Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raphanus_20raphanistrum_20subsp._20raphanistrum_20[genbank_20GCA_5F0
00769845.1_202014-10-28] 64,732 sequences; 253,833,977 total letters
Query= NC_015569.1
Length=178563
Score E
Sequences producing significant alignments: (Bits) Value
seq43812 394 1e-104
seq18917 251 8e-62
seq293 95.1 1e-14
>seq43812
Length=736
Score = 394 bits (436), Expect = 1e-104
Identities = 419/553 (76%), Gaps = 0/553 (0%)
Strand=Plus/Minus
Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044
|||||||| || || |||||||| ||||| |||||||||||||| ||||| ||||
Sbjct 553 GGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATA 494
Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104
| ||| ||||| ||||| | |||||| ||| ||||| || | || ||||| ||
Sbjct 493 ATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGATTGGTTGAAATTG 434
Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164
|| ||||| || || || ||||| || |||| ||| | ||||| ||||||||| || ||
Sbjct 433 AAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAACCAAATACCTACT 374
Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224
|| |||||||| || ||||| || || | ||||||| ||||||||| |||||| |||
Sbjct 373 ACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGG 314
Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284
||||| | || || || || ||||||||||| ||||| || |||||||| |||||||||
Sbjct 313 AAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGA 254
Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344
||||| |||| || | || || |||||||||| ||||| | ||| | | ||||
Sbjct 253 CCGAATCTGTACCCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 194
Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404
|| || | ||||||||||| ||| ||||| | || |||||||||||||| || ||
Sbjct 193 GTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCT 134
Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464
||||||||||| || |||||||| ||||| || || |||||||| |||| ||| |||||
Sbjct 133 AACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTG 74
Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524
|| || || ||||| || || ||||| |||||||| ||| ||||| || | || ||
Sbjct 73 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAG 14
Query 84525 ACAAGGAATACAG 84537
| | ||| ||||
Sbjct 13 ATCAAGAAAACAG 1
>seq18917
Length=3610
Score = 251 bits (278), Expect = 8e-62
Identities = 304/414 (73%), Gaps = 0/414 (0%)
Strand=Plus/Minus
Query 84543 GCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATAT 84602
|| |||||||| ||||| || || |||||| ||||| ||||||||||| ||||| |
Sbjct 3605 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 3546
Query 84603 GAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACA 84662
||||||||| ||||||||||| ||| | | |||||| | ||||| | ||||
Sbjct 3545 CTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATT 3486
Query 84663 AGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGA 84722
|||| |||||| ||||| || ||||||||||| || | ||| |||||||| || |||
Sbjct 3485 AGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGA 3426
Query 84723 TAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTT 84782
|| ||||| | ||||||||| ||| | |||| | |||||| ||||| || ||||||
Sbjct 3425 TAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTT 3366
Query 84783 CCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCA 84842
||||| | ||||| |||| || || ||||| ||||| |||||||| ||||| || |||
Sbjct 3365 CCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCA 3306
Query 84843 CCAACGAATGCAATGATGAAACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTT 84902
||| |||||| || || ||| | ||| || | | || || |||||||| | |
Sbjct 3305 GCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGAATCATCAAAACA 3246
Query 84903 CCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAAG 84956
|||||||| |||| || | |||||| | || || | ||| | |||||||
Sbjct 3245 CCAAACCATCCAATGTAAAGACGGTTTTCGGTACTAGTTATCCAGTTACAGAAG 3192
>seq293
Length=39549
Score = 95.1 bits (104), Expect = 1e-14
Identities = 135/189 (71%), Gaps = 1/189 (1%)
Strand=Plus/Minus
Query 84680 ATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAAT 84739
||| ||||||||||| | | | ||| |||||||| || | ||| ||||| | ||||||
Sbjct 26183 ATTGTATAGCCATTCACCAACAAATGCAGCTTCCCAGATTGAATAAAAATGCAAACCAAT 26124
Query 84740 AGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACC 84799
||| |||| | ||| | |||||| ||||| || | |||||| || | ||| | |
Sbjct 26123 AGCTGTAGAAGTATGAATAATGGCACCTGAAATAATATCGTTTCCATAAAGAAGATATCG 26064
Query 84800 AGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGAT 84859
|| | || |||| ||||| ||||||| ||| || ||| ||| |||||| || ||
Sbjct 26063 AGAAATAGGTTCACAAATACCACCAATATCTACTAAAGGAGCAGCAATGAATGCGATAAT 26004
Query 84860 -GAAACAGA 84867
|||||||
Sbjct 26003 AAAAACAGA 25995
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570811353966560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |