TATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGGT 165483
|| | || || ||||||||||| || || ||||| || ||||| ||||| || || ||
Sbjct 243 TACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 302
Query 165484 CGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCA 165543
|| | || |||||||| || ||||||||||| ||||| | || |||||| | ||
Sbjct 303 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 362
Query 165544 GCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAAC 165603
|| ||||| ||||| ||||| ||||| |||||| | ||| |||| || ||||| ||||||
Sbjct 363 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 422
Query 165604 CTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTC-AGAACAAAATCATCCCTAC 165662
|| || |||||||| |||||||| || | |||||||||| || || | || |||
Sbjct 423 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGAC-GTGTTATTAATAC 481
Query 165663 TTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGC 165722
||||||||| || | ||||||||| || |||||||||||||||||||| ||||| ||
Sbjct 482 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 541
Query 165723 TCACAACTTCCCCCTCGACCTCGCTGCTG 165751
|||||||||||| || ||||| |||||||
Sbjct 542 TCACAACTTCCCTCTAGACCTAGCTGCTG 570
>seq18917
Length=3610
Score = 264 bits (292), Expect = 1e-65
Identities = 297/396 (75%), Gaps = 6/396 (2%)
Strand=Plus/Plus
Query 164785 ACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCC---CTGTTTGCTC 164841
||| | ||||||||||| | || ||||| |||||| | ||||| || || ||| |
Sbjct 3214 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACC 3273
Query 164842 GCCGCTACAATTTGTTTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGT 164901
|| || | ||| |||||| |||||||| |||||||| || || || |||||||||
Sbjct 3274 GCAACTTCCGTTT---TTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGT 3330
Query 164902 ATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTC 164961
|||||||||||||| | || ||||| | ||||| ||||| || || || ||||| |
Sbjct 3331 ATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATT 3390
Query 164962 GTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATG 165021
|||| ||||| || || || | || || ||||| || |||||||||||| || |
Sbjct 3391 ATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATCTGGGAAGCTGCATCCGTT 3450
Query 165022 GATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGT 165081
||||||||| | ||||||||||||||||| | | |||| | ||||| | | |||
Sbjct 3451 GATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGT 3510
Query 165082 GTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGG 165141
|||||||| || |||||||||||||||||||| || ||| || |||||||||||||||
Sbjct 3511 GTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGG 3570
Query 165142 ATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCT 165177
||| || |||||| || ||||| || ||||||
Sbjct 3571 ATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCT 3606
>seq12239
Length=6102
Score = 219 bits (242), Expect = 5e-52
Identities = 373/530 (70%), Gaps = 8/530 (2%)
Strand=Plus/Minus
Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250
|| || ||||||||||| ||||||||||| || | || |||| ||| ||| | |||
Sbjct 593 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 534
Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310
| || |||||| |||| || || || || || || ||||||| ||||||| | ||
Sbjct 533 TTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATATTCATGGATTGGCT 474
Query 166311 AGCAGTTATCTGGAGGGT-GCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGC 166369
|| ||| | || ||| ||| |||| | || | |||||||||||||| || ||
Sbjct 473 AGTTTCTATTTAGAAGGTTGCAGTCTTT-TAACCGATGCAGTTTCTACTCCTGCTAATAG 415
Query 166370 TATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGA-TTTCGTCAGGT 166428
| | | |||||| | | | || | ||||| ||| || ||||| || ||| ||| | |
Sbjct 414 TTTAGCGCATTCTTTGTTATTACTGT-GGGTCATGAAGCACAAGGAGATTTTAGTC-GTT 357
Query 166429 GGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTG 166488
|||| ||| | || || |||| |||||| |||||||| ||||||| || |||| |
Sbjct 356 GGTGTCAATTAAACGGCCTGTGGGTTTTTGTTTCTCTCCACAGTGCTTTCGCATTAATAG 297
Query 166489 GTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCA 166547
|||| ||| | || || |||||| | ||||| ||| || | | || || ||||||
Sbjct 296 GTTTTATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCAATTGTGACCTTATAATGCA 238
Query 166548 ATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGT 166607
||||| || |||||||| ||||||| || || || |||||| || || |||| |||
Sbjct 237 ATCGCATTCTCTGGTCCAATTGCTGGTTTTATTCCTGCCTTTCTAATTTATCCTC-AGGT 179
Query 166608 CAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTT 166667
||||| ||||||| || || || ||| || || | | || || || ||| ||||
Sbjct 178 CAATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGTTATATTTCGGTTCATCCTC 119
Query 166668 TTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGG 166717
|| | |||| || | || |||||| |||||| | |||||||||||
Sbjct 118 TTTTTCCAAGAGTTTTATAATTGGACATTGAACCATCTACATATGATGGG 69
>seq49459
Length=611
Score = 86.0 bits (94), Expect = 7e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 165214 AGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTC 165273
||||| ||||||||||||||||| || |||||||||||||| |||| |||| | || |||
Sbjct 486 AGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTC 545
Query 165274 CAAGCAGAACATAACAT 165290
|| || || || |||||
Sbjct 546 CAGGCTGAGCACAACAT 562
>seq293
Length=39549
Score = 82.4 bits (90), Expect = 9e-11
Identities = 128/183 (70%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 164856 TTTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGT 164915
|||||||| |||||||| |||||||| || || |||| ||||||| |||||||| |
Sbjct 26000 TTTTATTATCGCATTCATTGCTGCTCCTTTAGTAGATATTGGTGGTATTTGTGAACCTAT 26059
Query 164916 CGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAA 164975
| | | ||| | || || ||| | || || || ||||| | ||| ||||||
Sbjct 26060 TTCTCGATATCTTCTTTATGGAAACGATATTATTTCAGGTGCCATTATTCATACTTCTAC 26119
Query 164976 CGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTA 165035
|| || || | || || ||| | || |||||||||||| | | ||||||| | ||
Sbjct 26120 AGCTATTGGTTTGCATTTTTATTCAATCTGGGAAGCTGCATTTGTTGGTGAATGGCTATA 26179
Query 165036 CAA 165038
|||
Sbjct 26180 CAA 26182
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 563204713863680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |