Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq6139 594 6e-165 seq43812 401 7e-107 seq18917 264 1e-65 seq12239 219 5e-52 seq49459 86.0 7e-12 seq293 82.4 9e-11 >seq6139 Length=10899 Score = 594 bits (658), Expect = 6e-165 Identities = 726/988 (73%), Gaps = 2/988 (0%) Strand=Plus/Plus Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250 || || ||||||||||| ||||||||||| || | || |||| ||| ||| | ||| Sbjct 5106 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 5165 Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310 | || |||||| |||| || || || || || || ||||||||||||||| | || Sbjct 5166 TTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCT 5225 Query 166311 AGCAGTTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCT 166370 || ||| | || ||| || ||| | || || |||||||||||||| || || | Sbjct 5226 AGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAGT 5285 Query 166371 ATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGG 166430 | | |||||| | | | || ||||||||||| || ||||| ||||| | ||| Sbjct 5286 TTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGG 5345 Query 166431 TGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGT 166490 || ||| | || || || ||||| ||||||||||||||||||||||| || |||| ||| Sbjct 5346 TGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGT 5405 Query 166491 TTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCAAT 166549 || ||| | || || |||||| | ||||| ||| | | | || || || |||||||| Sbjct 5406 TTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAAT 5464 Query 166550 CGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCA 166609 ||| || |||||||| |||||||| || ||| ||||||||| || || || || ||||| Sbjct 5465 CGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCA 5524 Query 166610 ATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTT 166669 |||| ||||||| || || || ||| || || | || || || |||||| |||| || Sbjct 5525 ATCGGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTT 5584 Query 166670 CCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTAT 166729 | ||||| || || || |||||| |||||||||||||||||||||| || || ||| | Sbjct 5585 TTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCTGGTGT 5644 Query 166730 TCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCA 166789 || || | || || | | || || ||||||| ||| ||||| || ||| | | | | Sbjct 5645 ACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGA 5704 Query 166790 AGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTA 166849 ||||||||| |||||||| ||| || || || | ||||||| |||||||| || Sbjct 5705 AGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTA 5764 Query 166850 TTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAA 166909 ||||||||| || || ||||||| |||||| || ||||| || |||| ||| ||||| Sbjct 5765 TTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAA 5824 Query 166910 GAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCAT 166969 | ||||| |||||||||||| | ||||| || || | ||| | |||| ||| | | Sbjct 5825 ACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCT 5884 Query 166970 CGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAG 167029 || | | ||||| ||| | ||||| ||||| |||||||| |||||||| ||| | | Sbjct 5885 TGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCG 5944 Query 167030 GGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGG 167089 ||||| || ||||| || ||||| || |||||||| || || ||||| || || || || Sbjct 5945 TGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGG 6004 Query 167090 TATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGA 167149 ||| || |||||||||| || ||||| |||||||| | | |||||||||| || Sbjct 6005 TATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGA 6064 Query 167150 GGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 |||||| || | || |||||||| ||| Sbjct 6065 GGTTCTACCACGTGGAAACGCTCTTTAA 6092 >seq43812 Length=736 Score = 401 bits (444), Expect = 7e-107 Identities = 432/569 (76%), Gaps = 2/569 (0%) Strand=Plus/Plus Query 165184 GTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATC 165243 |||||| || |||| || | |||||||| ||||| ||||||||||||||||| || ||| Sbjct 3 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 62 Query 165244 TCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCG 165303 ||||||||||| |||| |||| | || ||||| || || || |||||||||||||| || Sbjct 63 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 122 Query 165304 TTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGA 165363 || |||||| | || || ||||| |||||||| || || || || |||||||||||| Sbjct 123 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 182 Query 165364 AGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAGAACTACGGT 165423 | | || ||||| | || | || || || |||| || | || | || Sbjct 183 TCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGG 242 Query 165424 TATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGGT 165483 || | || || ||||||||||| || || ||||| || ||||| ||||| || || || Sbjct 243 TACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 302 Query 165484 CGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCA 165543 || | || |||||||| || ||||||||||| ||||| | || |||||| | || Sbjct 303 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 362 Query 165544 GCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAAC 165603 || ||||| ||||| ||||| ||||| |||||| | ||| |||| || ||||| |||||| Sbjct 363 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 422 Query 165604 CTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTC-AGAACAAAATCATCCCTAC 165662 || || |||||||| |||||||| || | |||||||||| || || | || ||| Sbjct 423 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGAC-GTGTTATTAATAC 481 Query 165663 TTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGC 165722 ||||||||| || | ||||||||| || |||||||||||||||||||| ||||| || Sbjct 482 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 541 Query 165723 TCACAACTTCCCCCTCGACCTCGCTGCTG 165751 |||||||||||| || ||||| ||||||| Sbjct 542 TCACAACTTCCCTCTAGACCTAGCTGCTG 570 >seq18917 Length=3610 Score = 264 bits (292), Expect = 1e-65 Identities = 297/396 (75%), Gaps = 6/396 (2%) Strand=Plus/Plus Query 164785 ACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCC---CTGTTTGCTC 164841 ||| | ||||||||||| | || ||||| |||||| | ||||| || || ||| | Sbjct 3214 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACC 3273 Query 164842 GCCGCTACAATTTGTTTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGT 164901 || || | ||| |||||| |||||||| |||||||| || || || ||||||||| Sbjct 3274 GCAACTTCCGTTT---TTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGT 3330 Query 164902 ATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTC 164961 |||||||||||||| | || ||||| | ||||| ||||| || || || ||||| | Sbjct 3331 ATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATT 3390 Query 164962 GTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATG 165021 |||| ||||| || || || | || || ||||| || |||||||||||| || | Sbjct 3391 ATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATCTGGGAAGCTGCATCCGTT 3450 Query 165022 GATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGT 165081 ||||||||| | ||||||||||||||||| | | |||| | ||||| | | ||| Sbjct 3451 GATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGT 3510 Query 165082 GTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGG 165141 |||||||| || |||||||||||||||||||| || ||| || ||||||||||||||| Sbjct 3511 GTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGG 3570 Query 165142 ATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCT 165177 ||| || |||||| || ||||| || |||||| Sbjct 3571 ATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCT 3606 >seq12239 Length=6102 Score = 219 bits (242), Expect = 5e-52 Identities = 373/530 (70%), Gaps = 8/530 (2%) Strand=Plus/Minus Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250 || || ||||||||||| ||||||||||| || | || |||| ||| ||| | ||| Sbjct 593 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 534 Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310 | || |||||| |||| || || || || || || ||||||| ||||||| | || Sbjct 533 TTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATATTCATGGATTGGCT 474 Query 166311 AGCAGTTATCTGGAGGGT-GCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGC 166369 || ||| | || ||| ||| |||| | || | |||||||||||||| || || Sbjct 473 AGTTTCTATTTAGAAGGTTGCAGTCTTT-TAACCGATGCAGTTTCTACTCCTGCTAATAG 415 Query 166370 TATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGA-TTTCGTCAGGT 166428 | | | |||||| | | | || | ||||| ||| || ||||| || ||| ||| | | Sbjct 414 TTTAGCGCATTCTTTGTTATTACTGT-GGGTCATGAAGCACAAGGAGATTTTAGTC-GTT 357 Query 166429 GGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTG 166488 |||| ||| | || || |||| |||||| |||||||| ||||||| || |||| | Sbjct 356 GGTGTCAATTAAACGGCCTGTGGGTTTTTGTTTCTCTCCACAGTGCTTTCGCATTAATAG 297 Query 166489 GTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCA 166547 |||| ||| | || || |||||| | ||||| ||| || | | || || |||||| Sbjct 296 GTTTTATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCAATTGTGACCTTATAATGCA 238 Query 166548 ATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGT 166607 ||||| || |||||||| ||||||| || || || |||||| || || |||| ||| Sbjct 237 ATCGCATTCTCTGGTCCAATTGCTGGTTTTATTCCTGCCTTTCTAATTTATCCTC-AGGT 179 Query 166608 CAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTT 166667 ||||| ||||||| || || || ||| || || | | || || || ||| |||| Sbjct 178 CAATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGTTATATTTCGGTTCATCCTC 119 Query 166668 TTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGG 166717 || | |||| || | || |||||| |||||| | ||||||||||| Sbjct 118 TTTTTCCAAGAGTTTTATAATTGGACATTGAACCATCTACATATGATGGG 69 >seq49459 Length=611 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 165214 AGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTC 165273 ||||| ||||||||||||||||| || |||||||||||||| |||| |||| | || ||| Sbjct 486 AGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTC 545 Query 165274 CAAGCAGAACATAACAT 165290 || || || || ||||| Sbjct 546 CAGGCTGAGCACAACAT 562 >seq293 Length=39549 Score = 82.4 bits (90), Expect = 9e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 164856 TTTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGT 164915 |||||||| |||||||| |||||||| || || |||| ||||||| |||||||| | Sbjct 26000 TTTTATTATCGCATTCATTGCTGCTCCTTTAGTAGATATTGGTGGTATTTGTGAACCTAT 26059 Query 164916 CGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAA 164975 | | | ||| | || || ||| | || || || ||||| | ||| |||||| Sbjct 26060 TTCTCGATATCTTCTTTATGGAAACGATATTATTTCAGGTGCCATTATTCATACTTCTAC 26119 Query 164976 CGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTA 165035 || || || | || || ||| | || |||||||||||| | | ||||||| | || Sbjct 26120 AGCTATTGGTTTGCATTTTTATTCAATCTGGGAAGCTGCATTTGTTGGTGAATGGCTATA 26179 Query 165036 CAA 165038 ||| Sbjct 26180 CAA 26182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563204713863680