Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0 00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq43812 394 1e-104 seq18917 251 8e-62 seq293 95.1 1e-14 >seq43812 Length=736 Score = 394 bits (436), Expect = 1e-104 Identities = 419/553 (76%), Gaps = 0/553 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 553 GGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATA 494 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | |||||| ||| ||||| || | || ||||| || Sbjct 493 ATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGATTGGTTGAAATTG 434 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||| || |||| ||| | ||||| ||||||||| || || Sbjct 433 AAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAACCAAATACCTACT 374 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || |||||||| || ||||| || || | ||||||| ||||||||| |||||| ||| Sbjct 373 ACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGG 314 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || ||||||||||| ||||| || |||||||| ||||||||| Sbjct 313 AAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGA 254 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| |||| || | || || |||||||||| ||||| | ||| | | |||| Sbjct 253 CCGAATCTGTACCCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 194 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| ||||| | || |||||||||||||| || || Sbjct 193 GTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCT 134 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| || |||||||| ||||| || || |||||||| |||| ||| ||||| Sbjct 133 AACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTG 74 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || || ||||| |||||||| ||| ||||| || | || || Sbjct 73 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAG 14 Query 84525 ACAAGGAATACAG 84537 | | ||| |||| Sbjct 13 ATCAAGAAAACAG 1 >seq18917 Length=3610 Score = 251 bits (278), Expect = 8e-62 Identities = 304/414 (73%), Gaps = 0/414 (0%) Strand=Plus/Minus Query 84543 GCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATAT 84602 || |||||||| ||||| || || |||||| ||||| ||||||||||| ||||| | Sbjct 3605 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 3546 Query 84603 GAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACA 84662 ||||||||| ||||||||||| ||| | | |||||| | ||||| | |||| Sbjct 3545 CTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATT 3486 Query 84663 AGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGA 84722 |||| |||||| ||||| || ||||||||||| || | ||| |||||||| || ||| Sbjct 3485 AGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGA 3426 Query 84723 TAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTT 84782 || ||||| | ||||||||| ||| | |||| | |||||| ||||| || |||||| Sbjct 3425 TAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTT 3366 Query 84783 CCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCA 84842 ||||| | ||||| |||| || || ||||| ||||| |||||||| ||||| || ||| Sbjct 3365 CCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCA 3306 Query 84843 CCAACGAATGCAATGATGAAACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTT 84902 ||| |||||| || || ||| | ||| || | | || || |||||||| | | Sbjct 3305 GCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGAATCATCAAAACA 3246 Query 84903 CCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAAG 84956 |||||||| |||| || | |||||| | || || | ||| | ||||||| Sbjct 3245 CCAAACCATCCAATGTAAAGACGGTTTTCGGTACTAGTTATCCAGTTACAGAAG 3192 >seq293 Length=39549 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/189 (71%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 84680 ATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAAT 84739 ||| ||||||||||| | | | ||| |||||||| || | ||| ||||| | |||||| Sbjct 26183 ATTGTATAGCCATTCACCAACAAATGCAGCTTCCCAGATTGAATAAAAATGCAAACCAAT 26124 Query 84740 AGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACC 84799 ||| |||| | ||| | |||||| ||||| || | |||||| || | ||| | | Sbjct 26123 AGCTGTAGAAGTATGAATAATGGCACCTGAAATAATATCGTTTCCATAAAGAAGATATCG 26064 Query 84800 AGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGAT 84859 || | || |||| ||||| ||||||| ||| || ||| ||| |||||| || || Sbjct 26063 AGAAATAGGTTCACAAATACCACCAATATCTACTAAAGGAGCAGCAATGAATGCGATAAT 26004 Query 84860 -GAAACAGA 84867 ||||||| Sbjct 26003 AAAAACAGA 25995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570811353966560